From 46e392fe1cc821d85f1b48cc343824d55ab2b131 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Tue, 29 Aug 2023 23:10:40 -0700
Subject: [PATCH 01/16] new pydantic 2

---
 gplugins/devsim/doping.py                  | 10 ++--------
 gplugins/devsim/get_simulation_xsection.py |  8 ++------
 gplugins/tidy3d/modes.py                   |  8 ++------
 pyproject.toml                             | 12 ++++++------
 4 files changed, 12 insertions(+), 26 deletions(-)

diff --git a/gplugins/devsim/doping.py b/gplugins/devsim/doping.py
index fa134af8..96382c05 100644
--- a/gplugins/devsim/doping.py
+++ b/gplugins/devsim/doping.py
@@ -3,7 +3,7 @@
 import numpy as np
 from gdsfactory.generic_tech import LAYER
 from gdsfactory.typings import Layer
-from pydantic import BaseModel
+from pydantic import BaseModel, ConfigDict
 
 
 class DopingLayerLevel(BaseModel):
@@ -20,13 +20,7 @@ class DopingLayerLevel(BaseModel):
     layer: Layer
     type: str
     z_profile: Callable
-    # xy_profile: Optional[Callable] = None # not implemented yet
-
-    class Config:
-        """pydantic config."""
-
-        frozen = True
-        extra = "forbid"
+    model_config = ConfigDict(frozen=True, extra="forbid")
 
 
 cm3_to_um3 = 1e-12
diff --git a/gplugins/devsim/get_simulation_xsection.py b/gplugins/devsim/get_simulation_xsection.py
index 57ea374c..9f2c2782 100644
--- a/gplugins/devsim/get_simulation_xsection.py
+++ b/gplugins/devsim/get_simulation_xsection.py
@@ -20,7 +20,7 @@
 import pyvista as pv
 import tidy3d as td
 from devsim.python_packages import model_create, simple_physics
-from pydantic import BaseModel, Extra
+from pydantic import BaseModel, ConfigDict
 from scipy.interpolate import griddata
 
 from gplugins.tidy3d.materials import get_nk
@@ -171,11 +171,7 @@ class PINWaveguide(BaseModel):
     atol: float = 1e8
     rtol: float = 1e-8
     max_iter: int = 60
-
-    class Config:
-        """Enable adding new."""
-
-        extra = Extra.allow
+    model_config = ConfigDict(extra="allow")
 
     # @property
     # def t_sim(self):
diff --git a/gplugins/tidy3d/modes.py b/gplugins/tidy3d/modes.py
index 72e7e972..35b129f0 100644
--- a/gplugins/tidy3d/modes.py
+++ b/gplugins/tidy3d/modes.py
@@ -23,7 +23,7 @@
 import xarray
 from gdsfactory.config import PATH, logger
 from gdsfactory.typings import PathType
-from pydantic import BaseModel
+from pydantic import BaseModel, ConfigDict
 from tidy3d.plugins import waveguide
 from tqdm.auto import tqdm
 
@@ -155,11 +155,7 @@ class Waveguide(pydantic.BaseModel):
 
     _cached_data = pydantic.PrivateAttr()
     _waveguide = pydantic.PrivateAttr()
-
-    class Config:
-        """pydantic config."""
-
-        extra = "forbid"
+    model_config = ConfigDict(extra="forbid")
 
