diff --git a/.github/workflows/gen-project-linkml.yaml b/.github/workflows/gen-project-linkml.yaml
new file mode 100644
index 0000000..dfbdc7a
--- /dev/null
+++ b/.github/workflows/gen-project-linkml.yaml
@@ -0,0 +1,60 @@
+# Built from:
+# https://docs.github.com/en/actions/guides/building-and-testing-python
+# https://github.com/snok/install-poetry#workflows-and-tips
+
+name: Build and test LinkML output of GO domain/range constraints as JSON
+
+on: [pull_request]
+
+jobs:
+  test:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10"]
+
+    steps:
+
+      #----------------------------------------------
+      #       check-out repo and set-up python
+      #----------------------------------------------
+      - name: Check out repository
+        uses: actions/checkout@v2
+
+      - name: Set up Python ${{ "{{" }} matrix.python-version {{ "}}" }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ "{{" }} matrix.python-version {{ "}}" }}
+
+      #----------------------------------------------
+      #          install & configure poetry
+      #----------------------------------------------
+      - name: Install Poetry
+        uses: snok/install-poetry@v1.3
+
+      #----------------------------------------------
+      # install dependencies if cache does not exist
+      #----------------------------------------------
+      - name: Install dependencies
+        run: poetry install --no-interaction --no-root
+
+      #----------------------------------------------
+      #    install your root project, if required
+      #----------------------------------------------
+      - name: Install library
+        run: poetry install --no-interaction
+
+      #----------------------------------------------
+      # regerate LinkML artifacts
+      #----------------------------------------------
+      - name: Regenerate LinkML artifacts
+        run: |
+          make clean-artifacts
+          make -B gen-artifacts
+          if [ $? -eq 0 ]; then
+            echo "LinkML artifacts generated successfully"
+          else
+            echo "LinkML artifacts generation failed"
+            exit 1
+          fi
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index 08a3b02..edc3b2b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,6 +4,7 @@ python/tests/__pycache__/
 java/.idea/
 .DS_Store
 
+.venv/
 *.log
 scala/target/*
 scala/test/*
diff --git a/python/Makefile b/python/Makefile
index e4e1f3d..24b2fea 100644
--- a/python/Makefile
+++ b/python/Makefile
@@ -41,4 +41,19 @@ p-%: tests/data/p-%.ttl
 f-%: tests/data/f-%.ttl
 	python ./gocam_validator.py $< && exit -1 || echo FAILED AS EXPECTED
 
+gen-python:
+	rm -f shex_json_linkml.py && gen-python schema/shex_json_linkml.yaml > shex_json_linkml.py
+
+#gen-pydantic:
+#	rm -f shex_json_linkml.py && gen-pydantic schema/shex_json_linkml.yaml > shex_json_linkml.py
+
+gen-jsonschema:
+	rm -f target/jsonschema/shex_json_linkml.json && gen-json-schema schema/shex_json_linkml.yaml > target/jsonschema/shex_json_linkml.json
+
+gen-typescript:
+	rm -f target/typescript/shex_json_linkml.ts && gen-typescript schema/shex_json_linkml.yaml > target/typescript/shex_json_linkml.ts
+
+linkml: gen-python gen-jsonschema gen-typescript
+
+
 .PRECIOUS: tests/data/%.ttl
diff --git a/python/json_export.py b/python/json_export.py
new file mode 100644
index 0000000..c725562
--- /dev/null
+++ b/python/json_export.py
@@ -0,0 +1,167 @@
+from os import path
+import json
+from ontobio.rdfgen.assoc_rdfgen import prefix_context
+from prefixcommons.curie_util import contract_uri
+from pyshexc.parser_impl import generate_shexj
+from typing import Optional, List, Union
+from ShExJSG.ShExJ import Shape, ShapeAnd, ShapeOr, ShapeNot, TripleConstraint, shapeExpr, \
+    shapeExprLabel, tripleExpr, tripleExprLabel, OneOf, EachOf, Annotation
+from pyshex import PrefixLibrary
+import requests
+from shex_json_linkml import Association, AssociationCollection
+from linkml_runtime.dumpers import JSONDumper
+from linkml_runtime.loaders import JSONLoader
+from pathlib import Path
+import os
+
+OUT_JSON = os.path.join('../shapes/json/shex_dump.json')
+
+
+def get_suffix(uri):
+    suffix = contract_uri(uri, cmaps=[prefix_context])
+    if len(suffix) > 0:
+        return suffix[0]
+
+    return path.basename(uri)
+
+
+class NoctuaFormShex:
+    def __init__(self, shex_text):
+        self.exclude_ext_pred = 'http://purl.obolibrary.org/obo/go/shapes/exclude_from_extensions'
+        self.json_shapes = []
+
+        self.shex = generate_shexj.parse(shex_text)
+        pref = PrefixLibrary(shex_text)
+        self.pref_dict = {
+            k: get_suffix(str(v)) for (k, v) in dict(pref).items()
+            if str(v).startswith('http://purl.obolibrary.org/obo/')}
+        # remove this filter and make sure that it works because it needs to be
+        del self.pref_dict['OBO']
+        # working for every shape.
+
+    def get_shape_name(self, uri, clean=False):
+        name = path.basename(uri).upper()
+        if '/go/' in uri:
+            name = 'GO' + name
+        return self.pref_dict.get(name, None if clean else uri)
+
+    def gen_lookup_table(self):
+        goApi = 'http://api.geneontology.org/api/ontology/term/'
+        table = list()
+        for k, v in self.pref_dict.items():
+            resp = requests.get(goApi+v)
+            term = resp.json()
+            table.append({
+                'id': term['goid'],
+                'label': term['label'],
+                'definition': term.get('definition', ""),
+                'comment': term.get('comment', ""),
+                'synonyms': term.get('synonyms', "")
+            })
+        return table
+
+    def _load_expr(self, subject: str, expr: Optional[Union[shapeExprLabel, shapeExpr]], preds=None) -> List:
+
+        if preds is None:
+            preds = {}
+        if isinstance(expr, str) and isinstance(preds, list):
+            preds.append(self.get_shape_name(expr))
+        if isinstance(expr, (ShapeOr, ShapeAnd)):
+            for expr2 in expr.shapeExprs:
+                self._load_expr(subject, expr2, preds)
+        elif isinstance(expr, ShapeNot):
+            self._load_expr(subject, expr.shapeExpr, preds)
+        elif isinstance(expr, Shape) and expr.expression is not None:
+            self._load_triple_expr(subject, expr.expression, preds)
+
+        # throw an error here if pred list is empty
+        return preds
+
+    def _load_triple_expr(self, subject: str, expr: Union[tripleExpr, tripleExprLabel], preds=None) -> None:
+
+        if isinstance(expr, (OneOf, EachOf)):
+            for expr2 in expr.expressions:
+                self._load_triple_expr(subject, expr2, preds)
+        elif isinstance(expr, TripleConstraint) and expr.valueExpr is not None:
+            predicate = get_suffix(expr.predicate)
+
+            if predicate not in self.pref_dict.values():
+                return preds
+
+            objects = []
+            self._load_expr(subject, expr.valueExpr, objects)
+
+            exclude_from_extensions = ""
+            if isinstance(expr.annotations, list):
+                exclude_from_extensions = self._load_annotation(
+                    expr, self.exclude_ext_pred)
+
+            is_multivalued = False
+            if expr.max is not None and expr.max == -1:
+                is_multivalued = True
+
+            goshape = Association(
+                subject=subject,
+                object=objects,
+                predicate=predicate,
+                is_multivalued=is_multivalued,
+                is_required=False,
+                context=""
+            )
+            if exclude_from_extensions != "":
+                goshape.exclude_from_extensions = exclude_from_extensions,
+            self.json_shapes.append(goshape)
+
+            return preds
+
+    def _load_annotation(self, expr: Union[tripleExpr, tripleExprLabel], annotation_key):
+        for annotation in expr.annotations:
+            if isinstance(annotation, Annotation) and annotation.predicate == annotation_key:
+                return True if annotation.object.value == "true" else False
+
+        return False
+
+    def parse_raw(self):
+        return json.loads(self.shex._as_json_dumps())
+
+    def parse(self):
+        shapes = self.shex.shapes
+
+        for shape in shapes:
+            shape_name = self.get_shape_name(shape['id'], True)
+
+            if shape_name is None:
+                continue
+
+            print('Parsing Shape: ' + shape['id'])
+
+            shexps = shape.shapeExprs or []
+
+            for expr in shexps:
+                self._load_expr(shape_name, expr)
+
+
+if __name__ == "__main__":
+
+    base_path = Path(__file__).parent
+    shex_fp = (base_path / "../shapes/go-cam-shapes.shex").resolve()
+    json_shapes_fp = (base_path / "../shapes/json/shex_dump.json").resolve()
+    look_table_fp = (base_path / "../shapes/json/look_table.json").resolve()
+    shex_full_fp = (base_path / "../shapes/json/shex_full.json").resolve()
+
+    with open(shex_fp) as f:
+        shex_text = f.read()
+
+    nfShex = NoctuaFormShex(shex_text)
+    nfShex.parse()
+
+    with open(json_shapes_fp, "w") as sf:
+        jd = JSONDumper()
+        coll = AssociationCollection(goshapes=nfShex.json_shapes)
+        jd.dump(coll, to_file=OUT_JSON)
+
+    """ with open(look_table_fp, "w") as sf:
+        json.dump(nfShex.gen_lookup_table(), sf, indent=2) """
+
+    with open(shex_full_fp, "w") as sf:
+        json.dump(nfShex.parse_raw(), sf, indent=2)
diff --git a/python/poetry.lock b/python/poetry.lock
new file mode 100644
index 0000000..2d1926d
--- /dev/null
+++ b/python/poetry.lock
@@ -0,0 +1,2245 @@
+[[package]]
+name = "antlr4-python3-runtime"
+version = "4.9.3"
+description = "ANTLR 4.9.3 runtime for Python 3.7"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "attrs"
+version = "22.1.0"
+description = "Classes Without Boilerplate"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"]
+docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
+tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
+tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
+
+[[package]]
+name = "bidict"
+version = "0.22.0"
+description = "The bidirectional mapping library for Python."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "bleach"
+version = "5.0.1"
+description = "An easy safelist-based HTML-sanitizing tool."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+six = ">=1.9.0"
+webencodings = "*"
+
+[package.extras]
+css = ["tinycss2 (>=1.1.0,<1.2)"]
+dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"]
+
+[[package]]
+name = "cachier"
+version = "1.5.4"
+description = "Persistent, stale-free, local and cross-machine caching for Python functions."
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+pathtools = "*"
+portalocker = "*"
+watchdog = "*"
+
+[package.extras]
+test = ["birch", "collective.checkdocs", "coverage", "dnspython", "pandas", "pygments", "pymongo", "pytest", "pytest-cov"]
+
+[[package]]
+name = "certifi"
+version = "2022.9.24"
+description = "Python package for providing Mozilla's CA Bundle."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "cffi"
+version = "1.15.1"
+description = "Foreign Function Interface for Python calling C code."
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+pycparser = "*"
+
+[[package]]
+name = "cfgraph"
+version = "0.2.1"
+description = "rdflib collections flattening graph"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+rdflib = ">=0.4.2"
+
+[[package]]
+name = "chardet"
+version = "5.0.0"
+description = "Universal encoding detector for Python 3"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "charset-normalizer"
+version = "2.1.1"
+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+category = "main"
+optional = false
+python-versions = ">=3.6.0"
+
+[package.extras]
+unicode-backport = ["unicodedata2"]
+
+[[package]]
+name = "click"
+version = "8.1.3"
+description = "Composable command line interface toolkit"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+colorama = {version = "*", markers = "platform_system == \"Windows\""}
+
+[[package]]
+name = "colorama"
+version = "0.4.6"
+description = "Cross-platform colored terminal text."
+category = "main"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+
+[[package]]
+name = "commonmark"
+version = "0.9.1"
+description = "Python parser for the CommonMark Markdown spec"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.extras]
+test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
+
+[[package]]
+name = "contourpy"
+version = "1.0.6"
+description = "Python library for calculating contours of 2D quadrilateral grids"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+numpy = ">=1.16"
+
+[package.extras]
+bokeh = ["bokeh", "selenium"]
+docs = ["docutils (<0.18)", "sphinx (<=5.2.0)", "sphinx-rtd-theme"]
+test = ["Pillow", "flake8", "isort", "matplotlib", "pytest"]
+test-minimal = ["pytest"]
+test-no-codebase = ["Pillow", "matplotlib", "pytest"]
+
+[[package]]
+name = "cryptography"
+version = "38.0.3"
+description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+cffi = ">=1.12"
+
+[package.extras]
+docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"]
+docstest = ["pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"]
+pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"]
+sdist = ["setuptools-rust (>=0.11.4)"]
+ssh = ["bcrypt (>=3.1.5)"]
+test = ["hypothesis (>=1.11.4,!=3.79.2)", "iso8601", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-subtests", "pytest-xdist", "pytz"]
+
+[[package]]
+name = "cycler"
+version = "0.11.0"
+description = "Composable style cycles"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "dacite"
+version = "1.6.0"
+description = "Simple creation of data classes from dictionaries."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.extras]
+dev = ["black", "coveralls", "mypy", "pylint", "pytest (>=5)", "pytest-cov"]
+
+[[package]]
+name = "dataclasses"
+version = "0.6"
+description = "A backport of the dataclasses module for Python 3.6"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "decorator"
+version = "5.1.1"
+description = "Decorators for Humans"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[[package]]
+name = "deprecated"
+version = "1.2.13"
+description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+
+[package.dependencies]
+wrapt = ">=1.10,<2"
+
+[package.extras]
+dev = ["PyTest", "PyTest (<5)", "PyTest-Cov", "PyTest-Cov (<2.6)", "bump2version (<1)", "configparser (<5)", "importlib-metadata (<3)", "importlib-resources (<4)", "sphinx (<2)", "sphinxcontrib-websupport (<2)", "tox", "zipp (<2)"]
+
+[[package]]
+name = "diskcache"
+version = "5.4.0"
+description = "Disk Cache -- Disk and file backed persistent cache."
