diff --git a/python/json_export.py b/python/json_export.py
index 666e846..c5af6ed 100644
--- a/python/json_export.py
+++ b/python/json_export.py
@@ -3,8 +3,6 @@
 from pathlib import Path
 import os
 from prefixmaps import load_converter
-from ontobio.rdfgen.assoc_rdfgen import prefix_context
-#from prefixcommons.curie_util import contract_uri
 
 from curies import Converter, Record
 from pyshexc.parser_impl import generate_shexj
diff --git a/python/poetry.lock b/python/poetry.lock
index 0f128a8..ca8b804 100644
--- a/python/poetry.lock
+++ b/python/poetry.lock
@@ -27,36 +27,6 @@ docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
 tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
 tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
 
-[[package]]
-name = "bidict"
-version = "0.22.0"
-description = "The bidirectional mapping library for Python."
-optional = false
-python-versions = ">=3.7"
-files = [
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-    {file = "bidict-0.22.0.tar.gz", hash = "sha256:5c826b3e15e97cc6e615de295756847c282a79b79c5430d3bfc909b1ac9f5bd8"},
-]
-
-[[package]]
-name = "bleach"
-version = "5.0.1"
-description = "An easy safelist-based HTML-sanitizing tool."
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "bleach-5.0.1-py3-none-any.whl", hash = "sha256:085f7f33c15bd408dd9b17a4ad77c577db66d76203e5984b1bd59baeee948b2a"},
-    {file = "bleach-5.0.1.tar.gz", hash = "sha256:0d03255c47eb9bd2f26aa9bb7f2107732e7e8fe195ca2f64709fcf3b0a4a085c"},
-]
-
-[package.dependencies]
-six = ">=1.9.0"
-webencodings = "*"
-
-[package.extras]
-css = ["tinycss2 (>=1.1.0,<1.2)"]
-dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"]
-
 [[package]]
 name = "cachier"
 version = "1.5.4"
@@ -87,82 +57,6 @@ files = [
     {file = "certifi-2022.9.24.tar.gz", hash = "sha256:0d9c601124e5a6ba9712dbc60d9c53c21e34f5f641fe83002317394311bdce14"},
 ]
 
-[[package]]
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-description = "Foreign Function Interface for Python calling C code."
-optional = false
-python-versions = "*"
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-[package.dependencies]
-pycparser = "*"
-
 [[package]]
 name = "cfgraph"
 version = "0.2.1"
@@ -226,154 +120,6 @@ files = [
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
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-python-versions = "*"
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-
-[package.extras]
-test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
-
-[[package]]
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@@ -398,53 +144,6 @@ pandas = ["pandas"]
 rdflib = ["rdflib"]
 tests = ["coverage", "pytest"]
 
-[[package]]
-name = "cycler"
-version = "0.11.0"
-description = "Composable style cycles"
-optional = false
-python-versions = ">=3.6"
-files = [
-    {file = "cycler-0.11.0-py3-none-any.whl", hash = "sha256:3a27e95f763a428a739d2add979fa7494c912a32c17c4c38c4d5f082cad165a3"},
-    {file = "cycler-0.11.0.tar.gz", hash = "sha256:9c87405839a19696e837b3b818fed3f5f69f16f1eec1a1ad77e043dcea9c772f"},
-]
-
-[[package]]
-name = "dacite"
-version = "1.6.0"
-description = "Simple creation of data classes from dictionaries."
-optional = false
-python-versions = ">=3.6"
-files = [
-    {file = "dacite-1.6.0-py3-none-any.whl", hash = "sha256:4331535f7aabb505c732fa4c3c094313fc0a1d5ea19907bf4726a7819a68b93f"},
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-
-[package.extras]
-dev = ["black", "coveralls", "mypy", "pylint", "pytest (>=5)", "pytest-cov"]
-
-[[package]]
-name = "dataclasses"
-version = "0.6"
-description = "A backport of the dataclasses module for Python 3.6"
-optional = false
-python-versions = "*"
-files = [
-    {file = "dataclasses-0.6-py3-none-any.whl", hash = "sha256:454a69d788c7fda44efd71e259be79577822f5e3f53f029a22d08004e951dc9f"},
-    {file = "dataclasses-0.6.tar.gz", hash = "sha256:6988bd2b895eef432d562370bb707d540f32f7360ab13da45340101bc2307d84"},
-]
-
-[[package]]
-name = "decorator"
-version = "5.1.1"
-description = "Decorators for Humans"
-optional = false
-python-versions = ">=3.5"
-files = [
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-]
-
 [[package]]
 name = "deprecated"
 version = "1.2.13"
@@ -462,28 +161,6 @@ wrapt = ">=1.10,<2"
 [package.extras]
 dev = ["PyTest", "PyTest (<5)", "PyTest-Cov", "PyTest-Cov (<2.6)", "bump2version (<1)", "configparser (<5)", "importlib-metadata (<3)", "importlib-resources (<4)", "sphinx (<2)", "sphinxcontrib-websupport (<2)", "tox", "zipp (<2)"]
 
