diff --git a/bin/extract_galaxy_workflows.py b/bin/extract_galaxy_workflows.py index eec03b4c..be655478 100644 --- a/bin/extract_galaxy_workflows.py +++ b/bin/extract_galaxy_workflows.py @@ -55,7 +55,7 @@ def init_from_search(self, wf: dict, source: str, tools: dict) -> None: self.source = source if self.source == "WorkflowHub": self.id = wf["data"]["id"] - self.link = f"https://workflowhub.eu{wf["data"]["links"]["self"]}" + self.link = f"https://workflowhub.eu{ wf['data']['links']['self'] }" self.name = wf["data"]["attributes"]["title"] self.tags = wf["data"]["attributes"]["tags"] self.create_time = shared.format_date(wf["data"]["attributes"]["created_at"]) @@ -68,7 +68,7 @@ def init_from_search(self, wf: dict, source: str, tools: dict) -> None: self.edam_topic = [t["label"] for t in wf["data"]["attributes"]["topic_annotations"]] else: self.id = wf["id"] - self.link = f"{ source }/published/workflow?id={ wf["id"] }" + self.link = f"{ source }/published/workflow?id={ wf['id'] }" self.name = wf["name"] self.add_creators(wf) self.number_of_steps = wf["number_of_steps"] if "number_of_steps" in wf else len(wf["steps"].keys()) @@ -93,9 +93,9 @@ def add_creators(self, wf: dict) -> None: if len(creators) == 0: other = wf["data"]["attributes"]["other_creators"] if other and len(other) > 0: - self.creators.extend(wf["data"]["attributes"]["other_creators"].split(",")) + self.creators.extend(wf['data']['attributes']['other_creators'].split(",")) else: - self.creators.extend([f"{c["given_name"]} {c["family_name"]}" for c in creators]) + self.creators.extend([f"{c['given_name']} {c['family_name']}" for c in creators]) else: if "creator" in wf and wf["creator"] is not None: self.creators.extend([c["name"] for c in wf["creator"]])