+category = "main"
+optional = false
+python-versions = ">=3"
+
+[[package]]
+name = "docutils"
+version = "0.19"
+description = "Docutils -- Python Documentation Utilities"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "exceptiongroup"
+version = "1.0.4"
+description = "Backport of PEP 654 (exception groups)"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+test = ["pytest (>=6)"]
+
+[[package]]
+name = "fonttools"
+version = "4.38.0"
+description = "Tools to manipulate font files"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"]
+graphite = ["lz4 (>=1.7.4.2)"]
+interpolatable = ["munkres", "scipy"]
+lxml = ["lxml (>=4.0,<5)"]
+pathops = ["skia-pathops (>=0.5.0)"]
+plot = ["matplotlib"]
+repacker = ["uharfbuzz (>=0.23.0)"]
+symfont = ["sympy"]
+type1 = ["xattr"]
+ufo = ["fs (>=2.2.0,<3)"]
+unicode = ["unicodedata2 (>=14.0.0)"]
+woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
+
+[[package]]
+name = "hbreader"
+version = "0.9.1"
+description = "Honey Badger reader - a generic file/url/string open and read tool"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "idna"
+version = "3.4"
+description = "Internationalized Domain Names in Applications (IDNA)"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[[package]]
+name = "importlib-metadata"
+version = "5.0.0"
+description = "Read metadata from Python packages"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+zipp = ">=0.5"
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
+perf = ["ipython"]
+testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+
+[[package]]
+name = "iniconfig"
+version = "1.1.1"
+description = "iniconfig: brain-dead simple config-ini parsing"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "isodate"
+version = "0.6.1"
+description = "An ISO 8601 date/time/duration parser and formatter"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+six = "*"
+
+[[package]]
+name = "jaraco-classes"
+version = "3.2.3"
+description = "Utility functions for Python class constructs"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+more-itertools = "*"
+
+[package.extras]
+docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
+testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+
+[[package]]
+name = "jeepney"
+version = "0.8.0"
+description = "Low-level, pure Python DBus protocol wrapper."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+test = ["async-timeout", "pytest", "pytest-asyncio (>=0.17)", "pytest-trio", "testpath", "trio"]
+trio = ["async_generator", "trio"]
+
+[[package]]
+name = "jsobject"
+version = "0.10.2"
+description = "Jsobject is simple implementation JavaScript-Style Objects                  in Python."
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "json-flattener"
+version = "0.1.9"
+description = "Python library for denormalizing nested dicts or json objects to tables and back"
+category = "main"
+optional = false
+python-versions = ">=3.7.0"
+
+[package.dependencies]
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diff --git a/python/poetry.toml b/python/poetry.toml
new file mode 100644
index 0000000..ab1033b
--- /dev/null
+++ b/python/poetry.toml
@@ -0,0 +1,2 @@
+[virtualenvs]
+in-project = true
diff --git a/python/pyproject.toml b/python/pyproject.toml
new file mode 100644
index 0000000..9222f05
--- /dev/null
+++ b/python/pyproject.toml
@@ -0,0 +1,22 @@
+[tool.poetry]
+name = "go-shapes"
+version = "0.1.0"
+description = ""
+authors = []
+
+[tool.poetry.dependencies]
+python = "^3.9"
+PyShEx = "^0.8.1"
+rdflib = "^6.2.0"
+SPARQLWrapper = "^2.0.0"
+click = "^8.1.3"
+cachier = "^1.5.4"
+ontobio = "^2.8.3"
+pydantic = "^1.10.2"
+linkml-runtime = "^1.3.7"
+
+[tool.poetry.dev-dependencies]
+
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"
diff --git a/python/requirements.txt b/python/requirements.txt
index b6fbe05..15ef926 100644
--- a/python/requirements.txt
+++ b/python/requirements.txt
@@ -4,4 +4,5 @@ rdflib>=0.0
 SPARQLWrapper>=0.0
 click>=0.0
 cachier==1.1.8
-dataclasses>=0.0
+linkml
+linkml-runtime
diff --git a/python/schema/shex_json_linkml.yaml b/python/schema/shex_json_linkml.yaml
new file mode 100644
index 0000000..0858375
--- /dev/null
+++ b/python/schema/shex_json_linkml.yaml
@@ -0,0 +1,106 @@
+id: go-shex-domain-range-constraints
+name: GODomainRangeConstraintsModel
+description: a schema for the domain and range exchange format for the GO shape expressions
+license: https://creativecommons.org/publicdomain/zero/1.0/
+version: 0.1.0
+
+default_prefix: GO
+default_range: string
+
+imports:
+  - linkml:types
+
+default_curi_maps:
+  - obo_context
+  - idot_context
+  - monarch_context
+  - semweb_context
+
+prefixes:
+  biolink: https://w3id.org/biolink/vocab/
+  linkml: https://w3id.org/linkml/
+
+classes:
+  Association:
+    description: >-
+      GO domain/range constraint shape is defined as the domain, relationship, and range of a GO shape 
+      expression rule
+    slots:
+      - subject
+      - predicate
+      - object
+      - is_multivalued
+      - is_required
+      - context
+      - exclude_from_extensions # where does this belong?
+    close_mappings:
+     - schema:Thing
+
+  AssociationCollection:
+    tree_root: true
+    slots:
+      - goshapes
+    description: >-
+      A collection of GO domain/range constraint shapes.  This is primarily used in this schema to allow several 
+      test data objects to be submitted in a single file. 
+
+slots:
+
+  object:
+    multivalued: true
+    range: uriorcurie
+    required: true
+    description: >-
+      The range of the relationship identified by the Relationship.id parameter
+      (This contains the values can be provided in the object of a statement)
+
+  id:
+    range: string
+    description: >-
+      The relationship id is the predicate of the relationship between the domain and 
+      range of the GO shape expression rule.
+
+  predicate:
+    range: string
+    description: >-
+      The predicate is the relationship between the domain and 
+      range of the GO shape expression rule.
+
+  subject:
+    range: uriorcurie
+    required: true
+    description: >-
+      The domain of the GO shape expression rule, this is the subject of the relationship.
+
+  is_multivalued:
+    range: boolean
+    required: true
+    description: >-
+      for this shape, the relationship in question supports multiple values in the object of the association.
+
+  goshapes:
+    multivalued: true
+    range: Association
+    inlined: true
+    inlined_as_list: true
+    description: >-
+      A collectionm of GO domain/range constraint shapes where a GO domain/range constraint shape 
+      is defined as the domain, relationship, and range of a GO shape expression rule.
+
+  is_required:
+    range: boolean
+    required: true
+
+  context:
+    range: string
+    description: >-
+      used to determine if this shape is used in the the visual pathway editor or the graphical editor.  Those shapes
+      annotated with like this https://github.com/geneontology/go-shapes/pull/285/files will be exlcuded from the
+      visual pathway editor but still included in the file so this file can be used in the graphical editor as well.
+    required: true
+
+  exclude_from_extensions:
+    range: boolean
+    description: >-
+      used to determine if this shape is used in the the visual pathway editor or the graphical editor.  Those shapes
+      annotated with like this
diff --git a/python/shex_json_linkml.py b/python/shex_json_linkml.py
new file mode 100644
index 0000000..e740c57
--- /dev/null
+++ b/python/shex_json_linkml.py
@@ -0,0 +1,159 @@
+# Auto generated from shex_json_linkml.yaml by pythongen.py version: 0.9.0
+# Generation date: 2022-11-18T12:44:53
+# Schema: GODomainRangeConstraintsModel
+#
+# id: go-shex-domain-range-constraints
+# description: a schema for the domain and range exchange format for the GO shape expressions
+# license: https://creativecommons.org/publicdomain/zero/1.0/
+
+import dataclasses
+import sys
+import re
+from jsonasobj2 import JsonObj, as_dict
+from typing import Optional, List, Union, Dict, ClassVar, Any
+from dataclasses import dataclass
+from linkml_runtime.linkml_model.meta import EnumDefinition, PermissibleValue, PvFormulaOptions
+
+from linkml_runtime.utils.slot import Slot
+from linkml_runtime.utils.metamodelcore import empty_list, empty_dict, bnode
+from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str, extended_float, extended_int
+from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
+from linkml_runtime.utils.formatutils import camelcase, underscore, sfx
+from linkml_runtime.utils.enumerations import EnumDefinitionImpl
+from rdflib import Namespace, URIRef
+from linkml_runtime.utils.curienamespace import CurieNamespace
+from linkml_runtime.linkml_model.types import Boolean, String, Uriorcurie
+from linkml_runtime.utils.metamodelcore import Bool, URIorCURIE
+
+metamodel_version = "1.7.0"
+version = "0.1.0"
+
+# Overwrite dataclasses _init_fn to add **kwargs in __init__
+dataclasses._init_fn = dataclasses_init_fn_with_kwargs
+
+# Namespaces
+GO = CurieNamespace('GO', 'http://purl.obolibrary.org/obo/GO_')
+BIOLINK = CurieNamespace('biolink', 'https://w3id.org/biolink/vocab/')
+LINKML = CurieNamespace('linkml', 'https://w3id.org/linkml/')
+SCHEMA = CurieNamespace('schema', 'http://example.org/UNKNOWN/schema/')
+DEFAULT_ = GO
+
+
+# Types
+
+# Class references
+
+
+
+@dataclass
+class Association(YAMLRoot):
+    """
+    GO domain/range constraint shape is defined as the domain, relationship, and range of a GO shape  expression rule
+    """
+    _inherited_slots: ClassVar[List[str]] = []
+
+    class_class_uri: ClassVar[URIRef] = GO.Association
+    class_class_curie: ClassVar[str] = "GO:Association"
+    class_name: ClassVar[str] = "Association"
+    class_model_uri: ClassVar[URIRef] = GO.Association
+
+    subject: Union[str, URIorCURIE] = None
+    object: Union[Union[str, URIorCURIE], List[Union[str, URIorCURIE]]] = None
+    is_multivalued: Union[bool, Bool] = None
+    is_required: Union[bool, Bool] = None
+    context: str = None
+    predicate: Optional[str] = None
+    exclude_from_extensions: Optional[Union[bool, Bool]] = None
+
+    def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
+        if self._is_empty(self.subject):
+            self.MissingRequiredField("subject")
+        if not isinstance(self.subject, URIorCURIE):
+            self.subject = URIorCURIE(self.subject)
+
+        if self._is_empty(self.object):
+            self.MissingRequiredField("object")
+        if not isinstance(self.object, list):
+            self.object = [self.object] if self.object is not None else []
+        self.object = [v if isinstance(v, URIorCURIE) else URIorCURIE(v) for v in self.object]
+
+        if self._is_empty(self.is_multivalued):
+            self.MissingRequiredField("is_multivalued")
+        if not isinstance(self.is_multivalued, Bool):
+            self.is_multivalued = Bool(self.is_multivalued)
+
+        if self._is_empty(self.is_required):
+            self.MissingRequiredField("is_required")
+        if not isinstance(self.is_required, Bool):
+            self.is_required = Bool(self.is_required)
+
+        if self._is_empty(self.context):
+            self.MissingRequiredField("context")
+        if not isinstance(self.context, str):
+            self.context = str(self.context)
+
+        if self.predicate is not None and not isinstance(self.predicate, str):
+            self.predicate = str(self.predicate)
+
+        if self.exclude_from_extensions is not None and not isinstance(self.exclude_from_extensions, Bool):
+            self.exclude_from_extensions = Bool(self.exclude_from_extensions)
+
+        super().__post_init__(**kwargs)
+
+
+@dataclass
+class AssociationCollection(YAMLRoot):
+    """
+    A collection of GO domain/range constraint shapes. This is primarily used in this schema to allow several test
+    data objects to be submitted in a single file.
