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<!DOCTYPE html>
<!--
| Generated by Apache Maven Doxia at 2015-07-01 06:02:46
| Rendered using Apache Maven Fluido Skin 1.3.1
-->
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<meta charset="UTF-8" />
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<title>Geex – Project Dependencies</title>
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<h2>Geex</h2>
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<li id="publishDate" class="pull-right">Last Published: 2015-07-01 06:02:46</li>
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<a name="Project_Dependencies"></a>
<div class="section">
<h2><a name="Project_Dependencies"></a>Project Dependencies</h2><a name="Project_Dependencies_compile"></a>
<div class="section">
<h3><a name="compile"></a>compile</h3>
<p>The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:</p>
<table border="0" class="table table-striped">
<tr class="a">
<th>GroupId</th>
<th>ArtifactId</th>
<th>Version</th>
<th>Type</th>
<th>License</th></tr>
<tr class="b">
<td>commons-collections</td>
<td><a class="externalLink" href="http://commons.apache.org/collections/">commons-collections</a></td>
<td>3.2.1</td>
<td>jar</td>
<td><a class="externalLink" href="http://www.apache.org/licenses/LICENSE-2.0.txt">The Apache Software License, Version 2.0</a></td></tr>
<tr class="a">
<td>commons-lang</td>
<td><a class="externalLink" href="http://commons.apache.org/lang/">commons-lang</a></td>
<td>2.6</td>
<td>jar</td>
<td><a class="externalLink" href="http://www.apache.org/licenses/LICENSE-2.0.txt">The Apache Software License, Version 2.0</a></td></tr></table></div><a name="Project_Dependencies_test"></a>
<div class="section">
<h3><a name="test"></a>test</h3>
<p>The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:</p>
<table border="0" class="table table-striped">
<tr class="a">
<th>GroupId</th>
<th>ArtifactId</th>
<th>Version</th>
<th>Type</th>
<th>License</th></tr>
<tr class="b">
<td>de.saxsys</td>
<td><a class="externalLink" href="http://www.saxsys.de">jfx-testrunner</a></td>
<td>1.1</td>
<td>jar</td>
<td><a class="externalLink" href="http://www.apache.org/licenses/LICENSE-2.0.txt">The Apache Software License, Version 2.0</a></td></tr>
<tr class="a">
<td>junit</td>
<td><a class="externalLink" href="http://junit.org">junit</a></td>
<td>4.11</td>
<td>jar</td>
<td><a class="externalLink" href="http://www.opensource.org/licenses/cpl1.0.txt">Common Public License Version 1.0</a></td></tr>
<tr class="b">
<td>org.mockito</td>
<td><a class="externalLink" href="http://www.mockito.org">mockito-all</a></td>
<td>1.9.5</td>
<td>jar</td>
<td><a class="externalLink" href="http://code.google.com/p/mockito/wiki/License">The MIT License</a></td></tr></table></div></div><a name="Project_Transitive_Dependencies"></a>
<div class="section">
<h2><a name="Project_Transitive_Dependencies"></a>Project Transitive Dependencies</h2>
<p>The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.</p><a name="Project_Transitive_Dependencies_test"></a>
<div class="section">
<h3><a name="test"></a>test</h3>
<p>The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:</p>
<table border="0" class="table table-striped">
<tr class="a">
<th>GroupId</th>
<th>ArtifactId</th>
<th>Version</th>
<th>Type</th>
<th>License</th></tr>
<tr class="b">
<td>org.hamcrest</td>
<td><a class="externalLink" href="https://github.com/hamcrest/JavaHamcrest/hamcrest-core">hamcrest-core</a></td>
<td>1.3</td>
<td>jar</td>
<td><a class="externalLink" href="http://www.opensource.org/licenses/bsd-license.php">New BSD License</a></td></tr></table></div></div><a name="Project_Dependency_Graph"></a>
<div class="section">
<h2><a name="Project_Dependency_Graph"></a>Project Dependency Graph</h2><script language="javascript" type="text/javascript">
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<a name="Dependency_Tree"></a>
<div class="section">
<h3><a name="Dependency_Tree"></a>Dependency Tree</h3>
<ul>
<li>nl.tudelft.context:geex:pom:1.0 <img id="_img1" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep0', '_img1' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep0" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>Geex</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>The application will specialize in comparative DNA sequence analysis on a large numbers of genomes.
This can not only be used to find convergent evolution and parallel evolution
but also has shown potential for unraveling the function of noncoding sequence.
By making the genome browser interactive with semantic zooming we make it possible
to quickly identify which parts of the data are relevant for research and allow omitting
non-relevant information at certain levels. We can also use semantic zooming to annotate parts of the data.</p>
<p><b>URL: </b><a class="externalLink" href="http://github.com/AbeelLab/geex">http://github.com/AbeelLab/geex</a></p>
<p><b>Project License: </b>No license is defined for this project.</p></td></tr></table></div>
<ul>
<li>junit:junit:jar:4.11 (test) <img id="_img3" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep2', '_img3' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep2" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>JUnit</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>JUnit is a regression testing framework written by Erich Gamma and Kent Beck.
