diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml index 50d247c..6658c01 100644 --- a/.github/workflows/rust.yml +++ b/.github/workflows/rust.yml @@ -27,11 +27,9 @@ jobs: - name: Checkout repository uses: actions/checkout@v3 - name: Install Rust (${{matrix.rust}}) - uses: actions-rs/toolchain@v1 + uses: dtolnay/rust-toolchain@stable with: - profile: minimal toolchain: '${{matrix.rust}}' - override: true components: 'rustfmt, clippy' - name: Run cargo ${{matrix.command}} uses: actions-rs/cargo@v1 @@ -51,11 +49,9 @@ jobs: - name: Checkout repository uses: actions/checkout@v3 - name: Install Rust (${{matrix.rust}}) - uses: actions-rs/toolchain@v1 + uses: dtolnay/rust-toolchain@stable with: toolchain: '${{matrix.rust}}' - profile: minimal - override: true - name: Build and test all crates run: cargo test -vv --workspace - name: Build examples @@ -73,11 +69,9 @@ jobs: - name: Checkout repository uses: actions/checkout@v3 - name: Install Rust (${{matrix.rust}}) - uses: actions-rs/toolchain@v1 + uses: dtolnay/rust-toolchain@stable with: toolchain: '${{matrix.rust}}' - profile: minimal - override: true - name: Build and bench run: cargo bench -vv --workspace @@ -88,11 +82,9 @@ jobs: - name: Checkout repository uses: actions/checkout@v3 - name: Install Rust - uses: actions-rs/toolchain@v1 + uses: dtolnay/rust-toolchain@stable with: toolchain: nightly - profile: minimal - override: true - name: Install cargo audit run: cargo install cargo-audit - name: Run cargo audit @@ -105,11 +97,9 @@ jobs: - name: Checkout repository uses: actions/checkout@v3 - name: Install Rust - uses: actions-rs/toolchain@v1 + uses: dtolnay/rust-toolchain@stable with: toolchain: nightly - profile: minimal - override: true - name: Install tarpaulin run: cargo install cargo-tarpaulin - name: Run code coverage @@ -124,11 +114,9 @@ jobs: - name: Checkout repository uses: actions/checkout@v3 - name: Install Rust - uses: actions-rs/toolchain@v1 + uses: dtolnay/rust-toolchain@stable with: toolchain: nightly - profile: minimal - override: true - name: Run test with sanitizer env: RUSTFLAGS: "-Z sanitizer=address" diff --git a/Cargo.lock b/Cargo.lock index b1d417d..2e63928 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -2,6 +2,21 @@ # It is not intended for manual editing. version = 3 +[[package]] +name = "addr2line" +version = "0.20.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f4fa78e18c64fce05e902adecd7a5eed15a5e0a3439f7b0e169f0252214865e3" +dependencies = [ + "gimli", +] + +[[package]] +name = "adler" +version = "1.0.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" + [[package]] name = "ahash" version = "0.7.6" @@ -15,18 +30,18 @@ dependencies = [ [[package]] name = "aho-corasick" -version = "1.0.1" +version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "67fc08ce920c31afb70f013dcce1bfc3a3195de6a228474e45e1f145b36f8d04" +checksum = "43f6cb1bf222025340178f382c426f13757b2960e89779dfcb319c32542a5a41" dependencies = [ "memchr", ] [[package]] name = "anyhow" -version = "1.0.71" +version = "1.0.72" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c7d0618f0e0b7e8ff11427422b64564d5fb0be1940354bfe2e0529b18a9d9b8" +checksum = "3b13c32d80ecc7ab747b80c3784bce54ee8a7a0cc4fbda9bf4cda2cf6fe90854" [[package]] name = "ascii" @@ -53,7 +68,7 @@ checksum = "16e62a023e7c117e27523144c5d2459f4397fcc3cab0085af8e2224f643a0193" dependencies = [ "proc-macro2", "quote", - "syn 2.0.15", + "syn 2.0.27", ] [[package]] @@ -62,6 +77,21 @@ version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa" +[[package]] +name = "backtrace" +version = "0.3.68" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4319208da049c43661739c5fade2ba182f09d1dc2299b32298d3a31692b17e12" +dependencies = [ + "addr2line", + "cc", + "cfg-if", + "libc", + "miniz_oxide", + "object", + "rustc-demangle", +] + [[package]] name = "bincode" version = "1.3.3" @@ -77,6 +107,12 @@ version = "1.