+    """
+    _inherited_slots: ClassVar[List[str]] = []
+
+    class_class_uri: ClassVar[URIRef] = GO.AssociationCollection
+    class_class_curie: ClassVar[str] = "GO:AssociationCollection"
+    class_name: ClassVar[str] = "AssociationCollection"
+    class_model_uri: ClassVar[URIRef] = GO.AssociationCollection
+
+    goshapes: Optional[Union[Union[dict, Association], List[Union[dict, Association]]]] = empty_list()
+
+    def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
+        if not isinstance(self.goshapes, list):
+            self.goshapes = [self.goshapes] if self.goshapes is not None else []
+        self.goshapes = [v if isinstance(v, Association) else Association(**as_dict(v)) for v in self.goshapes]
+
+        super().__post_init__(**kwargs)
+
+
+# Enumerations
+
+
+# Slots
+class slots:
+    pass
+
+slots.object = Slot(uri=GO.object, name="object", curie=GO.curie('object'),
+                   model_uri=GO.object, domain=None, range=Union[Union[str, URIorCURIE], List[Union[str, URIorCURIE]]])
+
+slots.id = Slot(uri=GO.id, name="id", curie=GO.curie('id'),
+                   model_uri=GO.id, domain=None, range=Optional[str])
+
+slots.predicate = Slot(uri=GO.predicate, name="predicate", curie=GO.curie('predicate'),
+                   model_uri=GO.predicate, domain=None, range=Optional[str])
+
+slots.subject = Slot(uri=GO.subject, name="subject", curie=GO.curie('subject'),
+                   model_uri=GO.subject, domain=None, range=Union[str, URIorCURIE])
+
+slots.is_multivalued = Slot(uri=GO.is_multivalued, name="is_multivalued", curie=GO.curie('is_multivalued'),
+                   model_uri=GO.is_multivalued, domain=None, range=Union[bool, Bool])
+
+slots.goshapes = Slot(uri=GO.goshapes, name="goshapes", curie=GO.curie('goshapes'),
+                   model_uri=GO.goshapes, domain=None, range=Optional[Union[Union[dict, Association], List[Union[dict, Association]]]])
+
+slots.is_required = Slot(uri=GO.is_required, name="is_required", curie=GO.curie('is_required'),
+                   model_uri=GO.is_required, domain=None, range=Union[bool, Bool])
+
+slots.context = Slot(uri=GO.context, name="context", curie=GO.curie('context'),
+                   model_uri=GO.context, domain=None, range=str)
+
+slots.exclude_from_extensions = Slot(uri=GO.exclude_from_extensions, name="exclude_from_extensions", curie=GO.curie('exclude_from_extensions'),
+                   model_uri=GO.exclude_from_extensions, domain=None, range=Optional[Union[bool, Bool]])
diff --git a/python/shex_to_json_playground.ipynb b/python/shex_to_json_playground.ipynb
new file mode 100644
index 0000000..9c52124
--- /dev/null
+++ b/python/shex_to_json_playground.ipynb
@@ -0,0 +1,218 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "56a76033-737c-48d2-96cb-ffd5ec602e44",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from os import path\n",
+    "import json\n",
+    "import requests\n",
+    "from typing import List\n",
+    "from ontobio.rdfgen.assoc_rdfgen import prefix_context\n",
+    "from prefixcommons.curie_util import contract_uri\n",
+    "from pyshexc.parser_impl import generate_shexj\n",
+    "from typing import Optional, List, Union\n",
+    "from ShExJSG.ShExJ import Shape, ShapeAnd, ShapeOr, ShapeNot, TripleConstraint, shapeExprLabel, shapeExpr, shapeExprLabel, tripleExpr, tripleExprLabel, OneOf, EachOf\n",
+    "from pyshex import PrefixLibrary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "673f964a-0055-4543-b0d0-5b2e605ddb5e",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "shex_url = \"https://raw.githubusercontent.com/geneontology/go-shapes/master/shapes/go-cam-shapes.shex\"\n",
+    "shex_response = requests.get(shex_url)\n",
+    "shex = generate_shexj.parse(shex_response.text)\n",
+    "pref = PrefixLibrary(shex_response.text)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "459c51e3-9625-4220-8080-8eb28b225a51",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def get_suffix(uri):\n",
+    "    suffix = contract_uri(uri, cmaps=[prefix_context])\n",
+    "    if len(suffix) > 0:\n",
+    "        return suffix[0]\n",
+    "\n",
+    "    return path.basename(uri)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "1fcc3240-0722-4235-91b4-7ba6356796a0",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pref_dict = {k:get_suffix(str(v)) for (k,v) in dict(pref).items() if str(v).startswith('http://purl.obolibrary.org/obo/')}\n",
+    "del pref_dict['OBO']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4f016014-8d91-45ae-affe-a8578d87e2e3",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def lookup_table():\n",
+    "    table = {v:\n",
+    "             {\n",
+    "                'label':k\n",
+    "             } \n",
+    "             for (k,v) in pref_dict.items()}\n",
+    "    return table"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7febf197-6679-493c-bb0e-fb7872a5d333",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def get_shape_name(uri, clean=False):\n",
+    "    name = path.basename(uri).upper() \n",
+    "    if '/go/' in uri:\n",
+    "        name = 'GO'+name\n",
+    "    return pref_dict.get(name, None if clean else uri )\n",
+    "    "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "e25a7994-3ffe-4ea0-af5c-b6f424e8d8a4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def load_expr(expr: Optional[Union[shapeExprLabel, shapeExpr]], preds=None) -> []:\n",
+    "   \n",
+    "    if(preds == None):\n",
+    "        preds = {}\n",
+    "    if isinstance(expr, str) and isinstance(preds, list):\n",
+    "        preds.append(get_shape_name(expr))\n",
+    "    if isinstance(expr, (ShapeOr, ShapeAnd)):\n",
+    "        for expr2 in expr.shapeExprs:\n",
+    "            load_expr(expr2, preds)\n",
+    "    elif isinstance(expr, ShapeNot):\n",
+    "        load_expr(expr.shapeExpr, preds)\n",
+    "    elif isinstance(expr, Shape):\n",
+    "        if expr.expression is not None:\n",
+    "            load_triple(expr.expression, preds)\n",
+    "    \n",
+    "    return preds\n",
+    "            \n",
+    "def load_triple( expr: Union[tripleExpr, tripleExprLabel], preds=None) -> None:\n",
+    "    \n",
+    "        if isinstance(expr, (OneOf, EachOf)):\n",
+    "            for expr2 in expr.expressions:\n",
+    "                load_triple(expr2, preds)\n",
+    "        elif isinstance(expr, TripleConstraint):\n",
+    "            if expr.valueExpr is not None:\n",
+    "                pred = get_suffix(expr.predicate)\n",
+    "                \n",
+    "                if pred not in pref_dict.values():\n",
+    "                    return\n",
+    "                \n",
+    "                preds[pred] = {}\n",
+    "                preds[pred]['targets'] = []\n",
+    "                \n",
+    "                if expr.max != None:\n",
+    "                    preds[pred]['cardinality'] = expr.max                    \n",
+    "                \n",
+    "                load_expr(expr.valueExpr, preds[pred]['targets'])"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "b43165da-0a45-4a92-894d-0d02e30a3440",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "shapes_res = {}\n",
+    "shapes = shex.shapes\n",
+    "\n",
+    "for shape in shapes:\n",
+    "    shape_name = get_shape_name(shape['id'], True)\n",
+    "    \n",
+    "    if shape_name == None:\n",
+    "        continue\n",
+    "    \n",
+    "    shapes_res[shape_name] = {}\n",
+    "\n",
+    "    shexps = shape.shapeExprs or []       \n",
+    "\n",
+    "    for expr in shexps:\n",
+    "        shapes_res[shape_name] = load_expr(expr)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "29ed3690-a3cc-470c-b6f9-c1792c88a159",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "with open(\"shex_dump.json\", \"w\") as sf:\n",
+    "    json.dump(shapes_res, sf, indent=2)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "117001fd-c42c-4957-9c19-5a59236e92db",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "with open(\"look_table.json\", \"w\") as sf:\n",
+    "    json.dump(lookup_table(), sf, indent=2)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "a85fb0d8-cfc2-41f6-9954-92b46cd5bf68",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.7.9"
+  },
+  "vscode": {
+   "interpreter": {
+    "hash": "88953039a69fbc3cee158df0a3647530aed876ec4de7d6bab7db32384164d671"
+   }
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/python/target/jsonschema/shex_json_linkml.json b/python/target/jsonschema/shex_json_linkml.json
new file mode 100644
index 0000000..1d02317
--- /dev/null
+++ b/python/target/jsonschema/shex_json_linkml.json
@@ -0,0 +1,83 @@
+{
+   "$defs": {
+      "Association": {
+         "additionalProperties": false,
+         "description": "GO domain/range constraint shape is defined as the domain, relationship, and range of a GO shape  expression rule",
+         "properties": {
+            "context": {
+               "description": "used to determine if this shape is used in the the visual pathway editor or the graphical editor.  Those shapes annotated with like this https://github.com/geneontology/go-shapes/pull/285/files will be exlcuded from the visual pathway editor but still included in the file so this file can be used in the graphical editor as well.",
+               "type": "string"
+            },
+            "exclude_from_extensions": {
+               "description": "used to determine if this shape is used in the the visual pathway editor or the graphical editor.  Those shapes annotated with like this",
+               "type": "boolean"
+            },
+            "is_multivalued": {
+               "description": "for this shape, the relationship in question supports multiple values in the object of the association.",
+               "type": "boolean"
+            },
+            "is_required": {
+               "type": "boolean"
+            },
+            "object": {
+               "description": "The range of the relationship identified by the Relationship.id parameter (This contains the values can be provided in the object of a statement)",
+               "items": {
+                  "type": "string"
+               },
+               "type": "array"
+            },
+            "predicate": {
+               "description": "The predicate is the relationship between the domain and  range of the GO shape expression rule.",
+               "type": "string"
+            },
+            "subject": {
+               "description": "The domain of the GO shape expression rule, this is the subject of the relationship.",
+               "type": "string"
+            }
+         },
+         "required": [
+            "subject",
+            "object",
+            "is_multivalued",
+            "is_required",
+            "context"
+         ],
+         "title": "Association",
+         "type": "object"
+      },
+      "Collection": {
+         "additionalProperties": false,
+         "description": "A collection of GO domain/range constraint shapes.  This is primarily used in this schema to allow several  test data objects to be submitted in a single file.",
+         "properties": {
+            "goshapes": {
+               "description": "A collectionm of GO domain/range constraint shapes where a GO domain/range constraint shape  is defined as the domain, relationship, and range of a GO shape expression rule.",
+               "items": {
+                  "$ref": "#/$defs/Association"
+               },
+               "type": "array"
+            }
+         },
+         "required": [],
+         "title": "Collection",
+         "type": "object"
+      }
+   },
+   "$id": "go-shex-domain-range-constraints",
+   "$schema": "http://json-schema.org/draft-07/schema#",
+   "additionalProperties": true,
+   "metamodel_version": "1.7.0",
+   "properties": {
+      "goshapes": {
+         "description": "A collectionm of GO domain/range constraint shapes where a GO domain/range constraint shape  is defined as the domain, relationship, and range of a GO shape expression rule.",
+         "items": {
+            "$ref": "#/$defs/Association"
+         },
+         "type": "array"
+      }
+   },
+   "required": [],
+   "title": "GODomainRangeConstraintsModel",
+   "type": "object",
+   "version": "0.1.0"
+}
+
diff --git a/python/target/typescript/shex_json_linkml.ts b/python/target/typescript/shex_json_linkml.ts
new file mode 100644
index 0000000..2860b65
--- /dev/null
+++ b/python/target/typescript/shex_json_linkml.ts
@@ -0,0 +1,70 @@
+
+
+
+
+
+/**
+ * GO domain/range constraint shape is defined as the domain, relationship, and range of a GO shape  expression rule
+ */
+
+export interface Association  {
+    
+    
+    /**
+     * The domain of the GO shape expression rule, this is the subject of the relationship.
+     */
+    subject?: string,
+    
+    
+    /**
+     * The predicate is the relationship between the domain and  range of the GO shape expression rule.
+     */
+    predicate?: string,
+    
+    
+    /**
+     * The range of the relationship identified by the Relationship.id parameter (This contains the values can be provided in the object of a statement)
+     */
+    object?: string,
+    
+    
+    /**
+     * for this shape, the relationship in question supports multiple values in the object of the association.
+     */
+    is_multivalued?: boolean,
+    
+    
+    /**
+     * None
+     */
+    is_required?: boolean,
+    
+    
+    /**
+     * used to determine if this shape is used in the the visual pathway editor or the graphical editor.  Those shapes annotated with like this https://github.com/geneontology/go-shapes/pull/285/files will be exlcuded from the visual pathway editor but still included in the file so this file can be used in the graphical editor as well.
+     */
+    context?: string,
+    
+    
+    /**
+     * used to determine if this shape is used in the the visual pathway editor or the graphical editor.  Those shapes annotated with like this
+     */
+    exclude_from_extensions?: boolean,
+    
+}
+
+
+/**
+ * A collection of GO domain/range constraint shapes.  This is primarily used in this schema to allow several  test data objects to be submitted in a single file. 
+ */
+
+export interface Collection  {
+    
+    
+    /**
+     * A collectionm of GO domain/range constraint shapes where a GO domain/range constraint shape  is defined as the domain, relationship, and range of a GO shape expression rule.
