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paper.bib
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@book{VanRossum1995,
title={Python reference manual},
author={Van Rossum, Guido and Drake Jr, Fred L},
year={1995},
publisher={Centrum voor Wiskunde en Informatica Amsterdam}
}
@article{Lundh1999,
title={An introduction to tkinter},
author={Lundh, Fredrik},
journal={URL: www. pythonware. com/library/tkinter/introduction/index. htm},
year={1999}
}
@software{Gmsh2020,
author = {Christophe Geuzaine and
Jean-Francois Remacle},
title = {Gmsh},
url = {http://http://gmsh.info/},
version = {4.6.0},
date = {2020-06-22},
}
@software{Murphy2022,
title = {PyKrige},
author = {Murphy, B. S.},
url = {https://geostat-framework.readthedocs.io/projects/pykrige/en/stable/},
year = {2022},
}
@ARTICLE{SullivanKaszynski2019,
title = {"PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)"},
author = {Sullivan, C. Bane and Kaszynski, Alexander A.},
journal = {"Journal of Open Source Software"},
volume = {4},
number = {37},
pages = {"1450"},
year = {2019},
doi = {10.21105/joss.01450},
}
@InProceedings{McKinney2010,
author = {Wes McKinney},
title = {"Data Structures for Statistical Computing in Python"},
booktitle = {"Proceedings of the 9th Python in Science Conference"},
pages = {"51--56"},
year = {2010},
editor = {"Stefan van der Walt and Jarrod Millman"},
doi = {10.25080/majora-92bf1922-00a},
}
@ARTICLE{Harris2020,
author = {Harris, Charles R. and Millman, K. Jarrod and van der Walt, Stéfan J and Gommers, Ralf and Virtanen, Pauli and Cournapeau, David and Wieser, Eric and Taylor, Julian and Berg, Sebastian and Smith, Nathaniel J. and Kern, Robert and Picus, Matti and Hoyer, Stephan and van Kerkwijk, Marten H. and Brett, Matthew and Haldane, Allan and Fernández del Río, Jaime and Wiebe, Mark and Peterson, Pearu and Gérard-Marchant, Pierre and Sheppard, Kevin and Reddy, Tyler and Weckesser, Warren and Abbasi, Hameer and Gohlke, Christoph and Oliphant, Travis E.},
title = {Array programming with {NumPy}},
journal = {Nature},
year = {2020},
volume = {585},
pages = {357–362},
doi = {10.1038/s41586-020-2649-2}
}
@article{Virtanen2020,
author={
{Virtanen}, Pauli and
{Gommers}, Ralf and
{Oliphant}, Travis E. and
{Haberland}, Matt and
{Reddy}, Tyler and
{Cournapeau}, David and
{Burovski}, Evgeni and
{Peterson}, Pearu and
{Weckesser}, Warren and
{Bright}, Jonathan and
{van der Walt}, St{\'e}fan J. and
{Brett}, Matthew and
{Wilson}, Joshua and
{Jarrod Millman}, K. and
{Mayorov}, Nikolay and
{Nelson}, Andrew R.~J. and
{Jones}, Eric and
{Kern}, Robert and
{Larson}, Eric and
{Carey}, CJ and
{Polat}, {\.I}lhan and
{Feng}, Yu and
{Moore}, Eric W. and
{VanderPlas}, Jake and
{Laxalde}, Denis and
{Perktold}, Josef and
{Cimrman}, Robert and
{Henriksen}, Ian and
{Quintero}, E.~A. and
{Harris}, Charles R and
{Archibald}, Anne M. and
{Ribeiro}, Ant{\^o}nio H. and
{Pedregosa}, Fabian and
{van Mulbregt}, Paul and
{Contributors}, SciPy 1.0
},
title={"SciPy 1.0: Fundamental Algorithms for Scientific Computing in Python"},
author = {Virtanen, Pauli and
Gommers, Ralf and
Oliphant, Travis E. and
Haberland, Matt and
Reddy, Tyler and
Cournapeau, David and
Burovski, Evgeni and
Peterson, Pearu and
Weckesser, Warren and
Bright, Jonathan and
van der Walt, Stéfan J. and
Brett, Matthew and
Wilson, Joshua and
Millman, K. Jarrod and
Mayorov, Nikolay and
Nelson, Andrew R. J. and
Jones, Eric and
Kern, Robert and
Larson, Eric and
Carey, C J and
Polat, İlhan and
Feng, Yu and
Moore, Eric W. and
VanderPlas, Jake},
journal={Nature Methods},
year="2020",
adsurl={https://rdcu.be/b08Wh},
doi={10.1038/s41592-019-0686-2}
}
@article{Pedregosa2011,
title={"Scikit-learn: Machine Learning in Python"},
author={
Pedregosa, F. and
Varoquaux, G. and
Gramfort, A. and
Michel, V. and
Thirion, B. and
Grisel, O. and
Blondel, M. and
Prettenhofer, P. and
Weiss, R. and
Dubourg, V. and
Vanderplas, J. and
Passos, A. and
Cournapeau, D. and
Brucher, M. and
Perrot, M. and
Duchesnay, E.