-[[package]]
-name = "diskcache"
-version = "5.4.0"
-description = "Disk Cache -- Disk and file backed persistent cache."
-optional = false
-python-versions = ">=3"
-files = [
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-]
-
-[[package]]
-name = "docutils"
-version = "0.19"
-description = "Docutils -- Python Documentation Utilities"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "docutils-0.19-py3-none-any.whl", hash = "sha256:5e1de4d849fee02c63b040a4a3fd567f4ab104defd8a5511fbbc24a8a017efbc"},
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-]
-
 [[package]]
 name = "exceptiongroup"
 version = "1.0.4"
@@ -498,31 +175,6 @@ files = [
 [package.extras]
 test = ["pytest (>=6)"]
 
-[[package]]
-name = "fonttools"
-version = "4.38.0"
-description = "Tools to manipulate font files"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "fonttools-4.38.0-py3-none-any.whl", hash = "sha256:820466f43c8be8c3009aef8b87e785014133508f0de64ec469e4efb643ae54fb"},
-    {file = "fonttools-4.38.0.zip", hash = "sha256:2bb244009f9bf3fa100fc3ead6aeb99febe5985fa20afbfbaa2f8946c2fbdaf1"},
-]
-
-[package.extras]
-all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"]
-graphite = ["lz4 (>=1.7.4.2)"]
-interpolatable = ["munkres", "scipy"]
-lxml = ["lxml (>=4.0,<5)"]
-pathops = ["skia-pathops (>=0.5.0)"]
-plot = ["matplotlib"]
-repacker = ["uharfbuzz (>=0.23.0)"]
-symfont = ["sympy"]
-type1 = ["xattr"]
-ufo = ["fs (>=2.2.0,<3)"]
-unicode = ["unicodedata2 (>=14.0.0)"]
-woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
-
 [[package]]
 name = "hbreader"
 version = "0.9.1"
@@ -545,25 +197,6 @@ files = [
     {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"},
 ]
 
-[[package]]
-name = "importlib-metadata"
-version = "5.0.0"
-description = "Read metadata from Python packages"
-optional = false
-python-versions = ">=3.7"
-files = [
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-]
-
-[package.dependencies]
-zipp = ">=0.5"
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
-perf = ["ipython"]
-testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
-
 [[package]]
 name = "iniconfig"
 version = "1.1.1"
@@ -589,49 +222,6 @@ files = [
 [package.dependencies]
 six = "*"
 
-[[package]]
-name = "jaraco-classes"
-version = "3.2.3"
-description = "Utility functions for Python class constructs"
-optional = false
-python-versions = ">=3.7"
-files = [
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-
-[package.dependencies]
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-
-[package.extras]
-docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
-testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
-
-[[package]]
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-version = "0.8.0"
-description = "Low-level, pure Python DBus protocol wrapper."
-optional = false
-python-versions = ">=3.7"
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-trio = ["async_generator", "trio"]
-
-[[package]]
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-
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@@ -672,37 +262,6 @@ files = [
 [package.dependencies]
 hbreader = "*"
 
-[[package]]
-name = "jsonpath-rw"
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-
-[[package]]
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-optional = false
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-testing-libs = ["simplejson", "ujson", "yajl"]
-
 [[package]]
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 version = "4.17.0"
@@ -722,105 +281,6 @@ pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
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-
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 testing = ["pytest", "pytest-benchmark"]
 
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-    {file = "scipy-1.9.3.tar.gz", hash = "sha256:fbc5c05c85c1a02be77b1ff591087c83bc44579c6d2bd9fb798bb64ea5e1a027"},
-]
-
-[package.dependencies]
-numpy = ">=1.18.5,<1.26.0"
-
-[package.extras]
-dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"]
-doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"]
-test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
-
-[[package]]
-name = "secretstorage"
-version = "3.3.3"
-description = "Python bindings to FreeDesktop.org Secret Service API"
-optional = false
-python-versions = ">=3.6"
-files = [
-    {file = "SecretStorage-3.3.3-py3-none-any.whl", hash = "sha256:f356e6628222568e3af06f2eba8df495efa13b3b63081dafd4f7d9a7b7bc9f99"},
-    {file = "SecretStorage-3.3.3.tar.gz", hash = "sha256:2403533ef369eca6d2ba81718576c5e0f564d5cca1b58f73a8b23e7d4eeebd77"},
-]
-
-[package.dependencies]
-cryptography = ">=2.0"
-jeepney = ">=0.6"
-
 [[package]]
 name = "setuptools"
 version = "65.5.1"
@@ -1941,20 +828,6 @@ docs = ["sphinx (<5)", "sphinx-rtd-theme"]
 keepalive = ["keepalive (>=0.5)"]
 pandas = ["pandas (>=1.3.5)"]
 