+     */
+    goshapes?: Association[],
+    
+}
+
diff --git a/python/tests/data/flatten_shex_test_data.json b/python/tests/data/flatten_shex_test_data.json
new file mode 100644
index 0000000..589b1dc
--- /dev/null
+++ b/python/tests/data/flatten_shex_test_data.json
@@ -0,0 +1,35 @@
+{
+  "goshapes": [
+    {
+      "domain_name": "GO:0008150",
+      "relationship": "BFO:0000050",
+      "is_multivalued": false,
+      "exclude_from_extensions": "part_of",
+      "range": ["GO:0008150"],
+      "context": "",
+      "is_required": true
+    },
+    {
+      "domain_name": "GO:0008150",
+      "relationship": "RO:0002233",
+      "is_multivalued": true,
+      "range": [
+        "CHEBI:24431",
+        "CARO:0000000",
+        "GO:0032991",
+        "NCBITaxon:1"
+      ],
+      "context": "",
+      "exclude_from_extensions": "occurs_in",
+      "is_required": true
+    },
+    {
+      "domain_name": "GO:0048856",
+      "relationship": "RO:0002296",
+      "is_multivalued": false,
+      "range": ["CARO:00000000"],
+      "exclude_from_extensions": "occurs_in",
+      "is_required": true
+    }
+  ]
+}
\ No newline at end of file
diff --git a/python/tests/test_json_export.py b/python/tests/test_json_export.py
new file mode 100644
index 0000000..2f98f09
--- /dev/null
+++ b/python/tests/test_json_export.py
@@ -0,0 +1,44 @@
+from linkml_runtime.utils.schemaview import SchemaView
+from linkml_runtime.linkml_model.meta import (
+    SchemaDefinition
+)
+from python import json_export
+from pprint import pprint
+from linkml.generators.jsonschemagen import JsonSchemaGenerator
+from linkml.generators.pydanticgen import PydanticGenerator
+from json_export import NoctuaFormShex
+from pathlib import Path
+
+base_path = Path(__file__).parent
+
+SHEX_JSON_LINKML_PATH = (
+    "../schema/shex_json_linkml.yaml"
+)
+
+
+def test_valid_schema():
+    sv = SchemaView(SHEX_JSON_LINKML_PATH)
+    schemadef = sv.schema
+    assert isinstance(schemadef, SchemaDefinition)
+    assert sv.all_classes()
+    print(sv.all_classes())
+
+    json_gen = JsonSchemaGenerator(schema=schemadef)
+    python_gen = PydanticGenerator(schema=schemadef)
+    print(json_gen.serialize())
+
+    base_path = Path(__file__).parent
+    jsonschema = (base_path / "../target/jsonschema/shex_json_linkml.json").resolve()
+
+    json_format = open(jsonschema, 'w')
+    json_format.write(json_gen.serialize())
+    pyfile = open('../shex_json_linkml.py', 'w')
+    pyfile.write(python_gen.serialize())
+
+
+def test_json_parser():
+    nfs = json_export.NoctuaFormShex()
+    nfs.parse()
+    pprint(nfs.json_shapes)
+
+    # pprint(nfs.json_shapes)
diff --git a/shapes/go-cam-shapes.shex b/shapes/go-cam-shapes.shex
index 9bc3ad7..35ed12b 100644
--- a/shapes/go-cam-shapes.shex
+++ b/shapes/go-cam-shapes.shex
@@ -1,581 +1,581 @@
-BASE   <http://purl.obolibrary.org/obo/go/shapes/>
-PREFIX obo: <http://purl.obolibrary.org/obo/>
-PREFIX rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
-PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
-PREFIX owl: <http://www.w3.org/2002/07/owl#>
-PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
-PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
-PREFIX prov: <http://www.w3.org/ns/prov#>
-#metadata
-PREFIX bl: <https://w3id.org/biolink/vocab/>
-PREFIX contributor: <http://purl.org/dc/elements/1.1/contributor>
-PREFIX provided_by: <http://purl.org/pav/providedBy>
-PREFIX modification_date: <http://purl.org/dc/elements/1.1/date>
-PREFIX creation_date: <http://purl.org/dc/terms/created>
-PREFIX import_date: <http://purl.org/dc/terms/dateAccepted>
-PREFIX xref: <http://www.geneontology.org/formats/oboInOwl#hasDbXref>
-PREFIX exact_match: <http://www.w3.org/2004/02/skos/core#exactMatch>
-PREFIX source: <http://purl.org/dc/elements/1.1/source>
-PREFIX evidence: <http://geneontology.org/lego/evidence>
-PREFIX with: <http://geneontology.org/lego/evidence-with>
-PREFIX x: <http://geneontology.org/lego/hint/layout/x>
-PREFIX y: <http://geneontology.org/lego/hint/layout/y>
-#model level annotations
-PREFIX ontology: <http://www.w3.org/2002/07/owl#Ontology>
-PREFIX taxon: <https://w3id.org/biolink/vocab/in_taxon>
-PREFIX modelstate: <http://geneontology.org/lego/modelstate>
-PREFIX templatestate: <http://geneontology.org/lego/templatestate>
-PREFIX oboinowlid: <http://www.geneontology.org/formats/oboInOwl#id>
-###contributor, date, providedBy reused
-PREFIX title: <http://purl.org/dc/elements/1.1/title>
-PREFIX imports: <http://www.w3.org/2002/07/owl#imports>
-# always limit imports to? <http://purl.obolibrary.org/obo/go/extensions/go-lego.owl> ;
-PREFIX in_taxon: <https://w3id.org/biolink/vocab/in_taxon>
-#semantic: classes
-PREFIX GoInformationBiomacromolecule: <http://purl.obolibrary.org/obo/CHEBI_33695>
-PREFIX GoProtein: <http://purl.obolibrary.org/obo/CHEBI_36080>
-PREFIX GoProteinContainingComplex: <http://purl.obolibrary.org/obo/GO_0032991>
-PREFIX GoCellularComponent: <http://purl.obolibrary.org/obo/GO_0005575>
-PREFIX GoBiologicalProcess: <http://purl.obolibrary.org/obo/GO_0008150>
-PREFIX GoAnatomicalStructureDevelopment: <http://purl.obolibrary.org/obo/GO_0048856>
-PREFIX GoAnatomicalStructureFormationInvolvedInMorphogenesis: <http://purl.obolibrary.org/obo/GO_0048646>
-PREFIX GoAnatomicalStructureMorphogenesis: <http://purl.obolibrary.org/obo/GO_0009653>
-PREFIX GoCellDifferentiation: <http://purl.obolibrary.org/obo/GO_0030154>
-PREFIX GoCellDivision: <http://purl.obolibrary.org/obo/GO_0051301>
-PREFIX GoCellFateCommitment: <http://purl.obolibrary.org/obo/GO_0045165>
-PREFIX GoCellFateDetermination: <http://purl.obolibrary.org/obo/GO_0001709>
-PREFIX GoCellFateSpecification: <http://purl.obolibrary.org/obo/GO_0001708>
-PREFIX GoCellularComponentAssembly: <http://purl.obolibrary.org/obo/GO_0022607>
-PREFIX GoCellularComponentDisassembly: <http://purl.obolibrary.org/obo/GO_0022411>
-PREFIX GoCellularComponentOrganization: <http://purl.obolibrary.org/obo/GO_0016043>
-PREFIX GoDevelopmentalMaturation: <http://purl.obolibrary.org/obo/GO_0021700>
-PREFIX GoGrowth: <http://purl.obolibrary.org/obo/GO_0040007>
-PREFIX GoLocalization: <http://purl.obolibrary.org/obo/GO_0051179>
-PREFIX GoLocomotion: <http://purl.obolibrary.org/obo/GO_0040011>
-PREFIX GoProteinContainingComplexRemodeling: <http://purl.obolibrary.org/obo/GO_0034367>
-PREFIX GoPatternSpecificationProcess: <http://purl.obolibrary.org/obo/GO_0007389>
-PREFIX GoMetabolicProcess: <http://purl.obolibrary.org/obo/GO_0008152>
-PREFIX GoTransport: <http://purl.obolibrary.org/obo/GO_0006810>
-PREFIX GoMolecularFunction: <http://purl.obolibrary.org/obo/GO_0003674>
-prefix GoMolecularEvent: <http://purl.obolibrary.org/obo/go/extensions/reacto.owl#molecular_event>
-PREFIX GoTransporterActivity: <http://purl.obolibrary.org/obo/GO_0005215>
-PREFIX GoChemicalEntity: <http://purl.obolibrary.org/obo/CHEBI_24431>
-PREFIX GoEvidence: <http://purl.obolibrary.org/obo/ECO_0000000>
-PREFIX GoAnatomicalEntity: <http://purl.obolibrary.org/obo/CARO_0000000>
-PREFIX GoNativeCell: <http://purl.obolibrary.org/obo/CL_0000003>
-PREFIX GoOrganism: <http://purl.obolibrary.org/obo/NCBITaxon_1>
-PREFIX GoBiologicalPhase: <http://purl.obolibrary.org/obo/GO_0044848>
-PREFIX GoLifeCycleStage: <http://purl.obolibrary.org/obo/UBERON_0000105>
-PREFIX GoPlantStructureDevelopmentStage: <http://purl.obolibrary.org/obo/PO_0009012>
-#semantic: relations
-PREFIX part_of: <http://purl.obolibrary.org/obo/BFO_0000050>
-PREFIX has_part: <http://purl.obolibrary.org/obo/BFO_0000051>
-PREFIX occurs_in: <http://purl.obolibrary.org/obo/BFO_0000066>
-PREFIX adjacent_to: <http://purl.obolibrary.org/obo/RO_0002220>
-PREFIX overlaps: <http://purl.obolibrary.org/obo/RO_0002131>
-PREFIX existence_overlaps: <http://purl.obolibrary.org/obo/RO_0002490>
-PREFIX existence_starts_and_ends_during: <http://purl.obolibrary.org/obo/RO_0002491>
-PREFIX enabled_by: <http://purl.obolibrary.org/obo/RO_0002333>
-PREFIX contributes_to: <http://purl.obolibrary.org/obo/RO_0002326>
-PREFIX has_input: <http://purl.obolibrary.org/obo/RO_0002233>
-PREFIX has_output: <http://purl.obolibrary.org/obo/RO_0002234>
-PREFIX has_primary_input: <http://purl.obolibrary.org/obo/RO_0004009>
-PREFIX has_primary_output: <http://purl.obolibrary.org/obo/RO_0004008>
-PREFIX has_target_end_location: <http://purl.obolibrary.org/obo/RO_0002339>
-PREFIX has_target_start_location: <http://purl.obolibrary.org/obo/RO_0002338>
-PREFIX transports_or_maintains_localization_of: <http://purl.obolibrary.org/obo/RO_0002313>
-PREFIX directly_provides_input_for: <http://purl.obolibrary.org/obo/RO_0002413>
-PREFIX directly_positively_regulates: <http://purl.obolibrary.org/obo/RO_0002629>
-PREFIX located_in: <http://purl.obolibrary.org/obo/RO_0001025>
-PREFIX location_of: <http://purl.obolibrary.org/obo/RO_0001015>
-PREFIX is_active_in: <http://purl.obolibrary.org/obo/RO_0002432>
-PREFIX happens_during: <http://purl.obolibrary.org/obo/RO_0002092>
-PREFIX regulates: <http://purl.obolibrary.org/obo/RO_0002211>
-PREFIX negatively_regulates: <http://purl.obolibrary.org/obo/RO_0002212>
-PREFIX positively_regulates: <http://purl.obolibrary.org/obo/RO_0002213>
-PREFIX directly_regulates: <http://purl.obolibrary.org/obo/RO_0002578>
-PREFIX directly_negatively_regulates: <http://purl.obolibrary.org/obo/RO_0002630>
-PREFIX directly_activates: <http://purl.obolibrary.org/obo/RO_0002406>
-PREFIX indirectly_regulates: <http://purl.obolibrary.org/obo/RO_0012012>
-PREFIX indirectly_positively_regulates: <http://purl.obolibrary.org/obo/RO_0002407>
-PREFIX indirectly_negatively_regulates: <http://purl.obolibrary.org/obo/RO_0002409>
-PREFIX constitutively_upstream_of: <http://purl.obolibrary.org/obo/RO_0012009>
-PREFIX removes_input_for: <http://purl.obolibrary.org/obo/RO_0012010>
-PREFIX causally_upstream_of_or_within: <http://purl.obolibrary.org/obo/RO_0002418>
-PREFIX causally_upstream_of_or_within_negative_effect: <http://purl.obolibrary.org/obo/RO_0004046>
-PREFIX causally_upstream_of_or_within_positive_effect: <http://purl.obolibrary.org/obo/RO_0004047>
-PREFIX causally_upstream_of: <http://purl.obolibrary.org/obo/RO_0002411>
-PREFIX causally_upstream_of_negative_effect: <http://purl.obolibrary.org/obo/RO_0002305>
-PREFIX causally_upstream_of_positive_effect: <http://purl.obolibrary.org/obo/RO_0002304>
-PREFIX acts_on_population_of: <http://purl.obolibrary.org/obo/RO_0012003>
-PREFIX results_in_development_of: <http://purl.obolibrary.org/obo/RO_0002296>
-PREFIX results_in_formation_of: <http://purl.obolibrary.org/obo/RO_0002297>
-PREFIX results_in_morphogenesis_of: <http://purl.obolibrary.org/obo/RO_0002298>
-PREFIX results_in_acquisition_of_features_of: <http://purl.obolibrary.org/obo/RO_0002315>
-PREFIX results_in_commitment_to: <http://purl.obolibrary.org/obo/RO_0002348>
-PREFIX results_in_determination_of: <http://purl.obolibrary.org/obo/RO_0002349>
-PREFIX results_in_specification_of: <http://purl.obolibrary.org/obo/RO_0002356>
-PREFIX results_in_assembly_of: <http://purl.obolibrary.org/obo/RO_0002588>
-PREFIX results_in_disassembly_of: <http://purl.obolibrary.org/obo/RO_0002590>
-PREFIX results_in_organization_of: <http://purl.obolibrary.org/obo/RO_0002592>
-PREFIX results_in_maturation_of: <http://purl.obolibrary.org/obo/RO_0002299>
-PREFIX results_in_growth_of: <http://purl.obolibrary.org/obo/RO_0002343>
-PREFIX results_in_movement_of: <http://purl.obolibrary.org/obo/RO_0002565>
-PREFIX results_in_remodeling_of: <http://purl.obolibrary.org/obo/RO_0002591>
-
-<GoCamModel> {
-  a [owl:Ontology] + ;
-  contributor: xsd:string +; #TODO would be better as an IRI
-  modification_date: xsd:string {1}; #Use ISO 8601 as a standard.
-  creation_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
-  import_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
-  provided_by: xsd:string +; #TODO would be better as an IRI
-  rdfs:comment xsd:string *;
-  modelstate: xsd:string {1}; #TODO would be better as an IRI
-  templatestate: xsd:string {0,1}; #TODO should be modeled as xsd:boolean but currently a string. No value means false.
-  in_taxon: . *;
-  title: xsd:string {1};
-  imports: . *;
-  oboinowlid: . *; #TODO not sure if we really want this?
-  owl:versionIRI . *;
-  prov:wasDerivedFrom IRI {0,1}; # for model copy
-}
-
-<ProvenanceAnnotated> {
-  contributor: xsd:string +; #TODO would be better as an IRI
-  modification_date: xsd:string {1}; #Use ISO 8601 as a standard.