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" +[[package]] +name = "bitflags" +version = "2.3.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "630be753d4e58660abd17930c71b647fe46c27ea6b63cc59e1e3851406972e42" + [[package]] name = "byte-slice-cast" version = "1.2.2" @@ -148,31 +184,37 @@ dependencies = [ [[package]] name = "crossbeam-epoch" -version = "0.9.14" +version = "0.9.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "46bd5f3f85273295a9d14aedfb86f6aadbff6d8f5295c4a9edb08e819dcf5695" +checksum = "ae211234986c545741a7dc064309f67ee1e5ad243d0e48335adc0484d960bcc7" dependencies = [ "autocfg", "cfg-if", "crossbeam-utils", - "memoffset 0.8.0", + "memoffset 0.9.0", "scopeguard", ] [[package]] name = "crossbeam-utils" -version = "0.8.15" +version = "0.8.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c063cd8cc95f5c377ed0d4b49a4b21f632396ff690e8470c29b3359b346984b" +checksum = "5a22b2d63d4d1dc0b7f1b6b2747dd0088008a9be28b6ddf0b1e7d335e3037294" dependencies = [ "cfg-if", ] [[package]] name = "either" -version = "1.8.1" +version = "1.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a26ae43d7bcc3b814de94796a5e736d4029efb0ee900c12e2d54c993ad1a1e07" + +[[package]] +name = "equivalent" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7fcaabb2fef8c910e7f4c7ce9f67a1283a1715879a7c230ca9d6d1ae31f16d91" +checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" [[package]] name = "flexbuffers" @@ -180,7 +222,7 @@ version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "15d14128f06405808ce75bfebe11e9b0f9da18719ede6d7bdb1702d6bfe0f7e8" dependencies = [ - "bitflags", + "bitflags 1.3.2", "byteorder", "num_enum", "serde", @@ -253,7 +295,7 @@ checksum = "89ca545a94061b6365f2c7355b4b32bd20df3ff95f02da9329b34ccc3bd6ee72" dependencies = [ "proc-macro2", "quote", - "syn 2.0.15", + "syn 2.0.27", ] [[package]] @@ -297,15 +339,21 @@ dependencies = [ [[package]] name = "getrandom" -version = "0.2.9" +version = "0.2.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c85e1d9ab2eadba7e5040d4e09cbd6d072b76a557ad64e797c2cb9d4da21d7e4" +checksum = "be4136b2a15dd319360be1c07d9933517ccf0be8f16bf62a3bee4f0d618df427" dependencies = [ "cfg-if", "libc", "wasi", ] +[[package]] +name = "gimli" +version = "0.27.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b6c80984affa11d98d1b88b66ac8853f143217b399d3c74116778ff8fdb4ed2e" + [[package]] name = "hashbrown" version = "0.12.3" @@ -315,12 +363,18 @@ dependencies = [ "ahash", ] +[[package]] +name = "hashbrown" +version = "0.14.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2c6201b9ff9fd90a5a3bac2e56a830d0caa509576f0e503818ee82c181b3437a" + [[package]] name = "hdf5" version = "0.8.1" -source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jan_2023#90f05d0ce4af1ffa684f70255e636638e48ff901" +source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jul_2023#139027b327c0c6e441f54c769b64ddb6a7d93c7e" dependencies = [ - "bitflags", + "bitflags 2.3.3", "cfg-if", "hdf5-derive", "hdf5-sys", @@ -328,25 +382,25 @@ dependencies = [ "lazy_static", "libc", "ndarray", - "parking_lot 0.11.2", + "parking_lot 0.12.1", "paste", ] [[package]] name = "hdf5-derive" version = "0.8.1" -source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jan_2023#90f05d0ce4af1ffa684f70255e636638e48ff901" +source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jul_2023#139027b327c0c6e441f54c769b64ddb6a7d93c7e" dependencies = [ "proc-macro-error", "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.27", ] [[package]] name = "hdf5-src" version = "0.8.1" -source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jan_2023#90f05d0ce4af1ffa684f70255e636638e48ff901" +source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jul_2023#139027b327c0c6e441f54c769b64ddb6a7d93c7e" dependencies = [ "cmake", "libz-sys", @@ -355,7 +409,7 @@ dependencies = [ [[package]] name = "hdf5-sys" version = "0.8.1" -source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jan_2023#90f05d0ce4af1ffa684f70255e636638e48ff901" +source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jul_2023#139027b327c0c6e441f54c769b64ddb6a7d93c7e" dependencies = [ "hdf5-src", "libc", @@ -371,7 +425,7 @@ dependencies = [ [[package]] name = "hdf5-types" version = "0.8.1" -source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jan_2023#90f05d0ce4af1ffa684f70255e636638e48ff901" +source = "git+https://github.com/magnusuMET/hdf5-rust?branch=hidefix_jul_2023#139027b327c0c6e441f54c769b64ddb6a7d93c7e" dependencies = [ "ascii", "cfg-if", @@ -381,12 +435,9 @@ dependencies = [ [[package]] name = "hermit-abi" -version = "0.2.6" +version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ee512640fe35acbfb4bb779db6f0d80704c2cacfa2e39b601ef3e3f47d1ae4c7" -dependencies = [ - "libc", -] +checksum = "443144c8cdadd93ebf52ddb4056d257f5b52c04d3c804e657d19eb73fc33668b" [[package]] name = "hidefix" @@ -425,12 +476,12 @@ dependencies = [ [[package]] name = "indexmap" -version = "1.9.3" +version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99" +checksum = "d5477fe2230a79769d8dc68e0eabf5437907c0457a5614a9e8dddb67f65eb65d" dependencies = [ - "autocfg", - "hashbrown", + "equivalent", + "hashbrown 0.14.0", ] [[package]] @@ -465,9 +516,9 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" -version = "0.2.142" +version = "0.2.147" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6a987beff54b60ffa6d51982e1aa1146bc42f19bd26be28b0586f252fccf5317" +checksum = "b4668fb0ea861c1df094127ac5f1da3409a82116a4ba74fca2e58ef927159bb3" [[package]] name = "libdeflate-sys" @@ -489,19 +540,19 @@ dependencies = [ [[package]] name = "libloading" -version = "0.7.4" +version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b67380fd3b2fbe7527a606e18729d21c6f3951633d0500574c4dc22d2d638b9f" +checksum = "d580318f95776505201b28cf98eb1fa5e4be3b689633ba6a3e6cd880ff22d8cb" dependencies = [ "cfg-if", - "winapi", + "windows-sys", ] [[package]] name = "libz-sys" -version = "1.1.9" +version = "1.1.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "56ee889ecc9568871456d42f603d6a0ce59ff328d291063a45cbdf0036baf6db" +checksum = "d97137b25e321a73eef1418d1d5d2eda4d77e12813f8e6dead84bc52c5870a7b" dependencies = [ "cc", "libc", @@ -511,9 +562,9 @@ dependencies = [ [[package]] name = "lock_api" -version = "0.4.9" +version = "0.4.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "435011366fe56583b16cf956f9df0095b405b82d76425bc8981c0e22e60ec4df" +checksum = "c1cc9717a20b1bb222f333e6a92fd32f7d8a18ddc5a3191a11af45dcbf4dcd16" dependencies = [ "autocfg", "scopeguard", @@ -521,12 +572,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.17" +version = "0.4.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" -dependencies = [ - "cfg-if", -] +checksum = "b06a4cde4c0f271a446782e3eff8de789548ce57dbc8eca9292c27f4a42004b4" [[package]] name = "lru" @@ -534,7 +582,7 @@ version = "0.7.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e999beba7b6e8345721bd280141ed958096a2e4abdf74f67ff4ce49b4b54e47a" dependencies = [ - "hashbrown", + "hashbrown 0.12.3", ] [[package]] @@ -564,13 +612,22 @@ dependencies = [ [[package]] name = "memoffset" -version = "0.8.0" +version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d61c719bcfbcf5d62b3a09efa6088de8c54bc0bfcd3ea7ae39fcc186108b8de1" +checksum = "5a634b1c61a95585bd15607c6ab0c4e5b226e695ff2800ba0cdccddf208c406c" dependencies = [ "autocfg", ] +[[package]] +name = "miniz_oxide" +version = "0.7.