     @pydantic.validator("wavelength")
     def _fix_wavelength_type(cls, value):
diff --git a/pyproject.toml b/pyproject.toml
index a63806f8..91b747a3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -14,7 +14,7 @@ classifiers = [
   "Operating System :: OS Independent"
 ]
 dependencies = [
-  "gdsfactory[cad]>=7.3.2",
+  "gdsfactory[cad]>=7.4.0",
   "pint"
 ]
 description = "gdsfactory plugins"
@@ -50,7 +50,7 @@ dev = [
 devsim = [
   "devsim",
   "pyvista",
-  "tidy3d"
+  "tidy3d>=2.4.0rc2,<2.5.0"
 ]
 docs = [
   "jupytext",
@@ -77,11 +77,11 @@ klayout = [
   "kfactory[git,ipy]==0.7.5"
 ]
 meow = [
-  "meow-sim>=0.7.1,<0.8.0",
-  "tidy3d>=2.3.3,<2.4.0"
+  "meow-sim>0.7.2,<0.8.0",
+  "tidy3d>=2.4.0rc2,<2.5.0"
 ]
 sax = [
-  "sax>=0.8.8,<0.9.0",
+  "sax>=0.9.2,<0.10.0",
   "jaxlib",
   "jax",
   "scikit-learn"
@@ -91,7 +91,7 @@ schematic = [
   "natsort"
 ]
 tidy3d = [
-  "tidy3d>=2.3.3,<2.4.0"
+  "tidy3d>=2.4.0rc,<2.5.0"
 ]
 web = [
   "jinja2",

From 17ac782c68706d3c155b85a084d96b940cf35271 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 09:40:27 -0700
Subject: [PATCH 02/16] fix pyproject

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 91b747a3..df5cf32e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -77,7 +77,7 @@ klayout = [
   "kfactory[git,ipy]==0.7.5"
 ]
 meow = [
-  "meow-sim>0.7.2,<0.8.0",
+  "meow-sim>=0.7.2,<0.8.0",
   "tidy3d>=2.4.0rc2,<2.5.0"
 ]
 sax = [

From ca97c260b3718e116ebd8e6808a1792076b653aa Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 10:00:57 -0700
Subject: [PATCH 03/16] update kfactory

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index df5cf32e..c4eb580e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -74,7 +74,7 @@ gmsh = [
   "meshwell>=0.0.9,<0.3.1"
 ]
 klayout = [
-  "kfactory[git,ipy]==0.7.5"
+  "kfactory[git,ipy]>=0.8.4,<0.9"
 ]
 meow = [
   "meow-sim>=0.7.2,<0.8.0",

From f704862d507d7b0d57a4ff7d843783397643bd3a Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 10:03:48 -0700
Subject: [PATCH 04/16] using meow install from git

---
 Makefile | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Makefile b/Makefile
index f30c0ca2..00d41cfa 100644
--- a/Makefile
+++ b/Makefile
@@ -1,6 +1,7 @@
 
 install:
 	pip install -e .[dev,docs,database,devsim,femwell,gmsh,meow,meshwell,ray,sax,schematic,tidy3d,web]
+	pip install git+https://github.com/flaport/meow
 	pre-commit install
 
 dev: test-data meep gmsh elmer install

From 998fd41cb63aadea2e6a85649ddad89c78d23ac3 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 11:12:22 -0700
Subject: [PATCH 05/16] fix mode solver

---
 Makefile                     |  1 -
 gplugins/tidy3d/materials.py |  3 ++-
 gplugins/tidy3d/modes.py     | 26 ++++++++++++++++++--------
 pyproject.toml               |  2 +-
 4 files changed, 21 insertions(+), 11 deletions(-)

diff --git a/Makefile b/Makefile
index 00d41cfa..f30c0ca2 100644
--- a/Makefile
+++ b/Makefile
@@ -1,7 +1,6 @@
 
 install:
 	pip install -e .[dev,docs,database,devsim,femwell,gmsh,meow,meshwell,ray,sax,schematic,tidy3d,web]
-	pip install git+https://github.com/flaport/meow
 	pre-commit install
 