-  creation_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
-  import_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
-  provided_by: xsd:string *; #TODO would be better as an IRI
-  rdfs:comment xsd:string *;
-  skos:note xsd:string *;
-}
-
-<GoCamEntity> IRI @<ProvenanceAnnotated> AND EXTRA a {
-  a [owl:NamedIndividual] * // rdfs:comment  "Every entity we care about is a named individual";
-  xref: . * // rdfs:comment "mappings for the entity. Value is typically a CURIE string. Currently this is only used for Reactome-derived models." ;
-  rdfs:label . {0,1} // rdfs:comment "the name of the entity. Currently this is only used for Reactome-derived models." ;
-  exact_match: . *;
-  x: . {0,1} // rdfs:comment  "X coordinate for node. This is used for caching layouts in the Noctua Graph Editor.";
-  y: . {0,1} // rdfs:comment  "Y coordinate for node. This is used for caching layouts in the Noctua Graph Editor.";
-  skos:narrower . * // rdfs:comment "This entity (e.g. a node representing a pathway) represents a narrower (in any sense) concept then the target node. ";
-  skos:broader . * // rdfs:comment "This entity (e.g. a node representing a pathway) represents a broader (in any sense) concept then the target node. ";
-} // rdfs:comment  "Default allowable metadata for GO-CAM entities"
-
-<OwlClass> {
-  rdf:type [ owl:Class ] {1};
-}
-
-<BiologicalProcessClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoBiologicalProcess: ] ;
-}
-
-<NegatedBiologicalProcessClass> BNode @<OwlClass> AND {
-  owl:complementOf @<BiologicalProcessClass>
-}
-
-<OrganismClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoOrganism: ] ;
-}
-
-<Organism> @<GoCamEntity> AND EXTRA a {
- a @<OrganismClass> ;
-} // rdfs:comment "A member of a class of organisms defined in the NCBI taxonomy"
-
-<BiologicalProcess> @<GoCamEntity> AND EXTRA a {
-  a ( @<BiologicalProcessClass> OR @<NegatedBiologicalProcessClass> ) {1};
-  part_of: @<BiologicalProcess> *;
-  has_input: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> OR @<Organism> ) *;
-  has_output: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> ) *;
-  occurs_in: @<AnatomicalEntity> {0,1};
-  transports_or_maintains_localization_of: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
-  has_target_end_location: @<AnatomicalEntity> {0,1};
-  has_target_start_location: @<AnatomicalEntity> {0,1};
-  causally_upstream_of: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *;
-  causally_upstream_of_negative_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *;
-  causally_upstream_of_positive_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *;
-  regulates: @<BiologicalProcess> *;
-  negatively_regulates: @<BiologicalProcess> *;
-  positively_regulates: @<BiologicalProcess> *;
-  acts_on_population_of: ( @<AnatomicalEntity> OR @<Organism> ) *;
-} // rdfs:comment  "A biological process"
-
-
-<AnatomicalStructureDevelopmentClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoAnatomicalStructureDevelopment: ] ;
-}
-
-<AnatomicalStructureDevelopment> @<BiologicalProcess> AND EXTRA a {
-  a @<AnatomicalStructureDevelopmentClass> {1};
-  results_in_development_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "an anatomical structure development class GO biological process or child"
-
-<AnatomicalStructureFormationInvolvedInMorphogenesisClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoAnatomicalStructureFormationInvolvedInMorphogenesis: ] ;
-}
-
-<AnatomicalStructureFormationInvolvedInMorphogenesis> @<BiologicalProcess> AND EXTRA a {
-  a @<AnatomicalStructureFormationInvolvedInMorphogenesisClass> {1};
-  results_in_formation_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "an anatomical structure formation involved in morphogenesis class GO biological process or child"
-
-<AnatomicalStructureMorphogenesisClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoAnatomicalStructureMorphogenesis: ] ;
-}
-
-<AnatomicalStructureMorphogenesis> @<BiologicalProcess> AND EXTRA a {
-  a @<AnatomicalStructureMorphogenesisClass> {1};
-  results_in_morphogenesis_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "an anatomical structure morphogenesis class GO biological process or child"
-
-<CellDifferentiationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellDifferentiation: ] ;
-}
-
-<CellDifferentiation> @<BiologicalProcess> AND EXTRA a {
-  a @<CellDifferentiationClass> {1};
-  results_in_acquisition_of_features_of: @<NativeCell> {0,1};
-} // rdfs:comment "a cell differentiation GO biological process or child"
-
-<CellDivisionClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellDivision: ] ;
-}
-
-<CellDivision> @<BiologicalProcess> AND EXTRA a {
-  a @<CellDivisionClass> {1};
-  has_input: @<NativeCell> {0,1};
-} // rdfs:comment "a cell division GO biological process or child"
-
-<CellFateCommitmentClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellFateCommitment: ] ;
-}
-
-<CellFateCommitment> @<BiologicalProcess> AND EXTRA a {
-  a @<CellFateCommitmentClass> {1};
-  results_in_commitment_to: @<NativeCell> {0,1};
-} // rdfs:comment "a cell fate commitment GO biological process or child"
-
-<CellFateDeterminationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellFateDetermination: ] ;
-}
-
-<CellFateDetermination> @<BiologicalProcess> AND EXTRA a {
-  a @<CellFateDeterminationClass> {1};
-  results_in_determination_of: @<NativeCell> {0,1};
-} // rdfs:comment "a cell fate determination GO biological process or child"
-
-<CellFateSpecificationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellFateSpecification: ] ;
-}
-
-<CellFateSpecification> @<BiologicalProcess> AND EXTRA a {
-  a @<CellFateSpecificationClass> {1};
-  results_in_specification_of: @<NativeCell> {0,1};
-} // rdfs:comment "a cell fate specification GO biological process or child"
-
-<CellularComponentAssemblyClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellularComponentAssembly: ] ;
-}
-
-<CellularComponentAssembly> @<BiologicalProcess> AND EXTRA a {
-  a @<CellularComponentAssemblyClass> {1};
-  results_in_assembly_of: @<CellularComponent> {0,1};
-} // rdfs:comment "a cellular component assembly GO biological process or child"
-
-<CellularComponentDisassemblyClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellularComponentDisassembly: ] ;
-}
-
-<CellularComponentDisassembly> @<BiologicalProcess> AND EXTRA a {
-  a @<CellularComponentDisassemblyClass> {1};
-  results_in_disassembly_of: @<CellularComponent> {0,1};
-} // rdfs:comment "a cellular component disassembly GO biological process or child"
-
-<CellularComponentOrganizationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoCellularComponentOrganization: ] ;
-}
-
-<CellularComponentOrganization> @<BiologicalProcess> AND EXTRA a {
-  a @<CellularComponentOrganizationClass> {1};
-  results_in_organization_of: @<CellularComponent> {0,1};
-} // rdfs:comment "a cellular component organization GO biological process or child"
-
-<DevelopmentalMaturationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoDevelopmentalMaturation: ] ;
-}
-
-<DevelopmentalMaturation> @<BiologicalProcess> AND EXTRA a {
-  a @<DevelopmentalMaturationClass> {1};
-  results_in_maturation_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "a developmental maturation GO biological process or child"
-
-<GrowthClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoGrowth: ] ;
-}
-
-<Growth> @<BiologicalProcess> AND EXTRA a {
-  a @<GrowthClass> {1};
-  results_in_growth_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "a growth GO biological process or child"
-
-<LocalizationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoLocalization: ] ;
-}
-
-<Localization> @<BiologicalProcess> AND EXTRA a {
-  a @<LocalizationClass> {1};
-  transports_or_maintains_localization_of: ( @<AnatomicalEntity> OR @<ChemicalEntity> OR @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
-  has_target_end_location: @<AnatomicalEntity> {0,1};
-  has_target_start_location: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "a localization GO biological process or child"
-
-<LocomotionClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoLocomotion: ] ;
-}
-
-<Locomotion> @<BiologicalProcess> AND EXTRA a {
-  a @<LocomotionClass> {1};
-  results_in_movement_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "a locomotion GO biological process or child"
-
-<MetabolicProcessClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoMetabolicProcess: ] ;
-}
-
-<MetabolicProcess> @<BiologicalProcess> AND EXTRA a {
-  a @<MetabolicProcessClass> {1};
-  has_primary_input: @<ChemicalEntity> *;
-  has_primary_output: @<ChemicalEntity> *;
-} // rdfs:comment "a metabolic process GO biological process or child"
-
-<ProteinContainingComplexRemodelingClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoProteinContainingComplexRemodeling: ] ;
-}
-
-<ProteinContainingComplexRemodeling> @<BiologicalProcess> AND EXTRA a {
-  a @<ProteinContainingComplexRemodelingClass> {1};
-  results_in_remodeling_of: @<ProteinContainingComplex> {0,1};
-} // rdfs:comment "a protein containing complex remodeling GO biological process or child"
-
-<PatternSpecificationProcessClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoPatternSpecificationProcess: ] ;
-}
-
-<PatternSpecificationProcess> @<BiologicalProcess> AND EXTRA a {
-  a @<PatternSpecificationProcessClass> {1};
-  results_in_specification_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment "a pattern specification process GO biological process or child"
-
-<TransportClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-	rdfs:subClassOf [ GoTransport: ] ;
-}
-
-<Transport> @<BiologicalProcess> AND EXTRA a {
-  a @<TransportClass> {1};
-  has_primary_input: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> ) *;
-  has_primary_output: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> ) *;
-} // rdfs:comment "a transport GO biological process or child"
-
-<MolecularFunctionClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoMolecularFunction: ] ;
-}
-
-<NegatedMolecularFunctionClass> BNode @<OwlClass> AND {
-  owl:complementOf @<MolecularFunctionClass>
-}
-
-<MolecularEventClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoMolecularEvent: ] ;
-}
-
-<NegatedMolecularEventClass> BNode @<OwlClass> AND {
-  owl:complementOf @<MolecularEventClass>
-}
-
-<MolecularEvent> @<GoCamEntity> AND EXTRA a {
-  a ( @<MolecularEventClass> OR @<NegatedMolecularEventClass> ) {1};
-}
-
-<MolecularFunction> @<GoCamEntity> AND EXTRA a {
-  a ( @<MolecularFunctionClass> OR @<NegatedMolecularFunctionClass> ) {1};
-  enabled_by:  ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) {0,1};
-  part_of: @<BiologicalProcess> *;
-  has_part: @<MolecularFunction> *;
-  occurs_in: @<AnatomicalEntity> {0,1};
-  has_output: ( @<ChemicalEntity> OR @<ProteinContainingComplex> ) *;
-  has_input: ( @<ChemicalEntity> OR @<ProteinContainingComplex> ) *;
-  directly_provides_input_for: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  negatively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  positively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  directly_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  directly_negatively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  directly_positively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  indirectly_regulates: ( @<MolecularFunction> OR @<MolecularEvent>) *;
-  indirectly_positively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  indirectly_negatively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  constitutively_upstream_of: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  removes_input_for: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
-  causally_upstream_of_or_within: ( @<MolecularFunction> OR @<MolecularEvent> OR @<BiologicalProcess> ) *;
-  causally_upstream_of_or_within_negative_effect: @<BiologicalProcess> *;
-  causally_upstream_of_or_within_positive_effect: @<BiologicalProcess> *;
-  causally_upstream_of: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *;
-  causally_upstream_of_negative_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *;
-  causally_upstream_of_positive_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *;
-  happens_during: ( @<BiologicalPhase> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
-} // rdfs:comment  "A molecular function"
-
-<TransporterActivityClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoTransporterActivity: ];
-}
-
-<TransporterActivity> @<MolecularFunction> AND EXTRA a {
-  a @<TransporterActivityClass> {1};
-  transports_or_maintains_localization_of: ( @<ChemicalEntity> OR @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
-  has_target_end_location: @<CellularComponent> *;
-  has_target_start_location: @<CellularComponent> *;
-} // rdfs:comment "a transporter activity GO molecular function or child"
-
-<BiologicalPhaseClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoBiologicalPhase: ];
-}
-
-<BiologicalPhase> @<GoCamEntity> AND EXTRA a {
-  a @<BiologicalPhaseClass>;
-} // rdfs:comment  "a biological phase"
-
-<LifeCycleStageClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoLifeCycleStage: ];
-}
-
-<LifeCycleStage> @<GoCamEntity> AND EXTRA a {
-  a @<LifeCycleStageClass>;
