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Upgrade to newer version of fastx
Unfortunately tests are missing
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3 files changed

+11
-9
lines changed

3 files changed

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-9
lines changed

tool_collections/fastx_toolkit/fasta_clipping_histogram/fasta_clipping_histogram.xml

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<tool id="cshl_fasta_clipping_histogram" name="Length Distribution" version="1.0.0">
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<tool id="cshl_fasta_clipping_histogram" name="Length Distribution" version="1.14">
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<description>chart</description>
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<requirements>
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<requirement type="package" version="0.0.13">fastx_toolkit</requirement>
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<requirement type="package" version="0.0.14">fastx_toolkit</requirement>
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</requirements>
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<command>fasta_clipping_histogram.pl $input $outfile</command>
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<command>
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fasta_clipping_histogram.pl
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'$input'
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'$outfile'
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</command>
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<inputs>
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<param format="fasta" name="input" type="data" label="Library to analyze" />
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</inputs>
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<outputs>
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<data format="png" name="outfile" metadata_source="input" />
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</outputs>

tool_collections/fastx_toolkit/fasta_formatter/fasta_formatter.xml

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<tool id="cshl_fasta_formatter" version="1.0.0" name="FASTA Width">
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<tool id="cshl_fasta_formatter" version="1.14" name="FASTA Width">
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<description>formatter</description>
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<requirements>
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<requirement type="package" version="0.0.13">fastx_toolkit</requirement>
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<requirement type="package" version="0.0.14">fastx_toolkit</requirement>
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</requirements>
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<!--
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Note:
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<?xml version="1.0"?>
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<tool_dependency>
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<package name="fastx_toolkit" version="0.0.13">
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<repository name="package_fastx_toolkit_0_0_13" owner="devteam" />
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<package name="fastx_toolkit" version="0.0.14">
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<repository name="package_fastx_toolkit_0_0_14" owner="iuc" />
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</package>
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</tool_dependency>

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