 dev: test-data meep gmsh elmer install
diff --git a/gplugins/tidy3d/materials.py b/gplugins/tidy3d/materials.py
index c8f53344..0af4ceac 100644
--- a/gplugins/tidy3d/materials.py
+++ b/gplugins/tidy3d/materials.py
@@ -115,5 +115,6 @@ def get_medium(spec: MaterialSpecTidy3d) -> td.Medium:
     # print(get_index(spec="si"))
     # print(get_index(spec=3.4))
     # m = get_medium("SiO2")
-    m = get_medium(("cSi", "Li1993_293K"))
+    # m = get_medium(("cSi", "Li1993_293K"))
     # m = td.Medium(permittivity=1.45 ** 2)
+    m = get_medium(td.material_library["cSi"]["Li1993_293K"])
diff --git a/gplugins/tidy3d/modes.py b/gplugins/tidy3d/modes.py
index 35b129f0..15abd27a 100644
--- a/gplugins/tidy3d/modes.py
+++ b/gplugins/tidy3d/modes.py
@@ -23,7 +23,7 @@
 import xarray
 from gdsfactory.config import PATH, logger
 from gdsfactory.typings import PathType
-from pydantic import BaseModel, ConfigDict
+from pydantic import BaseModel, ConfigDict, field_validator
 from tidy3d.plugins import waveguide
 from tqdm.auto import tqdm
 
@@ -58,7 +58,7 @@ def custom_serializer(data: str | float | BaseModel) -> str:
     raise ValueError(f"Unsupported data type: {type(data)}")
 
 
-class Waveguide(pydantic.BaseModel):
+class Waveguide(BaseModel):
     """Waveguide Model.
 
     All dimensions must be specified in μm (1e-6 m).
@@ -157,9 +157,19 @@ class Waveguide(pydantic.BaseModel):
     _waveguide = pydantic.PrivateAttr()
     model_config = ConfigDict(extra="forbid")
 
-    @pydantic.validator("wavelength")
-    def _fix_wavelength_type(cls, value):
-        return np.array(value, dtype=float)
+    @field_validator("wavelength")
+    @classmethod
+    def _fix_wavelength_type(cls, v):
+        return np.array(v, dtype=float)
+
+    # @field_validator("box_material", "clad_material", "core_material")
+    # @classmethod
+    # def _validate_material(cls, v) -> td.Medium:
+    #     if isinstance(v, td.CustomMedium | td.Medium):
+    #         medium = v
+    #     else:
+    #         medium = get_medium(v)
+    #     return medium
 
     @property
     def filepath(self) -> pathlib.Path | None:
@@ -268,7 +278,7 @@ def _data(self):
 
             wg = self.waveguide
 
-            fields = wg.mode_solver.data._centered_fields
+            fields = wg.mode_solver.data.field_components
             self._cached_data = {
                 f + c: fields[f + c].squeeze(drop=True).values
                 for f in "EH"
@@ -1008,8 +1018,8 @@ def sweep_coupling_length(
         wavelength=1.55,
         core_width=1.0,
         slab_thickness=0.0,
-        # core_material="si",
-        core_material=td.material_library["cSi"]["Li1993_293K"],
+        core_material="si",
+        # core_material=td.material_library["cSi"]["Li1993_293K"],
         clad_material="sio2",
         core_thickness=220 * nm,
         num_modes=4,
diff --git a/pyproject.toml b/pyproject.toml
index c4eb580e..80f01656 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -91,7 +91,7 @@ schematic = [
   "natsort"
 ]
 tidy3d = [
-  "tidy3d>=2.4.0rc,<2.5.0"
+  "tidy3d>=2.4.0rc2,<2.5.0"
 ]
 web = [
   "jinja2",

From 410f815329519ff62d445d1e4e0542792261a8e4 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 11:14:23 -0700
Subject: [PATCH 06/16] update meow

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 80f01656..a902eeaf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -77,7 +77,7 @@ klayout = [
   "kfactory[git,ipy]>=0.8.4,<0.9"
 ]
 meow = [
-  "meow-sim>=0.7.2,<0.8.0",
+  "meow-sim>=0.7.3,<0.8.0",
   "tidy3d>=2.4.0rc2,<2.5.0"
 ]
 sax = [

From 107ea3c1984300316317649cff70250cae9b8b21 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 17:56:03 -0700
Subject: [PATCH 07/16] avoid mixing v1 and v2 pydantic models