-} // rdfs:comment  "a lifecycle stage"
-
-<PlantStructureDevelopmentStageClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoPlantStructureDevelopmentStage: ];
-}
-
-<PlantStructureDevelopmentStage> @<GoCamEntity> AND EXTRA a {
-  a @<PlantStructureDevelopmentStageClass>;
-} // rdfs:comment  "a plant structure developmental stage"
-
-<AnatomicalEntityClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoAnatomicalEntity: ];
-}
-
-<NegatedAnatomicalEntityClass> BNode @<OwlClass> AND {
-  owl:complementOf @<AnatomicalEntityClass>
-}
-
-<AnatomicalEntity> @<GoCamEntity> AND EXTRA a {
-  a ( @<AnatomicalEntityClass> OR @<NegatedAnatomicalEntityClass> );
-  part_of: @<AnatomicalEntity> {0,1};
-  location_of: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) {0,1};
-} // rdfs:comment  "an anatomical entity"
-
-<NativeCellClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoNativeCell: ];
-}
-
-<NativeCell> @<GoCamEntity> AND EXTRA a {
-  a @<NativeCellClass> {1};
-  part_of: @<AnatomicalEntity> {0,1};
-} // rdfs:comment  "a native cell or child"
-
-<CellularComponentClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoCellularComponent: ];
-}
-
-<NegatedCellularComponentClass> BNode @<OwlClass> AND {
-  owl:complementOf @<CellularComponentClass>
-}
-
-<RootCellularComponent> IRI @<GoCamEntity> AND EXTRA a {
-  a [ GoCellularComponent: ];
-}
-
-#<CellularComponent> @<AnatomicalEntity> AND EXTRA a { # If we want to intersect with anatomical entity, then GO cellular_component needs to subclass anatomical entity in go-lego
-<CellularComponent> @<GoCamEntity> AND EXTRA a {
-  a ( @<CellularComponentClass> OR @<NegatedCellularComponentClass> ) {1};
-  part_of: @<AnatomicalEntity> {0,1};
-  adjacent_to: @<AnatomicalEntity> *;
-  overlaps: @<AnatomicalEntity> *;
-  existence_overlaps: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
-  existence_starts_and_ends_during: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
-} // rdfs:comment  "a cellular component"
-
-<ProteinContainingComplex> @<GoCamEntity> AND EXTRA a {
-  a @<ProteinContainingComplexClass>;
-  located_in: @<AnatomicalEntity> {0,1};
-  is_active_in: @<AnatomicalEntity> OR @<RootCellularComponent> {0,1};
-  has_part: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex>) *;
-  existence_overlaps: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
-  existence_starts_and_ends_during: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
-} // rdfs:comment  "a protein complex"
-
-<ProteinContainingComplexClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoProteinContainingComplex: ];
-}
-
-<ChemicalEntity> @<GoCamEntity> AND EXTRA a {
-  a @<ChemicalEntityClass> +;
-}// rdfs:comment  "a molecular entity (a gene product, chemical, or complex typically)"
-
-<ChemicalEntityClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf  {
-  rdfs:subClassOf [ GoChemicalEntity: ];
-}
-
-<ProteinClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoProtein: ];
-}
-<Protein> @<ChemicalEntity> AND EXTRA a {
-  a @<ProteinClass> ;
-  located_in: @<AnatomicalEntity> {0,1};
-  is_active_in: @<AnatomicalEntity> OR @<RootCellularComponent> {0,1};
-  part_of: @<ProteinContainingComplex> {0,1};
-  contributes_to: @<MolecularFunction> {0,1};
-}// rdfs:comment  "a protein"
-
-
-<InformationBiomacromoleculeClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoInformationBiomacromolecule: ];
-}
-<InformationBiomacromolecule> @<ChemicalEntity> AND EXTRA a {
-   a @<InformationBiomacromoleculeClass> +;
-   located_in: @<AnatomicalEntity> {0,1};
-   is_active_in: @<AnatomicalEntity> OR @<RootCellularComponent> {0,1};
-   part_of: @<ProteinContainingComplex> {0,1};
-   contributes_to: @<MolecularFunction> {0,1};
-}// rdfs:comment  "an information biomacromolecule - e.g. a protein or RNA product"
-
-<EvidenceClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
-  rdfs:subClassOf [ GoEvidence: ] ;
-}
-
-<Evidence> @<GoCamEntity> AND EXTRA a  {
-  a @<EvidenceClass> {1};
-  source: xsd:string {1};
-  with: xsd:string {0,1}
-}// rdfs:comment  "A kind of evidence"
-
-<AnnotatedEdge> BNode @<ProvenanceAnnotated> AND {
-  a [ owl:Axiom ] ;
-  owl:annotatedSource @<GoCamEntity> ;
-  owl:annotatedProperty IRI ;
-  owl:annotatedTarget @<GoCamEntity> ;
-  evidence: @<Evidence> *
-}
-
-#<BL_UNTYPED> {
-#   bl:category . {0}
-#   // rdfs:comment  "has no type tag inside" ;
-#} // rdfs:comment  "has no type tag full rule"
-
-#<BL_TYPED> {
-#   bl:category . {1}
-#} // rdfs:comment  "has exactly one type tag"
-
-#<BL_MULTI_TYPED> {
-#   bl:category . {2,}
-#} // rdfs:comment  "has multiple type tags"
+BASE   <http://purl.obolibrary.org/obo/go/shapes/>
+PREFIX obo: <http://purl.obolibrary.org/obo/>
+PREFIX rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
+PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
+PREFIX prov: <http://www.w3.org/ns/prov#>
+#metadata
+PREFIX bl: <https://w3id.org/biolink/vocab/>
+PREFIX contributor: <http://purl.org/dc/elements/1.1/contributor>
+PREFIX provided_by: <http://purl.org/pav/providedBy>
+PREFIX modification_date: <http://purl.org/dc/elements/1.1/date>
+PREFIX creation_date: <http://purl.org/dc/terms/created>
+PREFIX import_date: <http://purl.org/dc/terms/dateAccepted>
+PREFIX xref: <http://www.geneontology.org/formats/oboInOwl#hasDbXref>
+PREFIX exact_match: <http://www.w3.org/2004/02/skos/core#exactMatch>
+PREFIX source: <http://purl.org/dc/elements/1.1/source>
+PREFIX evidence: <http://geneontology.org/lego/evidence>
+PREFIX with: <http://geneontology.org/lego/evidence-with>
+PREFIX x: <http://geneontology.org/lego/hint/layout/x>
+PREFIX y: <http://geneontology.org/lego/hint/layout/y>
+#model level annotations
+PREFIX ontology: <http://www.w3.org/2002/07/owl#Ontology>
+PREFIX taxon: <https://w3id.org/biolink/vocab/in_taxon>
+PREFIX modelstate: <http://geneontology.org/lego/modelstate>
+PREFIX templatestate: <http://geneontology.org/lego/templatestate>
+PREFIX oboinowlid: <http://www.geneontology.org/formats/oboInOwl#id>
+###contributor, date, providedBy reused
+PREFIX title: <http://purl.org/dc/elements/1.1/title>
+PREFIX imports: <http://www.w3.org/2002/07/owl#imports>
+# always limit imports to? <http://purl.obolibrary.org/obo/go/extensions/go-lego.owl> ;
+PREFIX in_taxon: <https://w3id.org/biolink/vocab/in_taxon>
+#semantic: classes
+PREFIX GoInformationBiomacromolecule: <http://purl.obolibrary.org/obo/CHEBI_33695>
+PREFIX GoProtein: <http://purl.obolibrary.org/obo/CHEBI_36080>
+PREFIX GoProteinContainingComplex: <http://purl.obolibrary.org/obo/GO_0032991>
+PREFIX GoCellularComponent: <http://purl.obolibrary.org/obo/GO_0005575>
+PREFIX GoBiologicalProcess: <http://purl.obolibrary.org/obo/GO_0008150>
+PREFIX GoAnatomicalStructureDevelopment: <http://purl.obolibrary.org/obo/GO_0048856>
+PREFIX GoAnatomicalStructureFormationInvolvedInMorphogenesis: <http://purl.obolibrary.org/obo/GO_0048646>
+PREFIX GoAnatomicalStructureMorphogenesis: <http://purl.obolibrary.org/obo/GO_0009653>
+PREFIX GoCellDifferentiation: <http://purl.obolibrary.org/obo/GO_0030154>
+PREFIX GoCellDivision: <http://purl.obolibrary.org/obo/GO_0051301>
+PREFIX GoCellFateCommitment: <http://purl.obolibrary.org/obo/GO_0045165>
+PREFIX GoCellFateDetermination: <http://purl.obolibrary.org/obo/GO_0001709>
+PREFIX GoCellFateSpecification: <http://purl.obolibrary.org/obo/GO_0001708>
+PREFIX GoCellularComponentAssembly: <http://purl.obolibrary.org/obo/GO_0022607>
+PREFIX GoCellularComponentDisassembly: <http://purl.obolibrary.org/obo/GO_0022411>
+PREFIX GoCellularComponentOrganization: <http://purl.obolibrary.org/obo/GO_0016043>
+PREFIX GoDevelopmentalMaturation: <http://purl.obolibrary.org/obo/GO_0021700>
+PREFIX GoGrowth: <http://purl.obolibrary.org/obo/GO_0040007>
+PREFIX GoLocalization: <http://purl.obolibrary.org/obo/GO_0051179>
+PREFIX GoLocomotion: <http://purl.obolibrary.org/obo/GO_0040011>
+PREFIX GoProteinContainingComplexRemodeling: <http://purl.obolibrary.org/obo/GO_0034367>
+PREFIX GoPatternSpecificationProcess: <http://purl.obolibrary.org/obo/GO_0007389>
+PREFIX GoMetabolicProcess: <http://purl.obolibrary.org/obo/GO_0008152>
+PREFIX GoTransport: <http://purl.obolibrary.org/obo/GO_0006810>
+PREFIX GoMolecularFunction: <http://purl.obolibrary.org/obo/GO_0003674>
+prefix GoMolecularEvent: <http://purl.obolibrary.org/obo/go/extensions/reacto.owl#molecular_event>
+PREFIX GoTransporterActivity: <http://purl.obolibrary.org/obo/GO_0005215>
+PREFIX GoChemicalEntity: <http://purl.obolibrary.org/obo/CHEBI_24431>
+PREFIX GoEvidence: <http://purl.obolibrary.org/obo/ECO_0000000>
+PREFIX GoAnatomicalEntity: <http://purl.obolibrary.org/obo/CARO_0000000>
+PREFIX GoNativeCell: <http://purl.obolibrary.org/obo/CL_0000003>
+PREFIX GoOrganism: <http://purl.obolibrary.org/obo/NCBITaxon_1>
+PREFIX GoBiologicalPhase: <http://purl.obolibrary.org/obo/GO_0044848>
+PREFIX GoLifeCycleStage: <http://purl.obolibrary.org/obo/UBERON_0000105>
+PREFIX GoPlantStructureDevelopmentStage: <http://purl.obolibrary.org/obo/PO_0009012>
+#semantic: relations
+PREFIX part_of: <http://purl.obolibrary.org/obo/BFO_0000050>
+PREFIX has_part: <http://purl.obolibrary.org/obo/BFO_0000051>
+PREFIX occurs_in: <http://purl.obolibrary.org/obo/BFO_0000066>
+PREFIX adjacent_to: <http://purl.obolibrary.org/obo/RO_0002220>
+PREFIX overlaps: <http://purl.obolibrary.org/obo/RO_0002131>
+PREFIX existence_overlaps: <http://purl.obolibrary.org/obo/RO_0002490>
+PREFIX existence_starts_and_ends_during: <http://purl.obolibrary.org/obo/RO_0002491>
+PREFIX enabled_by: <http://purl.obolibrary.org/obo/RO_0002333>
+PREFIX contributes_to: <http://purl.obolibrary.org/obo/RO_0002326>
+PREFIX has_input: <http://purl.obolibrary.org/obo/RO_0002233>
+PREFIX has_output: <http://purl.obolibrary.org/obo/RO_0002234>
+PREFIX has_primary_input: <http://purl.obolibrary.org/obo/RO_0004009>
+PREFIX has_primary_output: <http://purl.obolibrary.org/obo/RO_0004008>
+PREFIX has_target_end_location: <http://purl.obolibrary.org/obo/RO_0002339>
+PREFIX has_target_start_location: <http://purl.obolibrary.org/obo/RO_0002338>
+PREFIX transports_or_maintains_localization_of: <http://purl.obolibrary.org/obo/RO_0002313>
+PREFIX directly_provides_input_for: <http://purl.obolibrary.org/obo/RO_0002413>
+PREFIX directly_positively_regulates: <http://purl.obolibrary.org/obo/RO_0002629>
+PREFIX located_in: <http://purl.obolibrary.org/obo/RO_0001025>
+PREFIX location_of: <http://purl.obolibrary.org/obo/RO_0001015>
+PREFIX is_active_in: <http://purl.obolibrary.org/obo/RO_0002432>
+PREFIX happens_during: <http://purl.obolibrary.org/obo/RO_0002092>
+PREFIX regulates: <http://purl.obolibrary.org/obo/RO_0002211>
+PREFIX negatively_regulates: <http://purl.obolibrary.org/obo/RO_0002212>
+PREFIX positively_regulates: <http://purl.obolibrary.org/obo/RO_0002213>
+PREFIX directly_regulates: <http://purl.obolibrary.org/obo/RO_0002578>
+PREFIX directly_negatively_regulates: <http://purl.obolibrary.org/obo/RO_0002630>
+PREFIX directly_activates: <http://purl.obolibrary.org/obo/RO_0002406>
+PREFIX indirectly_regulates: <http://purl.obolibrary.org/obo/RO_0012012>
+PREFIX indirectly_positively_regulates: <http://purl.obolibrary.org/obo/RO_0002407>
+PREFIX indirectly_negatively_regulates: <http://purl.obolibrary.org/obo/RO_0002409>
+PREFIX constitutively_upstream_of: <http://purl.obolibrary.org/obo/RO_0012009>
+PREFIX removes_input_for: <http://purl.obolibrary.org/obo/RO_0012010>
+PREFIX causally_upstream_of_or_within: <http://purl.obolibrary.org/obo/RO_0002418>
+PREFIX causally_upstream_of_or_within_negative_effect: <http://purl.obolibrary.org/obo/RO_0004046>
+PREFIX causally_upstream_of_or_within_positive_effect: <http://purl.obolibrary.org/obo/RO_0004047>
+PREFIX causally_upstream_of: <http://purl.obolibrary.org/obo/RO_0002411>
+PREFIX causally_upstream_of_negative_effect: <http://purl.obolibrary.org/obo/RO_0002305>
+PREFIX causally_upstream_of_positive_effect: <http://purl.obolibrary.org/obo/RO_0002304>
+PREFIX acts_on_population_of: <http://purl.obolibrary.org/obo/RO_0012003>
+PREFIX results_in_development_of: <http://purl.obolibrary.org/obo/RO_0002296>
+PREFIX results_in_formation_of: <http://purl.obolibrary.org/obo/RO_0002297>
+PREFIX results_in_morphogenesis_of: <http://purl.obolibrary.org/obo/RO_0002298>
+PREFIX results_in_acquisition_of_features_of: <http://purl.obolibrary.org/obo/RO_0002315>
+PREFIX results_in_commitment_to: <http://purl.obolibrary.org/obo/RO_0002348>
+PREFIX results_in_determination_of: <http://purl.obolibrary.org/obo/RO_0002349>
+PREFIX results_in_specification_of: <http://purl.obolibrary.org/obo/RO_0002356>
+PREFIX results_in_assembly_of: <http://purl.obolibrary.org/obo/RO_0002588>
+PREFIX results_in_disassembly_of: <http://purl.obolibrary.org/obo/RO_0002590>
+PREFIX results_in_organization_of: <http://purl.obolibrary.org/obo/RO_0002592>
+PREFIX results_in_maturation_of: <http://purl.obolibrary.org/obo/RO_0002299>
+PREFIX results_in_growth_of: <http://purl.obolibrary.org/obo/RO_0002343>
+PREFIX results_in_movement_of: <http://purl.obolibrary.org/obo/RO_0002565>
+PREFIX results_in_remodeling_of: <http://purl.obolibrary.org/obo/RO_0002591>
+
+<GoCamModel> {
+  a [owl:Ontology] + ;
+  contributor: xsd:string +; #TODO would be better as an IRI
+  modification_date: xsd:string {1}; #Use ISO 8601 as a standard.