It is used by the developer who implements unit tests in Java.</p>
<p><b>URL: </b><a class="externalLink" href="http://junit.org">http://junit.org</a></p>
<p><b>Project License: </b><a class="externalLink" href="http://www.opensource.org/licenses/cpl1.0.txt">Common Public License Version 1.0</a></p></td></tr></table></div>
<ul>
<li>org.hamcrest:hamcrest-core:jar:1.3 (test) <img id="_img5" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep4', '_img5' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep4" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>Hamcrest Core</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations.</p>
<p><b>URL: </b><a class="externalLink" href="https://github.com/hamcrest/JavaHamcrest/hamcrest-core">https://github.com/hamcrest/JavaHamcrest/hamcrest-core</a></p>
<p><b>Project License: </b><a class="externalLink" href="http://www.opensource.org/licenses/bsd-license.php">New BSD License</a></p></td></tr></table></div></li></ul></li>
<li>org.mockito:mockito-all:jar:1.9.5 (test) <img id="_img7" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep6', '_img7' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep6" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>Mockito</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>Mock objects library for java</p>
<p><b>URL: </b><a class="externalLink" href="http://www.mockito.org">http://www.mockito.org</a></p>
<p><b>Project License: </b><a class="externalLink" href="http://code.google.com/p/mockito/wiki/License">The MIT License</a></p></td></tr></table></div></li>
<li>de.saxsys:jfx-testrunner:jar:1.1 (test) <img id="_img9" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep8', '_img9' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep8" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>jfx-testrunner</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>JUnit Testrunner for JavaFX Tests</p>
<p><b>URL: </b><a class="externalLink" href="http://www.saxsys.de">http://www.saxsys.de</a></p>
<p><b>Project License: </b><a class="externalLink" href="http://www.apache.org/licenses/LICENSE-2.0.txt">The Apache Software License, Version 2.0</a></p></td></tr></table></div></li>
<li>commons-lang:commons-lang:jar:2.6 (compile) <img id="_img11" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep10', '_img11' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep10" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>Commons Lang</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>Commons Lang, a package of Java utility classes for the
classes that are in java.lang's hierarchy, or are considered to be so
standard as to justify existence in java.lang.</p>
<p><b>URL: </b><a class="externalLink" href="http://commons.apache.org/lang/">http://commons.apache.org/lang/</a></p>
<p><b>Project License: </b><a class="externalLink" href="http://www.apache.org/licenses/LICENSE-2.0.txt">The Apache Software License, Version 2.0</a></p></td></tr></table></div></li>
<li>commons-collections:commons-collections:jar:3.2.1 (compile) <img id="_img13" src="./images/icon_info_sml.gif" alt="Information" onclick="toggleDependencyDetail( '_dep12', '_img13' );" style="cursor: pointer;vertical-align:text-bottom;"></img><div id="_dep12" style="display:none">
<table border="0" class="table table-striped">
<tr class="a">
<th>Commons Collections</th></tr>
<tr class="b">
<td>
<p><b>Description: </b>Types that extend and augment the Java Collections Framework.</p>
<p><b>URL: </b><a class="externalLink" href="http://commons.apache.org/collections/">http://commons.apache.org/collections/</a></p>
<p><b>Project License: </b><a class="externalLink" href="http://www.apache.org/licenses/LICENSE-2.0.txt">The Apache Software License, Version 2.0</a></p></td></tr></table></div></li></ul></li></ul></div></div><a name="Licenses"></a>
<div class="section">
<h2><a name="Licenses"></a>Licenses</h2>
<p><b>Unknown: </b>Geex</p>
<p><b>The MIT License: </b>Mockito</p>
<p><b>New BSD License: </b>Hamcrest Core</p>
<p><b>Common Public License Version 1.0: </b>JUnit</p>
<p><b>The Apache Software License, Version 2.0: </b>Commons Collections, Commons Lang, jfx-testrunner</p></div><a name="Dependency_File_Details"></a>
<div class="section">
<h2><a name="Dependency_File_Details"></a>Dependency File Details</h2>
<table border="0" class="table table-striped">
<tr class="a">
<th>Filename</th>
<th>Size</th>
<th>Entries</th>
<th>Classes</th>
<th>Packages</th>
<th>Java Version</th>