---
 gplugins/tidy3d/modes.py | 20 +++++---------------
 1 file changed, 5 insertions(+), 15 deletions(-)

diff --git a/gplugins/tidy3d/modes.py b/gplugins/tidy3d/modes.py
index 15abd27a..0625168a 100644
--- a/gplugins/tidy3d/modes.py
+++ b/gplugins/tidy3d/modes.py
@@ -18,12 +18,12 @@
 from typing import Any, Literal
 
 import numpy as np
-import pydantic
+import pydantic.v1 as pydantic
 import tidy3d as td
 import xarray
 from gdsfactory.config import PATH, logger
 from gdsfactory.typings import PathType
-from pydantic import BaseModel, ConfigDict, field_validator
+from pydantic.v1 import BaseModel, ConfigDict
 from tidy3d.plugins import waveguide
 from tqdm.auto import tqdm
 
@@ -157,20 +157,10 @@ class Waveguide(BaseModel):
     _waveguide = pydantic.PrivateAttr()
     model_config = ConfigDict(extra="forbid")
 
-    @field_validator("wavelength")
-    @classmethod
+    @pydantic.validator("wavelength")
     def _fix_wavelength_type(cls, v):
         return np.array(v, dtype=float)
 
-    # @field_validator("box_material", "clad_material", "core_material")
-    # @classmethod
-    # def _validate_material(cls, v) -> td.Medium:
-    #     if isinstance(v, td.CustomMedium | td.Medium):
-    #         medium = v
-    #     else:
-    #         medium = get_medium(v)
-    #     return medium
-
     @property
     def filepath(self) -> pathlib.Path | None:
         """Cache file path"""
@@ -1018,8 +1008,8 @@ def sweep_coupling_length(
         wavelength=1.55,
         core_width=1.0,
         slab_thickness=0.0,
-        core_material="si",
-        # core_material=td.material_library["cSi"]["Li1993_293K"],
+        # core_material="si",
+        core_material=td.material_library["cSi"]["Li1993_293K"],
         clad_material="sio2",
         core_thickness=220 * nm,
         num_modes=4,

From 6a756065de7e73e8d63aaef5e140e999861ee134 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Wed, 30 Aug 2023 18:00:20 -0700
Subject: [PATCH 08/16] fix materials test

---
 gplugins/tidy3d/tests/test_materials.py | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gplugins/tidy3d/tests/test_materials.py b/gplugins/tidy3d/tests/test_materials.py
index b3534bd3..b0ec8af3 100644
--- a/gplugins/tidy3d/tests/test_materials.py
+++ b/gplugins/tidy3d/tests/test_materials.py
@@ -2,7 +2,7 @@
 
 import pytest
 import tidy3d as td
-from pydantic import ValidationError
+from pydantic.v1 import ValidationError
 
 import gplugins.tidy3d as gt
 
@@ -66,8 +66,8 @@ def test_material_library_many_variants() -> None:
 
 def test_material_library_single_variant() -> None:
     strip = gt.modes.Waveguide(
-        core_material="SiO2",
-        clad_material="sio2",
+        core_material="AlxOy",
+        clad_material="AlxOy",
         **settings,
     )
     strip._data
@@ -84,6 +84,7 @@ def test_material_library() -> None:
 
 if __name__ == "__main__":
     pytest.main([__file__])
+    # test_material_validation_error()
     # test_material_medium()
     # test_material_float()
     # test_material_library()

From ae4888940f35cea2ff1b7576feb227d0ebb9098c Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 07:27:23 -0700
Subject: [PATCH 09/16] remove autodoc_pydantic

---
 pyproject.toml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index a902eeaf..8736711a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,7 +54,6 @@ devsim = [
 ]
 docs = [
   "jupytext",
-  "autodoc_pydantic",
   "matplotlib",
   "jupyter-book==0.15.1",
   "pyvista[jupyter]"

From 66a9fed4c9bf35625e3ffc60d7d2df9f74862319 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 07:45:08 -0700
Subject: [PATCH 10/16] don't install dagster

