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index.html
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<!DOCTYPE html>
<!--
| Generated by Apache Maven Doxia at 2015-07-01 06:02:37
| Rendered using Apache Maven Fluido Skin 1.3.1
-->
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<meta charset="UTF-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<meta name="Date-Revision-yyyymmdd" content="20150701" />
<meta http-equiv="Content-Language" content="en" />
<title>Geex – About</title>
<link rel="stylesheet" href="./css/apache-maven-fluido-1.3.1.min.css" />
<link rel="stylesheet" href="./css/site.css" />
<link rel="stylesheet" href="./css/print.css" media="print" />
<script type="text/javascript" src="./js/apache-maven-fluido-1.3.1.min.js"></script>
</head>
<body class="topBarDisabled">
<div class="container-fluid">
<div id="banner">
<div class="pull-left">
<div id="bannerLeft">
<h2>Geex</h2>
</div>
</div>
<div class="pull-right"> </div>
<div class="clear"><hr/></div>
</div>
<div id="breadcrumbs">
<ul class="breadcrumb">
<li id="projectVersion">Version: 1.0
</li>
<li id="publishDate" class="pull-right">Last Published: 2015-07-01 06:02:37</li>
</ul>
</div>
<div class="row-fluid">
<div id="leftColumn" class="span3">
<div class="well sidebar-nav">
<ul class="nav nav-list">
<li class="nav-header">Modules</li>
<li>
<a href="geex-models/index.html" title="Geex Models">
<i class="none"></i>
Geex Models</a>
</li>
<li>
<a href="geex-core/index.html" title="Geex Core">
<i class="none"></i>
Geex Core</a>
</li>
<li>
<a href="geex-services/index.html" title="Geex Services">
<i class="none"></i>
Geex Services</a>
</li>
<li>
<a href="geex-workspace/index.html" title="Geex Workspace">
<i class="none"></i>
Geex Workspace</a>
</li>
<li>
<a href="geex-effects/index.html" title="Geex Effects">
<i class="none"></i>
Geex Effects</a>
</li>
<li>
<a href="geex-logger/index.html" title="Geex Logger">
<i class="none"></i>
Geex Logger</a>
</li>
<li class="nav-header">Project Documentation</li>
<li>
<a href="project-info.html" title="Project Information">
<i class="icon-chevron-down"></i>
Project Information</a>
<ul class="nav nav-list">
<li class="active">
<a href="#"><i class="none"></i>About</a>
</li>
<li>
<a href="dependencies.html" title="Dependencies">
<i class="none"></i>
Dependencies</a>
</li>
<li>
<a href="dependency-convergence.html" title="Dependency Convergence">
<i class="none"></i>
Dependency Convergence</a>
</li>
<li>
<a href="issue-tracking.html" title="Issue Tracking">
<i class="none"></i>
Issue Tracking</a>
</li>
<li>
<a href="source-repository.html" title="Source Repository">
<i class="none"></i>
Source Repository</a>
</li>
<li>
<a href="plugins.html" title="Project Plugins">
<i class="none"></i>
Project Plugins</a>
</li>
<li>
<a href="integration.html" title="Continuous Integration">
<i class="none"></i>
Continuous Integration</a>
</li>
</ul>
</li>
<li>
<a href="project-reports.html" title="Project Reports">
<i class="icon-chevron-right"></i>
Project Reports</a>
</li>
<li class="nav-header">Architecture</li>
<li>
<a href="architecture.html" title="UML Diagram">
<i class="none"></i>
UML Diagram</a>
</li>
</ul>
<hr />
<div id="poweredBy">
<div class="clear"></div>
<div class="clear"></div>
<div class="clear"></div>
<div class="clear"></div>
<a href="http://maven.apache.org/" title="Built by Maven" class="poweredBy">
<img class="builtBy" alt="Built by Maven" src="./images/logos/maven-feather.png" />
</a>
</div>
</div>
</div>
<div id="bodyColumn" class="span9" >
<div class="section">
<h2><a name="About_Geex"></a>About Geex</h2><a name="About_Geex"></a>
<p>The application will specialize in comparative DNA sequence analysis on a large numbers of genomes.
This can not only be used to find convergent evolution and parallel evolution
but also has shown potential for unraveling the function of noncoding sequence.
By making the genome browser interactive with semantic zooming we make it possible
to quickly identify which parts of the data are relevant for research and allow omitting
non-relevant information at certain levels. We can also use semantic zooming to annotate parts of the data.</p>
<div class="section">
<h3><a name="Project_Modules"></a>Project Modules</h3><a name="Project_Modules"></a>
<p>This project has declared the following modules:</p>
<table border="0" class="table table-striped">
<tr class="a">
<th>Name</th>
<th>Description</th></tr>
<tr class="b">
<td><a href="geex-models/index.html">Geex Models</a></td>
<td>Model package for the Geex project.</td></tr>
<tr class="a">
<td><a href="geex-core/index.html">Geex Core</a></td>
<td>Core packages for the Geex project.</td></tr>
<tr class="b">
<td><a href="geex-services/index.html">Geex Services</a></td>
<td>Service package for the Geex project.
These services are used to run tasks in the background.</td></tr>
<tr class="a">
<td><a href="geex-workspace/index.html">Geex Workspace</a></td>
<td>Workspace package for the Geex project.
The workspace is used for loading a directory of files and parsing them. This all happens in a background thread.</td></tr>
<tr class="b">
<td><a href="geex-effects/index.html">Geex Effects</a></td>
<td>Effects package for the Geex project.</td></tr>
<tr class="a">
<td><a href="geex-logger/index.html">Geex Logger</a></td>
<td>Logger package for the Geex project.</td></tr></table></div></div>
</div>
</div>
</div>
<hr/>
<footer>
<div class="container-fluid">
<div class="row-fluid">
<p >Copyright © 2015.
All rights reserved.
</p>
</div>
</div>
</footer>
</body>
</html>