diff --git a/tools/qupath_roi_splitter/qupath_roi_splitter.py b/tools/qupath_roi_splitter/qupath_roi_splitter.py
index 271db96aa..a02c68d0e 100644
--- a/tools/qupath_roi_splitter/qupath_roi_splitter.py
+++ b/tools/qupath_roi_splitter/qupath_roi_splitter.py
@@ -102,7 +102,7 @@ def split_qupath_roi(in_roi):
     parser = argparse.ArgumentParser(description="Split ROI coordinates of QuPath TMA annotation by cell type (classification)")
     parser.add_argument("--qupath_roi", default=False, help="Input QuPath annotation (GeoJSON file)")
     parser.add_argument("--fill", action="store_true", required=False, help="Fill pixels in ROIs (order of coordinates will be lost)")
-    parser.add_argument('--version', action='version', version='%(prog)s 0.2.0')
+    parser.add_argument('--version', action='version', version='%(prog)s 0.3.0')
     parser.add_argument("--all", action="store_true", required=False, help="Extracts all ROIs")
     parser.add_argument("--img", action="store_true", required=False, help="Generates image of ROIs")
     args = parser.parse_args()
diff --git a/tools/qupath_roi_splitter/qupath_roi_splitter.xml b/tools/qupath_roi_splitter/qupath_roi_splitter.xml
index cf062103a..6cd8b0169 100644
--- a/tools/qupath_roi_splitter/qupath_roi_splitter.xml
+++ b/tools/qupath_roi_splitter/qupath_roi_splitter.xml
@@ -1,7 +1,7 @@
 <tool id="qupath_roi_splitter" name="QuPath ROI Splitter" version="@VERSION@+galaxy@VERSION_SUFFIX@">
     <description>Split ROI coordinates of QuPath TMA annotation by cell type (classification)</description>
     <macros>
-        <token name="@VERSION@">0.2.1</token>
+        <token name="@VERSION@">0.3.0</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <requirements>