---
 pyproject.toml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 8736711a..fa59f4f2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -26,11 +26,10 @@ requires-python = ">=3.10"
 version = "0.3.1"
 
 [project.optional-dependencies]
+dagster = ["dagster", "dagit"]
 database = [
   "sqlalchemy",
   "sqlalchemy-utils",
-  "dagster",
-  "dagit",
   "sqlmodel",
   "boto3",
   "pymysql"

From 6fbec01c7f4fffc19f3b30ca5771453bc8a7945e Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 08:11:39 -0700
Subject: [PATCH 11/16] improve docs

---
 docs/notebooks/tidy3d_01_tidy3d_modes.py | 10 ++++------
 gplugins/tidy3d/modes.py                 | 15 ++++++++-------
 pyproject.toml                           |  2 +-
 3 files changed, 13 insertions(+), 14 deletions(-)

diff --git a/docs/notebooks/tidy3d_01_tidy3d_modes.py b/docs/notebooks/tidy3d_01_tidy3d_modes.py
index b1fb8e3d..9149dca2 100644
--- a/docs/notebooks/tidy3d_01_tidy3d_modes.py
+++ b/docs/notebooks/tidy3d_01_tidy3d_modes.py
@@ -47,14 +47,12 @@
 )  # get the index of a material with a given refractive index float
 
 # %%
-gt.materials.get_index(
-    "SiO2"
-)  # get the index of a material with a name string, for the case that the refractive index has only one variant
+# get the index of a material with a name string, for the case that the refractive index has only one variant
+gt.materials.get_index("AlxOy")
 
 # %%
-gt.materials.get_index(
-    ("cSi", "Li1993_293K")
-)  # get the index of a material with a name string, for the case that the refractive index has more than one variant
+# get the index of a material with a name string, for the case that the refractive index has more than one variant
+gt.materials.get_index(("cSi", "Li1993_293K"))
 
 # %% [markdown]
 # ## Waveguides
diff --git a/gplugins/tidy3d/modes.py b/gplugins/tidy3d/modes.py
index 0625168a..b84a0ef7 100644
--- a/gplugins/tidy3d/modes.py
+++ b/gplugins/tidy3d/modes.py
@@ -373,13 +373,14 @@ def plot_grid(self) -> None:
         """Plot the waveguide grid."""
         self.waveguide.plot_grid(z=0)
 
-    def plot_index(self, **kwargs) -> None:
+    def plot_index(self, **kwargs):
         """Plot the waveguide index distribution.
 
         Keyword arguments are passed to xarray.DataArray.plot.
         """
         artist = self.index.real.plot(**kwargs)
         artist.axes.set_aspect("equal")
+        return artist
 
     def plot_field(
         self,
@@ -388,7 +389,7 @@ def plot_field(
         mode_index: int = 0,
         wavelength: float | None = None,
         **kwargs,
-    ) -> None:
+    ):
         """Plot the selected field distribution from a waveguide mode.
 
         Parameters:
@@ -441,6 +442,7 @@ def plot_field(
         data_array.name = field_name
         artist = data_array.plot(**kwargs)
         artist.axes.set_aspect("equal")
+        return artist
 
     def _ipython_display_(self) -> None:
         """Show index in matplotlib for Jupyter Notebooks."""
@@ -1002,14 +1004,13 @@ def sweep_coupling_length(
     #     overwrite=True
     # )
 
-    import matplotlib.pyplot as plt
-
     strip = Waveguide(
         wavelength=1.55,
         core_width=1.0,
         slab_thickness=0.0,
         # core_material="si",
-        core_material=td.material_library["cSi"]["Li1993_293K"],
+        # core_material=td.material_library["cSi"]["Li1993_293K"],
+        core_material=3.47,
         clad_material="sio2",
         core_thickness=220 * nm,
         num_modes=4,
@@ -1017,8 +1018,8 @@ def sweep_coupling_length(
     # strip._data
     # strip.filepath
     # strip.plot_index()
-    strip.plot_field("Ex", mode_index=0, wavelength=1.55, value="dB")
-    plt.show()
+    # strip.plot_field("Ex", mode_index=0, wavelength=1.55, value="dB")
+    # plt.show()
     # w = np.linspace(400 * nm, 1000 * nm, 7)
     # n_eff = sweep_n_eff(strip, core_width=w)
     # fraction_te = sweep_fraction_te(strip, core_width=w)
diff --git a/pyproject.toml b/pyproject.toml
index fa59f4f2..ac5b7fe3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -94,7 +94,7 @@ tidy3d = [
 web = [
   "jinja2",
   "python-multipart",
-  "fastapi",
+  "fastapi>=0.102.0,<1",
   "uvicorn[standard]"
 ]
 

