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NTR: lipoate-dependent carrier activity #29771

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ValWood opened this issue Feb 21, 2025 · 2 comments
Open

NTR: lipoate-dependent carrier activity #29771

ValWood opened this issue Feb 21, 2025 · 2 comments

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@ValWood
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ValWood commented Feb 21, 2025

Please provide as much information as you can:

  • Suggested term label:

lipoate-dependent carrier activity

  • Definition (free text)

Mediating acyl group transfer and redox reactions through a covalently linked lipoate prosthetic group, facilitating interactions with cognate enzymes for processing or offloading of the acyl-bound or reduced lipoate intermediate.

source
based on proposed sibling def GO:0140414 phosphopantetheine-dependent carrier activity
def

(note to self make carrier protein activity broad synonym, and fix typo in covalently for GO:0140414)

  • Reference, in format PMID:#######
    (REQUIRED) (to follow need to find)

  • Gene product name and ID to be annotated to this term

https://www.pombase.org/gene/SPBP19A11.01
(I need for GO-CAM for glycine cleavage complex subunit H, but will also be used for other lipoate-dependent carriers)

  • Parent term(s)

GO:0140104 molecular carrier activity

  • Cross-references

  • For enzymes, please provide RHEA and/or EC numbers.

  • Can also provide MetaCyc, KEGG, Wikipedia, and other links.

  • Any other information

@ValWood
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ValWood commented Feb 21, 2025

I thought this was useful (for inputs and outputs)

Why is H-Protein a Carrier?

It carries intermediates
    The H-protein's covalently attached lipoic acid acts as a swinging arm to pick up and deliver reaction intermediates.
    It specifically carries the aminomethyl (-CH₂-NH₃⁺) group from P-protein to T-protein.

It undergoes cyclic modifications
    The lipoic acid on the H-protein cycles between:
        Oxidized (active) form
        Aminomethylated form (after reaction with glycine)
        Reduced (dihydrolipoamide) form (after interacting with T-protein)
    The L-protein then regenerates the oxidized state, allowing the cycle to continue.

It does not catalyze reactions itself
    Unlike enzymes (which actively catalyze chemical transformations), the H-protein simply transfers chemical groups between enzymes.

and from
https://www.uniprot.org/uniprotkb/Q9HDV9/entry
The H protein shuttles the methylamine group of glycine from the P protein to the T protein

but I still didn't find a reference yet

@deustp01
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deustp01 commented Feb 21, 2025

There is an exactly analogous carrier subprocess involved in the reactions mediated by the2-oxoacid (alpha-ketoacid) dehydrogenase complexes, whose ontology terms @sjm41 revised and reorganized a few months ago. Any useful precedents or references there?

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