-[[package]]
-name = "tenacity"
-version = "8.1.0"
-description = "Retry code until it succeeds"
-optional = false
-python-versions = ">=3.6"
-files = [
-    {file = "tenacity-8.1.0-py3-none-any.whl", hash = "sha256:35525cd47f82830069f0d6b73f7eb83bc5b73ee2fff0437952cedf98b27653ac"},
-    {file = "tenacity-8.1.0.tar.gz", hash = "sha256:e48c437fdf9340f5666b92cd7990e96bc5fc955e1298baf4a907e3972067a445"},
-]
-
-[package.extras]
-doc = ["reno", "sphinx", "tornado (>=4.5)"]
-
 [[package]]
 name = "tomli"
 version = "2.0.1"
@@ -1966,28 +839,6 @@ files = [
     {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
 ]
 
-[[package]]
-name = "twine"
-version = "4.0.1"
-description = "Collection of utilities for publishing packages on PyPI"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "twine-4.0.1-py3-none-any.whl", hash = "sha256:42026c18e394eac3e06693ee52010baa5313e4811d5a11050e7d48436cf41b9e"},
-    {file = "twine-4.0.1.tar.gz", hash = "sha256:96b1cf12f7ae611a4a40b6ae8e9570215daff0611828f5fe1f37a16255ab24a0"},
-]
-
-[package.dependencies]
-importlib-metadata = ">=3.6"
-keyring = ">=15.1"
-pkginfo = ">=1.8.1"
-readme-renderer = ">=35.0"
-requests = ">=2.20"
-requests-toolbelt = ">=0.8.0,<0.9.0 || >0.9.0"
-rfc3986 = ">=1.4.0"
-rich = ">=12.0.0"
-urllib3 = ">=1.26.0"
-
 [[package]]
 name = "typing-extensions"
 version = "4.4.0"
@@ -2052,31 +903,6 @@ files = [
 [package.extras]
 watchmedo = ["PyYAML (>=3.10)"]
 
-[[package]]
-name = "webencodings"
-version = "0.5.1"
-description = "Character encoding aliases for legacy web content"
-optional = false
-python-versions = "*"
-files = [
-    {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"},
-    {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"},
-]
-
-[[package]]
-name = "wheel"
-version = "0.38.4"
-description = "A built-package format for Python"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "wheel-0.38.4-py3-none-any.whl", hash = "sha256:b60533f3f5d530e971d6737ca6d58681ee434818fab630c83a734bb10c083ce8"},
-    {file = "wheel-0.38.4.tar.gz", hash = "sha256:965f5259b566725405b05e7cf774052044b1ed30119b5d586b2703aafe8719ac"},
-]
-
-[package.extras]
-test = ["pytest (>=3.0.0)"]
-
 [[package]]
 name = "wrapt"
 version = "1.14.1"
@@ -2160,36 +986,7 @@ files = [
     {file = "wrapt-1.14.1.tar.gz", hash = "sha256:380a85cf89e0e69b7cfbe2ea9f765f004ff419f34194018a6827ac0e3edfed4d"},
 ]
 
-[[package]]
-name = "yamldown"
-version = "0.1.8"
-description = "Python library for loading and dumping \"yamldown\" (markdown with embedded yaml) files."
-optional = false
-python-versions = "*"
-files = [
-    {file = "yamldown-0.1.8-py3-none-any.whl", hash = "sha256:936ad7bdbde725d0bd3adb77236aae4eb75388619f31232595f7dd45f7006598"},
-    {file = "yamldown-0.1.8.tar.gz", hash = "sha256:ec1056e5ec3c47a7c14f69d343b73256ad12751361f1a833805a8ee722cf883c"},
-]
-
-[package.dependencies]
-pyYaml = "*"
-
-[[package]]
-name = "zipp"
-version = "3.10.0"
-description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "zipp-3.10.0-py3-none-any.whl", hash = "sha256:4fcb6f278987a6605757302a6e40e896257570d11c51628968ccb2a47e80c6c1"},
-    {file = "zipp-3.10.0.tar.gz", hash = "sha256:7a7262fd930bd3e36c50b9a64897aec3fafff3dfdeec9623ae22b40e93f99bb8"},
-]
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
-testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
-
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9"
-content-hash = "98a2cd34fee228eea89fdb7f0cbdf9e78de245b9ed9feacafe4b5cb56ebb0ffe"
+content-hash = "e75560f141f9c3b088185f8b9f0dda43b95b6e14e75aefa0ab78a30203edc375"
diff --git a/python/pyproject.toml b/python/pyproject.toml
index 4a13c67..9be8567 100644
--- a/python/pyproject.toml
+++ b/python/pyproject.toml
@@ -11,7 +11,6 @@ rdflib = "^6.2.0"
 SPARQLWrapper = "^2.0.0"
 click = "^8.1.3"
 cachier = "^1.5.4"
-ontobio = "^2.8.3"
 pydantic = "^1.10.2"
 linkml-runtime = "^1.3.7"
 prefixmaps = "^0.2.4"
diff --git a/python/requirements.txt b/python/requirements.txt
index 643c882..d4e6438 100644
--- a/python/requirements.txt
+++ b/python/requirements.txt
@@ -6,4 +6,4 @@ click>=0.0
 cachier==1.1.8
 linkml
 linkml-runtime
-ontobio
\ No newline at end of file
+prefixmaps
\ No newline at end of file