From f2994721659b2d065cfc852a634aaae97ca0e2c2 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 08:36:12 -0700
Subject: [PATCH 12/16] remove ray

---
 pyproject.toml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index ac5b7fe3..6d5d82a4 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -43,7 +43,6 @@ dev = [
   "mypy",
   "pyswarms",
   "autograd",
-  "ray[tune,air]",
   "hyperopt"
 ]
 devsim = [

From 10879bfb3ad963feaeda0b335cc519627fe35cdf Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 08:45:46 -0700
Subject: [PATCH 13/16] add ray and pin sqlmodel

---
 pyproject.toml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 6d5d82a4..532764be 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -30,7 +30,7 @@ dagster = ["dagster", "dagit"]
 database = [
   "sqlalchemy",
   "sqlalchemy-utils",
-  "sqlmodel",
+  "sqlmodel>=0.0.8,<0.1",
   "boto3",
   "pymysql"
 ]
@@ -43,7 +43,8 @@ dev = [
   "mypy",
   "pyswarms",
   "autograd",
-  "hyperopt"
+  "hyperopt",
+  "ray"
 ]
 devsim = [
   "devsim",

From 7b1ac2b84714383807d91ee6beeb678c933bd695 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 09:08:05 -0700
Subject: [PATCH 14/16] remove sqlmodel

---
 pyproject.toml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 532764be..438cc1f0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -30,7 +30,7 @@ dagster = ["dagster", "dagit"]
 database = [
   "sqlalchemy",
   "sqlalchemy-utils",
-  "sqlmodel>=0.0.8,<0.1",
+  # "sqlmodel>=0.0.8,<0.1",
   "boto3",
   "pymysql"
 ]
@@ -134,6 +134,7 @@ strict = true
 addopts = '--tb=short'
 norecursedirs = [
   "extra/*.py",
+  'gplugins/database',
   'gplugins/devsim',
   'gplugins/sax/integrations',
   'gplugins/tidy3d/tests/tests_sparameters'

From ed328109969a5c57b4ead1d0e62c9a8dda7eb8e1 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 09:23:25 -0700
Subject: [PATCH 15/16] remove dagster

---
 pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pyproject.toml b/pyproject.toml
index 438cc1f0..f552f810 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -134,6 +134,7 @@ strict = true
 addopts = '--tb=short'
 norecursedirs = [
   "extra/*.py",
+  'gplugins/dagster',
   'gplugins/database',
   'gplugins/devsim',
   'gplugins/sax/integrations',

From 65070e6842c72e05dc420f8feb22dab270c74375 Mon Sep 17 00:00:00 2001
From: Joaquin Matres <4514346+joamatab@users.noreply.github.com>
Date: Thu, 31 Aug 2023 09:32:00 -0700
Subject: [PATCH 16/16] remove autodoc_pydantic from docs

---
 docs/_config.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/docs/_config.yml b/docs/_config.yml
index 31592134..f40958a5 100755
--- a/docs/_config.yml
+++ b/docs/_config.yml
@@ -60,7 +60,6 @@ sphinx:
     - "sphinx.ext.napoleon"
     - "sphinx.ext.viewcode"
     - "matplotlib.sphinxext.plot_directive"
-    - "sphinxcontrib.autodoc_pydantic"
     - "sphinxcontrib.bibtex"
   config:
     #autodoc_typehints: description