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e7810e0be55b428ada41041c41f32c9f1a42817901b4ccf45fa3d4b6561e74c7" +dependencies = [ + "adler", +] + [[package]] name = "ndarray" version = "0.15.6" @@ -606,18 +663,18 @@ dependencies = [ [[package]] name = "num-traits" -version = "0.2.15" +version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "578ede34cf02f8924ab9447f50c28075b4d3e5b269972345e7e0372b38c6cdcd" +checksum = "f30b0abd723be7e2ffca1272140fac1a2f084c77ec3e123c192b66af1ee9e6c2" dependencies = [ "autocfg", ] [[package]] name = "num_cpus" -version = "1.15.0" +version = "1.16.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0fac9e2da13b5eb447a6ce3d392f23a29d8694bff781bf03a16cd9ac8697593b" +checksum = "4161fcb6d602d4d2081af7c3a45852d875a03dd337a6bfdd6e06407b61342a43" dependencies = [ "hermit-abi", "libc", @@ -659,11 +716,20 @@ dependencies = [ "pyo3", ] +[[package]] +name = "object" +version = "0.31.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8bda667d9f2b5051b8833f59f3bf748b28ef54f850f4fcb389a252aa383866d1" +dependencies = [ + "memchr", +] + [[package]] name = "once_cell" -version = "1.17.1" +version = "1.18.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3" +checksum = "dd8b5dd2ae5ed71462c540258bedcb51965123ad7e7ccf4b9a8cafaa4a63576d" [[package]] name = "parking_lot" @@ -683,7 +749,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3742b2c103b9f06bc9fff0a37ff4912935851bee6d36f3c02bcc755bcfec228f" dependencies = [ "lock_api", - "parking_lot_core 0.9.7", + "parking_lot_core 0.9.8", ] [[package]] @@ -695,35 +761,35 @@ dependencies = [ "cfg-if", "instant", "libc", - "redox_syscall", + "redox_syscall 0.2.16", "smallvec", "winapi", ] [[package]] name = "parking_lot_core" -version = "0.9.7" +version = "0.9.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9069cbb9f99e3a5083476ccb29ceb1de18b9118cafa53e90c9551235de2b9521" +checksum = "93f00c865fe7cabf650081affecd3871070f26767e7b2070a3ffae14c654b447" dependencies = [ "cfg-if", "libc", - "redox_syscall", + "redox_syscall 0.3.5", "smallvec", - "windows-sys 0.45.0", + "windows-targets", ] [[package]] name = "paste" -version = "1.0.12" +version = "1.0.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9f746c4065a8fa3fe23974dd82f15431cc8d40779821001404d10d2e79ca7d79" +checksum = "de3145af08024dea9fa9914f381a17b8fc6034dfb00f3a84013f7ff43f29ed4c" [[package]] name = "pin-project-lite" -version = "0.2.9" +version = "0.2.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e0a7ae3ac2f1173085d398531c705756c94a4c56843785df85a60c1a0afac116" +checksum = "4c40d25201921e5ff0c862a505c6557ea88568a4e3ace775ab55e93f2f4f9d57" [[package]] name = "pin-utils" @@ -778,9 +844,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.56" +version = "1.0.66" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b63bdb0cd06f1f4dedf69b254734f9b45af66e4a031e42a7480257d9898b435" +checksum = "18fb31db3f9bddb2ea821cde30a9f70117e3f119938b5ee630b7403aa6e2ead9" dependencies = [ "unicode-ident", ] @@ -848,9 +914,9 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.26" +version = "1.0.32" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4424af4bf778aae2051a77b60283332f386554255d722233d09fbfc7e30da2fc" +checksum = "50f3b39ccfb720540debaa0164757101c08ecb8d326b15358ce76a62c7e85965" dependencies = [ "proc-macro2", ] @@ -919,14 +985,35 @@ version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a" dependencies = [ - "bitflags", + "bitflags 1.3.2", +] + +[[package]] +name = "redox_syscall" +version = "0.3.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" +dependencies = [ + "bitflags 1.3.2", ] [[package]] name = "regex" -version = "1.8.1" +version = "1.9.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2eae68fc220f7cf2532e4494aded17545fce192d59cd996e0fe7887f4ceb575" +dependencies = [ + "aho-corasick", + "memchr", + "regex-automata", + "regex-syntax", +] + +[[package]] +name = "regex-automata" +version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af83e617f331cc6ae2da5443c602dfa5af81e517212d9d611a5b3ba1777b5370" +checksum = "39354c10dd07468c2e73926b23bb9c2caca74c5501e38a35da70406f1d923310" dependencies = [ "aho-corasick", "memchr", @@ -935,43 +1022,49 @@ dependencies = [ [[package]] name = "regex-syntax" -version = "0.7.1" +version = "0.7.