+  creation_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
+  import_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
+  provided_by: xsd:string +; #TODO would be better as an IRI
+  rdfs:comment xsd:string *;
+  modelstate: xsd:string {1}; #TODO would be better as an IRI
+  templatestate: xsd:string {0,1}; #TODO should be modeled as xsd:boolean but currently a string. No value means false.
+  in_taxon: . *;
+  title: xsd:string {1};
+  imports: . *;
+  oboinowlid: . *; #TODO not sure if we really want this?
+  owl:versionIRI . *;
+  prov:wasDerivedFrom IRI {0,1}; # for model copy
+}
+
+<ProvenanceAnnotated> {
+  contributor: xsd:string +; #TODO would be better as an IRI
+  modification_date: xsd:string {1}; #Use ISO 8601 as a standard.
+  creation_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
+  import_date: xsd:string {0,1}; #Use ISO 8601 as a standard.
+  provided_by: xsd:string *; #TODO would be better as an IRI
+  rdfs:comment xsd:string *;
+  skos:note xsd:string *;
+}
+
+<GoCamEntity> IRI @<ProvenanceAnnotated> AND EXTRA a {
+  a [owl:NamedIndividual] * // rdfs:comment  "Every entity we care about is a named individual";
+  xref: . * // rdfs:comment "mappings for the entity. Value is typically a CURIE string. Currently this is only used for Reactome-derived models." ;
+  rdfs:label . {0,1} // rdfs:comment "the name of the entity. Currently this is only used for Reactome-derived models." ;
+  exact_match: . *;
+  x: . {0,1} // rdfs:comment  "X coordinate for node. This is used for caching layouts in the Noctua Graph Editor.";
+  y: . {0,1} // rdfs:comment  "Y coordinate for node. This is used for caching layouts in the Noctua Graph Editor.";
+  skos:narrower . * // rdfs:comment "This entity (e.g. a node representing a pathway) represents a narrower (in any sense) concept then the target node. ";
+  skos:broader . * // rdfs:comment "This entity (e.g. a node representing a pathway) represents a broader (in any sense) concept then the target node. ";
+} // rdfs:comment  "Default allowable metadata for GO-CAM entities"
+
+<OwlClass> {
+  rdf:type [ owl:Class ] {1};
+}
+
+<BiologicalProcessClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoBiologicalProcess: ] ;
+}
+
+<NegatedBiologicalProcessClass> BNode @<OwlClass> AND {
+  owl:complementOf @<BiologicalProcessClass>
+}
+
+<OrganismClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoOrganism: ] ;
+}
+
+<Organism> @<GoCamEntity> AND EXTRA a {
+ a @<OrganismClass> ;
+} // rdfs:comment "A member of a class of organisms defined in the NCBI taxonomy"
+
+<BiologicalProcess> @<GoCamEntity> AND EXTRA a {
+  a ( @<BiologicalProcessClass> OR @<NegatedBiologicalProcessClass> ) {1};
+  part_of: @<BiologicalProcess> * // <exclude_from_extensions> true;
+  has_input: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> OR @<Organism> ) *;
+  has_output: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> ) *;
+  occurs_in: @<AnatomicalEntity> {0,1} // <exclude_from_extensions> true;
+  transports_or_maintains_localization_of: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
+  has_target_end_location: @<AnatomicalEntity> {0,1};
+  has_target_start_location: @<AnatomicalEntity> {0,1};
+  causally_upstream_of: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) * // <exclude_from_extensions> true;
+  causally_upstream_of_negative_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) * // <exclude_from_extensions> true;
+  causally_upstream_of_positive_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) * // <exclude_from_extensions> true;
+  regulates: @<BiologicalProcess> *  // <exclude_from_extensions> true;
+  negatively_regulates: @<BiologicalProcess> *  // <exclude_from_extensions> true;
+  positively_regulates: @<BiologicalProcess> *  // <exclude_from_extensions> true;
+  acts_on_population_of: ( @<AnatomicalEntity> OR @<Organism> ) *;
+} // rdfs:comment  "A biological process"
+
+
+<AnatomicalStructureDevelopmentClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoAnatomicalStructureDevelopment: ] ;
+}
+
+<AnatomicalStructureDevelopment> @<BiologicalProcess> AND EXTRA a {
+  a @<AnatomicalStructureDevelopmentClass> {1};
+  results_in_development_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "an anatomical structure development class GO biological process or child"
+
+<AnatomicalStructureFormationInvolvedInMorphogenesisClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoAnatomicalStructureFormationInvolvedInMorphogenesis: ] ;
+}
+
+<AnatomicalStructureFormationInvolvedInMorphogenesis> @<BiologicalProcess> AND EXTRA a {
+  a @<AnatomicalStructureFormationInvolvedInMorphogenesisClass> {1};
+  results_in_formation_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "an anatomical structure formation involved in morphogenesis class GO biological process or child"
+
+<AnatomicalStructureMorphogenesisClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoAnatomicalStructureMorphogenesis: ] ;
+}
+
+<AnatomicalStructureMorphogenesis> @<BiologicalProcess> AND EXTRA a {
+  a @<AnatomicalStructureMorphogenesisClass> {1};
+  results_in_morphogenesis_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "an anatomical structure morphogenesis class GO biological process or child"
+
+<CellDifferentiationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellDifferentiation: ] ;
+}
+
+<CellDifferentiation> @<BiologicalProcess> AND EXTRA a {
+  a @<CellDifferentiationClass> {1};
+  results_in_acquisition_of_features_of: @<NativeCell> {0,1};
+} // rdfs:comment "a cell differentiation GO biological process or child"
+
+<CellDivisionClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellDivision: ] ;
+}
+
+<CellDivision> @<BiologicalProcess> AND EXTRA a {
+  a @<CellDivisionClass> {1};
+  has_input: @<NativeCell> {0,1};
+} // rdfs:comment "a cell division GO biological process or child"
+
+<CellFateCommitmentClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellFateCommitment: ] ;
+}
+
+<CellFateCommitment> @<BiologicalProcess> AND EXTRA a {
+  a @<CellFateCommitmentClass> {1};
+  results_in_commitment_to: @<NativeCell> {0,1};
+} // rdfs:comment "a cell fate commitment GO biological process or child"
+
+<CellFateDeterminationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellFateDetermination: ] ;
+}
+
+<CellFateDetermination> @<BiologicalProcess> AND EXTRA a {
+  a @<CellFateDeterminationClass> {1};
+  results_in_determination_of: @<NativeCell> {0,1};
+} // rdfs:comment "a cell fate determination GO biological process or child"
+
+<CellFateSpecificationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellFateSpecification: ] ;
+}
+
+<CellFateSpecification> @<BiologicalProcess> AND EXTRA a {
+  a @<CellFateSpecificationClass> {1};
+  results_in_specification_of: @<NativeCell> {0,1};
+} // rdfs:comment "a cell fate specification GO biological process or child"
+
+<CellularComponentAssemblyClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellularComponentAssembly: ] ;
+}
+
+<CellularComponentAssembly> @<BiologicalProcess> AND EXTRA a {
+  a @<CellularComponentAssemblyClass> {1};
+  results_in_assembly_of: @<CellularComponent> {0,1};
+} // rdfs:comment "a cellular component assembly GO biological process or child"
+
+<CellularComponentDisassemblyClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellularComponentDisassembly: ] ;
+}
+
+<CellularComponentDisassembly> @<BiologicalProcess> AND EXTRA a {
+  a @<CellularComponentDisassemblyClass> {1};
+  results_in_disassembly_of: @<CellularComponent> {0,1};
+} // rdfs:comment "a cellular component disassembly GO biological process or child"
+
+<CellularComponentOrganizationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoCellularComponentOrganization: ] ;
+}
+
+<CellularComponentOrganization> @<BiologicalProcess> AND EXTRA a {
+  a @<CellularComponentOrganizationClass> {1};
+  results_in_organization_of: @<CellularComponent> {0,1};
+} // rdfs:comment "a cellular component organization GO biological process or child"
+
+<DevelopmentalMaturationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoDevelopmentalMaturation: ] ;
+}
+
+<DevelopmentalMaturation> @<BiologicalProcess> AND EXTRA a {
+  a @<DevelopmentalMaturationClass> {1};
+  results_in_maturation_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "a developmental maturation GO biological process or child"
+
+<GrowthClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoGrowth: ] ;
+}
+
+<Growth> @<BiologicalProcess> AND EXTRA a {
+  a @<GrowthClass> {1};
+  results_in_growth_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "a growth GO biological process or child"
+
+<LocalizationClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoLocalization: ] ;
+}
+
+<Localization> @<BiologicalProcess> AND EXTRA a {
+  a @<LocalizationClass> {1};
+  transports_or_maintains_localization_of: ( @<AnatomicalEntity> OR @<ChemicalEntity> OR @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
+  has_target_end_location: @<AnatomicalEntity> {0,1};
+  has_target_start_location: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "a localization GO biological process or child"
+
+<LocomotionClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoLocomotion: ] ;
+}
+
+<Locomotion> @<BiologicalProcess> AND EXTRA a {
+  a @<LocomotionClass> {1};
+  results_in_movement_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "a locomotion GO biological process or child"
+
+<MetabolicProcessClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoMetabolicProcess: ] ;
+}
+
+<MetabolicProcess> @<BiologicalProcess> AND EXTRA a {
+  a @<MetabolicProcessClass> {1};
+  has_primary_input: @<ChemicalEntity> *;
+  has_primary_output: @<ChemicalEntity> *;
+} // rdfs:comment "a metabolic process GO biological process or child"
+
+<ProteinContainingComplexRemodelingClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoProteinContainingComplexRemodeling: ] ;
+}
+
+<ProteinContainingComplexRemodeling> @<BiologicalProcess> AND EXTRA a {
+  a @<ProteinContainingComplexRemodelingClass> {1};
+  results_in_remodeling_of: @<ProteinContainingComplex> {0,1};
+} // rdfs:comment "a protein containing complex remodeling GO biological process or child"
+
+<PatternSpecificationProcessClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoPatternSpecificationProcess: ] ;
+}
+
+<PatternSpecificationProcess> @<BiologicalProcess> AND EXTRA a {
+  a @<PatternSpecificationProcessClass> {1};
+  results_in_specification_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment "a pattern specification process GO biological process or child"
+
+<TransportClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+	rdfs:subClassOf [ GoTransport: ] ;
+}
+
+<Transport> @<BiologicalProcess> AND EXTRA a {
+  a @<TransportClass> {1};
+  has_primary_input: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> ) *;
+  has_primary_output: ( @<ChemicalEntity> OR @<AnatomicalEntity> OR @<ProteinContainingComplex> ) *;
+} // rdfs:comment "a transport GO biological process or child"
+
+<MolecularFunctionClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoMolecularFunction: ] ;
+}
+
+<NegatedMolecularFunctionClass> BNode @<OwlClass> AND {
+  owl:complementOf @<MolecularFunctionClass>
+}
+
+<MolecularEventClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoMolecularEvent: ] ;
+}
+
+<NegatedMolecularEventClass> BNode @<OwlClass> AND {
+  owl:complementOf @<MolecularEventClass>
+}
+
+<MolecularEvent> @<GoCamEntity> AND EXTRA a {
+  a ( @<MolecularEventClass> OR @<NegatedMolecularEventClass> ) {1};
+}
+
+<MolecularFunction> @<GoCamEntity> AND EXTRA a {
+  a ( @<MolecularFunctionClass> OR @<NegatedMolecularFunctionClass> ) {1};
+  enabled_by:  ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) {0,1};
+  part_of: @<BiologicalProcess> * // <exclude_from_extensions> true;
+  has_part: @<MolecularFunction> *;
+  occurs_in: @<AnatomicalEntity> {0,1} // <exclude_from_extensions> true;
+  has_output: ( @<ChemicalEntity> OR @<ProteinContainingComplex> ) *;
+  has_input: ( @<ChemicalEntity> OR @<ProteinContainingComplex> ) *;
+  directly_provides_input_for: ( @<MolecularFunction> OR @<MolecularEvent> ) * // <exclude_from_extensions> true;
+  regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) * // <exclude_from_extensions> true;
+  negatively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  positively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  directly_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  directly_negatively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  directly_positively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  indirectly_regulates: ( @<MolecularFunction> OR @<MolecularEvent>) *;
+  indirectly_positively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  indirectly_negatively_regulates: ( @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  constitutively_upstream_of: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
+  removes_input_for: ( @<MolecularFunction> OR @<MolecularEvent> ) *;
+  causally_upstream_of_or_within: ( @<MolecularFunction> OR @<MolecularEvent> OR @<BiologicalProcess> ) *  // <exclude_from_extensions> true;
+  causally_upstream_of_or_within_negative_effect: @<BiologicalProcess> *  // <exclude_from_extensions> true;
+  causally_upstream_of_or_within_positive_effect: @<BiologicalProcess> *  // <exclude_from_extensions> true;
+  causally_upstream_of: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  causally_upstream_of_negative_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  causally_upstream_of_positive_effect: ( @<BiologicalProcess> OR @<MolecularFunction> OR @<MolecularEvent> ) *  // <exclude_from_extensions> true;
+  happens_during: ( @<BiologicalPhase> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
+} // rdfs:comment  "A molecular function"
+
+<TransporterActivityClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoTransporterActivity: ];
+}
+
+<TransporterActivity> @<MolecularFunction> AND EXTRA a {
+  a @<TransporterActivityClass> {1};
+  transports_or_maintains_localization_of: ( @<ChemicalEntity> OR @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) *;
+  has_target_end_location: @<CellularComponent> *;
+  has_target_start_location: @<CellularComponent> *;
+} // rdfs:comment "a transporter activity GO molecular function or child"
