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MANIFEST
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# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.030.
.gitattributes
.github/workflows/ci.yml
.github/workflows/docker.yml
.gitignore
Changes
INSTALL
LICENSE
MANIFEST
META.json
META.yml
Makefile.PL
README.md
cpanfile
dist.ini
docker/Dockerfile
docker/README.md
docker/run_sandy.sh
inc/SandyMakeMaker.pm
lib/App/Sandy.pm
lib/App/Sandy/BGZF.pm
lib/App/Sandy/Base.pm
lib/App/Sandy/CLI.pm
lib/App/Sandy/CLI/App.pm
lib/App/Sandy/CLI/Command.pm
lib/App/Sandy/Command/Citation.pm
lib/App/Sandy/Command/Expression.pm
lib/App/Sandy/Command/Expression/Add.pm
lib/App/Sandy/Command/Expression/Dump.pm
lib/App/Sandy/Command/Expression/Remove.pm
lib/App/Sandy/Command/Expression/Restore.pm
lib/App/Sandy/Command/Genome.pm
lib/App/Sandy/Command/Quality.pm
lib/App/Sandy/Command/Quality/Add.pm
lib/App/Sandy/Command/Quality/Dump.pm
lib/App/Sandy/Command/Quality/Remove.pm
lib/App/Sandy/Command/Quality/Restore.pm
lib/App/Sandy/Command/Transcriptome.pm
lib/App/Sandy/Command/Variation.pm
lib/App/Sandy/Command/Variation/Add.pm
lib/App/Sandy/Command/Variation/Dump.pm
lib/App/Sandy/Command/Variation/Remove.pm
lib/App/Sandy/Command/Variation/Restore.pm
lib/App/Sandy/Command/Version.pm
lib/App/Sandy/DB.pm
lib/App/Sandy/DB/Handle/Expression.pm
lib/App/Sandy/DB/Handle/Quality.pm
lib/App/Sandy/DB/Handle/Variation.pm
lib/App/Sandy/DB/Schema.pm
lib/App/Sandy/DB/Schema/Result/ExpressionMatrix.pm
lib/App/Sandy/DB/Schema/Result/QualityProfile.pm
lib/App/Sandy/DB/Schema/Result/StructuralVariation.pm
lib/App/Sandy/InterlaceProcesses.pm
lib/App/Sandy/PieceTable.pm
lib/App/Sandy/Quality.pm
lib/App/Sandy/RNG.pm
lib/App/Sandy/Read.pm
lib/App/Sandy/Read/PairedEnd.pm
lib/App/Sandy/Read/SingleEnd.pm
lib/App/Sandy/Role/BSearch.pm
lib/App/Sandy/Role/Counter.pm
lib/App/Sandy/Role/Digest.pm
lib/App/Sandy/Role/IO.pm
lib/App/Sandy/Role/ParseArgv.pm
lib/App/Sandy/Role/RunTimeTemplate.pm
lib/App/Sandy/Role/SeqID.pm
lib/App/Sandy/Role/Statistic.pm
lib/App/Sandy/Role/Template/Fastq.pm
lib/App/Sandy/Role/Template/Sam.pm
lib/App/Sandy/Seq.pm
lib/App/Sandy/Seq/PairedEnd.pm
lib/App/Sandy/Seq/SingleEnd.pm
lib/App/Sandy/Simulator.pm
lib/App/Sandy/Types.pm
lib/App/Sandy/WeightedRaffle.pm
perlcritic.ini
ppport.h
schema.conf
script/sandy
share/assets/db.sql
share/assets/db.sqlite3
share/completions/sandy-completion.bash
share/completions/sandy-completion.zsh
share/imgs/sandy.jpeg
t/00-load.t
t/author-critic.t
t/author-pod-syntax.t
t/lib/TestsFor.pm
t/lib/TestsFor/App/Sandy/PieceTable.pm
t/lib/TestsFor/App/Sandy/Quality.pm
t/lib/TestsFor/App/Sandy/RNG.pm
t/lib/TestsFor/App/Sandy/Read.pm
t/lib/TestsFor/App/Sandy/Read/PairedEnd.pm
t/lib/TestsFor/App/Sandy/Read/SingleEnd.pm
t/lib/TestsFor/App/Sandy/Seq.pm
t/lib/TestsFor/App/Sandy/Seq/PairedEnd.pm
t/lib/TestsFor/App/Sandy/Seq/SingleEnd.pm
t/lib/TestsFor/App/Sandy/Simulator.pm
t/test_classes.t
weaver.ini
xs/RNG.h
xs/RNG.xs
xs/gauss.c
xs/ranlxd.c
xs/rng.c
xs/sandy_rng.h
xs/typemap