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e5ea92a5b6195c6ef2a0295ea818b312502c6fc94dde986c5553242e18fd4ce2" + +[[package]] +name = "rustc-demangle" +version = "0.1.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a5996294f19bd3aae0453a862ad728f60e6600695733dd5df01da90c54363a3c" +checksum = "d626bb9dae77e28219937af045c257c28bfd3f69333c512553507f5f9798cb76" [[package]] name = "scopeguard" -version = "1.1.0" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd" +checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49" [[package]] name = "serde" -version = "1.0.160" +version = "1.0.176" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bb2f3770c8bce3bcda7e149193a069a0f4365bda1fa5cd88e03bca26afc1216c" +checksum = "76dc28c9523c5d70816e393136b86d48909cfb27cecaa902d338c19ed47164dc" dependencies = [ "serde_derive", ] [[package]] name = "serde_bytes" -version = "0.11.9" +version = "0.11.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "416bda436f9aab92e02c8e10d49a15ddd339cea90b6e340fe51ed97abb548294" +checksum = "ab33ec92f677585af6d88c65593ae2375adde54efdbf16d597f2cbc7a6d368ff" dependencies = [ "serde", ] [[package]] name = "serde_derive" -version = "1.0.160" +version = "1.0.176" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "291a097c63d8497e00160b166a967a4a79c64f3facdd01cbd7502231688d77df" +checksum = "a4e7b8c5dc823e3b90651ff1d3808419cd14e5ad76de04feaf37da114e7a306f" dependencies = [ "proc-macro2", "quote", - "syn 2.0.15", + "syn 2.0.27", ] [[package]] @@ -1001,9 +1094,9 @@ dependencies = [ [[package]] name = "smallvec" -version = "1.10.0" +version = "1.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a507befe795404456341dfab10cef66ead4c041f62b8b11bbb92bffe5d0953e0" +checksum = "62bb4feee49fdd9f707ef802e22365a35de4b7b299de4763d44bfea899442ff9" [[package]] name = "strength_reduce" @@ -1024,9 +1117,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.15" +version = "2.0.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a34fcf3e8b60f57e6a14301a2e916d323af98b0ea63c599441eec8558660c822" +checksum = "b60f673f44a8255b9c8c657daf66a596d435f2da81a555b06dc644d080ba45e0" dependencies = [ "proc-macro2", "quote", @@ -1035,21 +1128,21 @@ dependencies = [ [[package]] name = "target-lexicon" -version = "0.12.7" +version = "0.12.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fd1ba337640d60c3e96bc6f0638a939b9c9a7f2c316a1598c279828b3d1dc8c5" +checksum = "1d2faeef5759ab89935255b1a4cd98e0baf99d1085e37d36599c625dac49ae8e" [[package]] name = "tokio" -version = "1.28.0" +version = "1.29.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3c786bf8134e5a3a166db9b29ab8f48134739014a3eca7bc6bfa95d673b136f" +checksum = "532826ff75199d5833b9d2c5fe410f29235e25704ee5f0ef599fb51c21f4a4da" dependencies = [ "autocfg", + "backtrace", "num_cpus", "pin-project-lite", "tokio-macros", - "windows-sys 0.48.0", ] [[package]] @@ -1060,20 +1153,20 @@ checksum = "630bdcf245f78637c13ec01ffae6187cca34625e8c63150d424b59e55af2675e" dependencies = [ "proc-macro2", "quote", - "syn 2.0.15", + "syn 2.0.27", ] [[package]] name = "toml_datetime" -version = "0.6.1" +version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3ab8ed2edee10b50132aed5f331333428b011c99402b5a534154ed15746f9622" +checksum = "7cda73e2f1397b1262d6dfdcef8aafae14d1de7748d66822d3bfeeb6d03e5e4b" [[package]] name = "toml_edit" -version = "0.19.8" +version = "0.19.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "239410c8609e8125456927e6707163a3b1fdb40561e4b803bc041f466ccfdc13" +checksum = "f8123f27e969974a3dfba720fdb560be359f57b44302d280ba72e76a74480e8a" dependencies = [ "indexmap", "toml_datetime", @@ -1082,9 +1175,9 @@ dependencies = [ [[package]] name = "unicode-ident" -version = "1.0.8" +version = "1.