<th title="Indicates whether these dependencies have been compiled with debug information.">Debug Information</th></tr>
<tr class="b">
<td>commons-collections-3.2.1.jar</td>
<td>575.39 kB</td>
<td>482</td>
<td>458</td>
<td>12</td>
<td>1.2</td>
<td>Yes</td></tr>
<tr class="a">
<td>commons-lang-2.6.jar</td>
<td>284.22 kB</td>
<td>155</td>
<td>133</td>
<td>10</td>
<td>1.3</td>
<td>Yes</td></tr>
<tr class="b">
<td>jfx-testrunner-1.1.jar</td>
<td>6.46 kB</td>
<td>14</td>
<td>1</td>
<td>1</td>
<td>1.6</td>
<td>No</td></tr>
<tr class="a">
<td>junit-4.11.jar</td>
<td>245.04 kB</td>
<td>266</td>
<td>233</td>
<td>28</td>
<td>1.5</td>
<td>Yes</td></tr>
<tr class="b">
<td>hamcrest-core-1.3.jar</td>
<td>45.02 kB</td>
<td>52</td>
<td>45</td>
<td>3</td>
<td>1.5</td>
<td>Yes</td></tr>
<tr class="a">
<td>mockito-all-1.9.5.jar</td>
<td>1.58 MB</td>
<td>1372</td>
<td>698</td>
<td>74</td>
<td>1.5</td>
<td>Yes</td></tr>
<tr class="b">
<th>Total</th>
<th>Size</th>
<th>Entries</th>
<th>Classes</th>
<th>Packages</th>
<th>Java Version</th>
<th>Debug Information</th></tr>
<tr class="a">
<td>6</td>
<td>2.74 MB</td>
<td>2341</td>
<td>1568</td>
<td>128</td>
<td>1.6</td>
<td>5</td></tr>
<tr class="b">
<td>compile: 2</td>
<td>compile: 859.61 kB</td>
<td>compile: 637</td>
<td>compile: 591</td>
<td>compile: 22</td>
<td>-</td>
<td>compile: 2</td></tr>
<tr class="a">
<td>test: 4</td>
<td>test: 1.88 MB</td>
<td>test: 1704</td>
<td>test: 977</td>
<td>test: 106</td>
<td>-</td>
<td>test: 3</td></tr></table></div><a name="Dependency_Repository_Locations"></a>
<div class="section">
<h2><a name="Dependency_Repository_Locations"></a>Dependency Repository Locations</h2>
<table border="0" class="table table-striped">
<tr class="a">
<th>Repo ID</th>
<th>URL</th>
<th>Release</th>
<th>Snapshot</th></tr>
<tr class="b">
<td>central</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2">https://repo.maven.apache.org/maven2</a></td>
<td>Yes</td>
<td>No</td></tr>
<tr class="a">
<td>sonatype-nexus-snapshots</td>
<td><a class="externalLink" href="https://oss.sonatype.org/content/repositories/snapshots">https://oss.sonatype.org/content/repositories/snapshots</a></td>
<td>No</td>
<td>Yes</td></tr>
<tr class="b">
<td>apache.snapshots</td>
<td><a class="externalLink" href="http://repository.apache.org/snapshots">http://repository.apache.org/snapshots</a></td>
<td>No</td>
<td>Yes</td></tr></table>
<p>Repository locations for each of the Dependencies.</p>
<table border="0" class="table table-striped">
<tr class="a">
<th>Artifact</th>
<th>central</th>
<th>sonatype-nexus-snapshots</th>
<th>apache.snapshots</th></tr>
<tr class="b">
<td>commons-collections:commons-collections:jar:3.2.1</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar"><img alt="Found at https://repo.maven.apache.org/maven2" src="images/icon_success_sml.gif" /></a></td>
<td>-</td>
<td>-</td></tr>
<tr class="a">
<td>commons-lang:commons-lang:jar:2.6</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2/commons-lang/commons-lang/2.6/commons-lang-2.6.jar"><img alt="Found at https://repo.maven.apache.org/maven2" src="images/icon_success_sml.gif" /></a></td>
<td>-</td>
<td>-</td></tr>
<tr class="b">
<td>de.saxsys:jfx-testrunner:jar:1.1</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2/de/saxsys/jfx-testrunner/1.1/jfx-testrunner-1.1.jar"><img alt="Found at https://repo.maven.apache.org/maven2" src="images/icon_success_sml.gif" /></a></td>
<td>-</td>
<td>-</td></tr>
<tr class="a">
<td>junit:junit:jar:4.11</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2/junit/junit/4.11/junit-4.11.jar"><img alt="Found at https://repo.maven.apache.org/maven2" src="images/icon_success_sml.gif" /></a></td>
<td>-</td>
<td>-</td></tr>
<tr class="b">
<td>org.hamcrest:hamcrest-core:jar:1.3</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar"><img alt="Found at https://repo.maven.apache.org/maven2" src="images/icon_success_sml.gif" /></a></td>
<td>-</td>
<td>-</td></tr>
<tr class="a">
<td>org.mockito:mockito-all:jar:1.9.5</td>
<td><a class="externalLink" href="https://repo.maven.apache.org/maven2/org/mockito/mockito-all/1.9.5/mockito-all-1.9.5.jar"><img alt="Found at https://repo.maven.apache.org/maven2" src="images/icon_success_sml.gif" /></a></td>
<td>-</td>
<td>-</td></tr>
<tr class="b">
<th>Total</th>
<th>central</th>
<th>sonatype-nexus-snapshots</th>
<th>apache.snapshots</th></tr>
<tr class="a">
<td>6 (compile: 2, test: 4)</td>
<td>6</td>
<td>0</td>
<td>0</td></tr></table></div>
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