},
journal={Journal of Machine Learning Research},
volume={12},
pages={2825--2830},
year={2011}
}
@article{Hunter2007,
title={"Matplotlib: A 2D graphics environment"},
author={Hunter, John D},
journal={Computing in science \& engineering},
volume={9},
number={3},
pages={90},
year={2007},
publisher={IEEE Computer Society},
doi = {10.1109/mcse.2007.55},
}
@ARTICLE{Kolditz2012,
title = {"OpenGeoSys: an open-source initiative for numerical simulation of thermo-hydro-mechanical/chemical (THM/C) processes in porous media"},
author = {Olaf Kolditz and
Sebastian Bauer and
Lars Bilke and
Norbert Böttcher and
Jean Olaf Delfs and
Tom Fischer and
U J Görke and
Thomas Kalbacher and
Georg Kosakowski and
Christopher Ian McDermott and
Chan-Hee Park and
Florin Radu and
Karsten Rink and
Haibing Shao and
Feng Sun and
Yuanyuan Sun and
Ashok Singh, and
Joshua Taron and
Marc Walther and
Wenqing Wang and
Norihiro Watanabe and
Y Wu and
Miongliang Xie and
Wenjie Xu and
Björn Zehner},
abstract = {"In this paper we describe the OpenGeoSys (OGS) project, which is a scientific open-source initiative for numerical simulation of thermo-hydro-mechanical-chemical processes
in porous media. The basic concept is to provide a flexible numerical framework (using primarily the Finite Element Method (FEM)) for solving multifield problems in porous and
fractured media for applications in geoscience and hydrology. To this purpose OGS is based on an object-oriented FEM concept including a broad spectrum of interfaces for pre- and
postprocessing. The OGS idea has been in development since the mid-eighties. We provide a short historical note about the continuous process of concept and software development
having evolved through Fortran, C, and C++ implementations. The idea behind OGS is to provide an open platform to the community, outfitted with professional software-engineering
tools such as platform-independent compiling and automated benchmarking. A comprehensive benchmarking book has been prepared for publication. Benchmarking has been proven to be a
valuable tool for cooperation between different developer teams, for example, for code comparison and validation purposes (DEVOVALEX and CO2 BENCH projects). On one hand,
object-orientation (OO) provides a suitable framework for distributed code development; however, the parallelization of OO codes still lacks efficiency. High-performance-computing
efficiency of OO codes is subject to future research."},
journal = {Environmental Earth Sciences},
publisher = {Springer},
volume = {67},
number = {2},
pages = {"589--599"},
year = {2012},
doi = {10.1007/s12665-012-1546-x},
}
@ARTICLE{Kolditz2016,
title = {"Thermo-Hydro-Mechanical-Chemical Processes in Fractured Porous Media: Modelling and Benchmarking"},
author = {Olaf Kolditz and
Uwe-Jens Görke and
Hua Shao and
Wenqing Wang and
Sebastian Bauer},
journal = {Terrestrial Environmental Sciences},
publisher = {Springer},
volume = {67},
number = {2},
pages = {"219--222"},
year = {2016},
doi = {10.1007/978-3-319-29224-3},
}
@software{Bilke2022,
author = {Lars Bilke and
Thomas Fischer and
Dmitri Naumov and
Christoph Lehmann and
Wenqing Wang and
Renchao Lu and
Boyan Meng and
Karsten Rink and
Norbert Grunwald and
Jörg Buchwald and
Christian Silbermann and
Robert Habel and
Linda Günther and
Mostafa Mollaali and
Tobias Meisel and
Jakob Randow and
Sophia Einspänner and
Haibing Shao and
Kata Kurgyis and
Olaf Kolditz and
Jaime Garibay},
title = {OpenGeoSys},
month = apr,
year = 2022,
note = {{If you use this software, please cite it using these metadata.}},
publisher = {Zenodo},
version = {6.4.3},
doi = {10.5281/zenodo.7092676},
url = {https://doi.org/10.5281/zenodo.7092676}
}
@ARTICLE{McDermott2015,
title = {"Application of hybrid numerical and analytical solutions for the simulation of coupled thermal, hydraulic, mechanical and chemical processes during fluid flow through a fractured rock"},
author = {"Christopher I. McDermott and
Alexander Bond and
Andrew Fraser Harris and
Neil Chittenden and
Kate Thatcher"},
journal = {"Environmental Earth Sciences"},
volume = {74},
pages = {"7837--7854"},
year = {2015},
doi = {10.1007/s12665-015-4769-9}
}
@ARTICLE{McCraw2016,
title = {"Experimental investigation and hybrid numerical analytical hydraulicmechanical simulation of supercritical CO2flowing through a naturalfracture in caprock"},
author = {"Claire McCraw and
Katriona Edlmann and
Johannes Miocic and
Stuart Gilfillan and
R. Stuart Haszeldine and
Christopher I. McDermott"},
journal = {"International Journal of Greenhouse Gas Control"},
volume = {48},
pages = {"120--133"},
year = {2016},
}