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4" +checksum = "301abaae475aa91687eb82514b328ab47a211a533026cb25fc3e519b86adfc3c" [[package]] name = "unindent" @@ -1132,132 +1225,66 @@ version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" -[[package]] -name = "windows-sys" -version = "0.45.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0" -dependencies = [ - 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[[package]] name = "windows_aarch64_msvc" version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3" -[[package]] -name = "windows_i686_gnu" -version = "0.42.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" - [[package]] name = "windows_i686_gnu" version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241" -[[package]] -name = "windows_i686_msvc" -version = "0.42.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" - [[package]] name = "windows_i686_msvc" version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00" -[[package]] -name = "windows_x86_64_gnu" -version = "0.42.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" - [[package]] name = "windows_x86_64_gnu" version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1" -[[package]] -name = "windows_x86_64_gnullvm" -version = "0.42.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" - [[package]] name = "windows_x86_64_gnullvm" version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953" -[[package]] -name = "windows_x86_64_msvc" -version = "0.42.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" - [[package]] name = "windows_x86_64_msvc" version = "0.48.0" @@ -1266,21 +1293,22 @@ checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a" [[package]] name = "winnow" -version = "0.4.6" +version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "61de7bac303dc551fe038e2b3cef0f571087a47571ea6e79a87692ac99b99699" +checksum = "25b5872fa2e10bd067ae946f927e726d7d603eaeb6e02fa6a350e0722d2b8c11" dependencies = [ "memchr", ] [[package]] name = "winreg" -version = "0.10.1" +version = "0.50.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "80d0f4e272c85def139476380b12f9ac60926689dd2e01d4923222f40580869d" +checksum = "524e57b2c537c0f9b1e69f1965311ec12182b4122e45035b1508cd24d2adadb1" dependencies = [ + "cfg-if", "serde", - "winapi", + "windows-sys", ] [[package]] diff --git a/Cargo.toml b/Cargo.toml index 18949ac..d222237 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -53,9 +53,9 @@ rand = "0.8" sled = "0.34.6" [patch.crates-io] -hdf5 = { git = "https://github.com/magnusuMET/hdf5-rust", branch = "hidefix_jan_2023" } -hdf5-sys = { git = "https://github.com/magnusuMET/hdf5-rust", branch = "hidefix_jan_2023" } -hdf5-src = { git = "https://github.com/magnusuMET/hdf5-rust", branch = "hidefix_jan_2023" } +hdf5 = { git = "https://github.com/magnusuMET/hdf5-rust", branch = "hidefix_jul_2023" } +hdf5-sys = { git = "https://github.com/magnusuMET/hdf5-rust", branch = "hidefix_jul_2023" } +hdf5-src = { git = "https://github.com/magnusuMET/hdf5-rust", branch = "hidefix_jul_2023" } [profile.release] lto = 'thin' @@ -65,7 +65,7 @@ debug = true [features] default = ["static", "fast-index"] static = ["hdf5-sys/static", "hdf5-sys/zlib"] -fast-index = ["hdf5-src/1_14"] +fast-index = [] python = ["pyo3", "numpy"] extension-module = ["python", "pyo3/extension-module"] diff --git a/src/idx/chunk.rs b/src/idx/chunk.rs index 53eedc7..f7aa151 100644 --- a/src/idx/chunk.rs +++ b/src/idx/chunk.rs @@ -96,7 +96,7 @@ impl Chunk { /// Reintepret a slice of `Chunk`s to a slice of `u64`. This is efficient, but relies /// on unsafe code. pub fn slice_as_u64s(chunks: &[Chunk]) -> &[ULE] { - let ptr = chunks.as_ptr() as *const Chunk; + let ptr = chunks.as_ptr(); let slice: &[ULE] = unsafe { let ptr = ptr as *const ULE; std::slice::from_raw_parts(