+
+<BiologicalPhaseClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoBiologicalPhase: ];
+}
+
+<BiologicalPhase> @<GoCamEntity> AND EXTRA a {
+  a @<BiologicalPhaseClass>;
+} // rdfs:comment  "a biological phase"
+
+<LifeCycleStageClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoLifeCycleStage: ];
+}
+
+<LifeCycleStage> @<GoCamEntity> AND EXTRA a {
+  a @<LifeCycleStageClass>;
+} // rdfs:comment  "a lifecycle stage"
+
+<PlantStructureDevelopmentStageClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoPlantStructureDevelopmentStage: ];
+}
+
+<PlantStructureDevelopmentStage> @<GoCamEntity> AND EXTRA a {
+  a @<PlantStructureDevelopmentStageClass>;
+} // rdfs:comment  "a plant structure developmental stage"
+
+<AnatomicalEntityClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoAnatomicalEntity: ];
+}
+
+<NegatedAnatomicalEntityClass> BNode @<OwlClass> AND {
+  owl:complementOf @<AnatomicalEntityClass>
+}
+
+<AnatomicalEntity> @<GoCamEntity> AND EXTRA a {
+  a ( @<AnatomicalEntityClass> OR @<NegatedAnatomicalEntityClass> );
+  part_of: @<AnatomicalEntity> {0,1};
+  location_of: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex> ) {0,1};
+} // rdfs:comment  "an anatomical entity"
+
+<NativeCellClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoNativeCell: ];
+}
+
+<NativeCell> @<GoCamEntity> AND EXTRA a {
+  a @<NativeCellClass> {1};
+  part_of: @<AnatomicalEntity> {0,1};
+} // rdfs:comment  "a native cell or child"
+
+<CellularComponentClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoCellularComponent: ];
+}
+
+<NegatedCellularComponentClass> BNode @<OwlClass> AND {
+  owl:complementOf @<CellularComponentClass>
+}
+
+<RootCellularComponent> IRI @<GoCamEntity> AND EXTRA a {
+  a [ GoCellularComponent: ];
+}
+
+#<CellularComponent> @<AnatomicalEntity> AND EXTRA a { # If we want to intersect with anatomical entity, then GO cellular_component needs to subclass anatomical entity in go-lego
+<CellularComponent> @<GoCamEntity> AND EXTRA a {
+  a ( @<CellularComponentClass> OR @<NegatedCellularComponentClass> ) {1};
+  part_of: @<AnatomicalEntity> {0,1};
+  adjacent_to: @<AnatomicalEntity> *;
+  overlaps: @<AnatomicalEntity> *;
+  existence_overlaps: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
+  existence_starts_and_ends_during: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
+} // rdfs:comment  "a cellular component"
+
+<ProteinContainingComplex> @<GoCamEntity> AND EXTRA a {
+  a @<ProteinContainingComplexClass>;
+  located_in: @<AnatomicalEntity> {0,1};
+  is_active_in: @<AnatomicalEntity> OR @<RootCellularComponent> {0,1};
+  has_part: ( @<InformationBiomacromolecule> OR @<ProteinContainingComplex>) *;
+  existence_overlaps: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
+  existence_starts_and_ends_during: ( @<BiologicalProcess> OR @<LifeCycleStage> OR @<PlantStructureDevelopmentStage> ) *;
+} // rdfs:comment  "a protein complex"
+
+<ProteinContainingComplexClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoProteinContainingComplex: ];
+}
+
+<ChemicalEntity> @<GoCamEntity> AND EXTRA a {
+  a @<ChemicalEntityClass> +;
+}// rdfs:comment  "a molecular entity (a gene product, chemical, or complex typically)"
+
+<ChemicalEntityClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf  {
+  rdfs:subClassOf [ GoChemicalEntity: ];
+}
+
+<ProteinClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoProtein: ];
+}
+<Protein> @<ChemicalEntity> AND EXTRA a {
+  a @<ProteinClass> ;
+  located_in: @<AnatomicalEntity> {0,1};
+  is_active_in: @<AnatomicalEntity> OR @<RootCellularComponent> {0,1};
+  part_of: @<ProteinContainingComplex> {0,1};
+  contributes_to: @<MolecularFunction> {0,1};
+}// rdfs:comment  "a protein"
+
+
+<InformationBiomacromoleculeClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoInformationBiomacromolecule: ];
+}
+<InformationBiomacromolecule> @<ChemicalEntity> AND EXTRA a {
+   a @<InformationBiomacromoleculeClass> +;
+   located_in: @<AnatomicalEntity> {0,1};
+   is_active_in: @<AnatomicalEntity> OR @<RootCellularComponent> {0,1};
+   part_of: @<ProteinContainingComplex> {0,1};
+   contributes_to: @<MolecularFunction> {0,1};
+}// rdfs:comment  "an information biomacromolecule - e.g. a protein or RNA product"
+
+<EvidenceClass> IRI @<OwlClass> AND EXTRA rdfs:subClassOf {
+  rdfs:subClassOf [ GoEvidence: ] ;
+}
+
+<Evidence> @<GoCamEntity> AND EXTRA a  {
+  a @<EvidenceClass> {1};
+  source: xsd:string {1};
+  with: xsd:string {0,1}
+}// rdfs:comment  "A kind of evidence"
+
+<AnnotatedEdge> BNode @<ProvenanceAnnotated> AND {
+  a [ owl:Axiom ] ;
+  owl:annotatedSource @<GoCamEntity> ;
+  owl:annotatedProperty IRI ;
+  owl:annotatedTarget @<GoCamEntity> ;
+  evidence: @<Evidence> *
+}
+
+#<BL_UNTYPED> {
+#   bl:category . {0}
+#   // rdfs:comment  "has no type tag inside" ;
+#} // rdfs:comment  "has no type tag full rule"
+
+#<BL_TYPED> {
+#   bl:category . {1}
+#} // rdfs:comment  "has exactly one type tag"
+
+#<BL_MULTI_TYPED> {
+#   bl:category . {2,}
+#} // rdfs:comment  "has multiple type tags"
\ No newline at end of file
diff --git a/shapes/json/look_table.json b/shapes/json/look_table.json
new file mode 100644
index 0000000..c4ed2a7
--- /dev/null
+++ b/shapes/json/look_table.json
@@ -0,0 +1,737 @@
+[
+  {
+    "id": "CHEBI:33695",
+    "label": "information biomacromolecule",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "CHEBI:36080",
+    "label": "protein",
+    "definition": "A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome.",
+    "comment": "",
+    "synonyms": [
+      "proteins"
+    ]
+  },
+  {
+    "id": "GO:0032991",
+    "label": "protein-containing complex",
+    "definition": "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.",
+    "comment": "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole.",
+    "synonyms": [
+      "macromolecular complex",
+      "macromolecule complex",
+      "protein containing complex"
+    ]
+  },
+  {
+    "id": "GO:0005575",
+    "label": "cellular_component",
+    "definition": "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).",
+    "comment": "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.",
+    "synonyms": [
+      "cell or subcellular entity",
+      "cellular component"
+    ]
+  },
+  {
+    "id": "GO:0008150",
+    "label": "biological_process",
+    "definition": "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.",
+    "comment": "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.",
+    "synonyms": [
+      "biological process",
+      "physiological process"
+    ]
+  },
+  {
+    "id": "GO:0048856",
+    "label": "anatomical structure development",
+    "definition": "The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.",
+    "comment": "",
+    "synonyms": [
+      "development of an anatomical structure"
+    ]
+  },
+  {
+    "id": "GO:0048646",
+    "label": "anatomical structure formation involved in morphogenesis",
+    "definition": "The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.",
+    "comment": "Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense.",
+    "synonyms": [
+      "formation of an anatomical structure involved in morphogenesis"
+    ]
+  },
+  {
+    "id": "GO:0009653",
+    "label": "anatomical structure morphogenesis",
+    "definition": "The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.",
+    "comment": "",
+    "synonyms": [
+      "anatomical structure organization",
+      "morphogenesis"
+    ]
+  },
+  {
+    "id": "GO:0030154",
+    "label": "cell differentiation",
+    "definition": "The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0051301",
+    "label": "cell division",
+    "definition": "The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.",
+    "comment": "Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0045165",
+    "label": "cell fate commitment",
+    "definition": "The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.",
+    "comment": "Note that this term was 'cell fate determination' but the term name was changed to better match its existing definition and the child term 'cell fate determination; GO:0001709' was also created.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0001709",
+    "label": "cell fate determination",
+    "definition": "A process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0001708",
+    "label": "cell fate specification",
+    "definition": "The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0022607",
+    "label": "cellular component assembly",
+    "definition": "The aggregation, arrangement and bonding together of a cellular component.",
+    "comment": "",
+    "synonyms": [
+      "cell structure assembly",
+      "cellular component assembly at cellular level"
+    ]
+  },
+  {
+    "id": "GO:0022411",
+    "label": "cellular component disassembly",
+    "definition": "A cellular process that results in the breakdown of a cellular component.",
+    "comment": "",
+    "synonyms": [
+      "cell structure disassembly",
+      "cellular component disassembly at cellular level"
+    ]
+  },
+  {
+    "id": "GO:0016043",
+    "label": "cellular component organization",
+    "definition": "A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.",
+    "comment": "",
+    "synonyms": [
+      "cell organisation",
+      "cellular component organisation at cellular level",
+      "cellular component organisation in other organism",
+      "cellular component organization at cellular level",
+      "cellular component organization in other organism"
+    ]
+  },
+  {
+    "id": "GO:0021700",
+    "label": "developmental maturation",
+    "definition": "A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure, cell or cellular component to attain its fully functional state.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0040007",
+    "label": "growth",
+    "definition": "The increase in size or mass of an entire organism, a part of an organism or a cell.",
+    "comment": "See also the biological process term 'cell growth ; GO:0016049'.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0051179",
+    "label": "localization",
+    "definition": "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.",
+    "comment": "",
+    "synonyms": [
+      "establishment and maintenance of localization",
+      "establishment and maintenance of position",
+      "localisation"
+    ]
+  },
+  {
+    "id": "GO:0040011",
+    "label": "locomotion",
+    "definition": "Self-propelled movement of a cell or organism from one location to another.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0006928",
+    "label": "obsolete movement of cell or subcellular component",
+    "definition": "OBSOLETE. The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.",
+    "comment": "This term was obsoleted because it mixes cellular and subcellular processes.",
+    "synonyms": [
+      "cellular component motion",
+      "cellular component movement"
+    ]
+  },
+  {
+    "id": "GO:0034367",
+    "label": "protein-containing complex remodeling",
+    "definition": "The acquisition, loss, or modification of macromolecules within a complex, resulting in the alteration of an existing complex.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0007389",
+    "label": "pattern specification process",
+    "definition": "Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0003674",
+    "label": "molecular_function",
+    "definition": "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.",
+    "comment": "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.",
+    "synonyms": [
+      "molecular function"
+    ]
+  },
+  {
+    "id": "GO:0005215",
+    "label": "transporter activity",
+    "definition": "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.",
+    "comment": "Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "CHEBI:24431",
+    "label": "chemical entity",
+    "definition": "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.",
+    "comment": "",
+    "synonyms": [
+      "chemical entity"
+    ]
+  },
+  {
+    "id": "ECO:0000000",
+    "label": "evidence",
+    "definition": "A type of information that is used to support an assertion.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "CARO:0000000",
+    "label": "anatomical entity",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "CL:0000003",
+    "label": "native cell",
+    "definition": "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment).",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "NCBITaxon:1",
+    "label": "root",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "GO:0044848",
+    "label": "biological phase",
+    "definition": "A distinct period or stage in a biological process or cycle.",
+    "comment": "Note that phases are is_a disjoint from other biological processes. happens_during relationships can operate between phases and other biological processes e.g. DNA replication happens_during S phase.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "UBERON:0000105",
+    "label": "life cycle stage",
+    "definition": "A spatiotemporal region encompassing some part of the life cycle of an organism.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "PO:0009012",
+    "label": "plant structure development stage",
+    "definition": "A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes.",
+    "comment": "",
+    "synonyms": [
+      "etapa de desarrollo de estructura vegetal (Spanish, exact)",
+      "plant growth and development stage (exact)"
+    ]
+  },
+  {
+    "id": "BFO:0000050",
+    "label": "part of",
+    "definition": "a core relation that holds between a part and its whole",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "BFO:0000051",
+    "label": "has part",
+    "definition": "a core relation that holds between a whole and its part",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "BFO:0000066",
+    "label": "occurs in",
+    "definition": "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s\u2019 where & b spatially_projects_onto s at t& c is occupies_spatial_region s\u2019 at t& s is a proper_continuant_part_of s\u2019 at t",
+    "comment": "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002220",
+    "label": "adjacent to",
+    "definition": "x adjacent to y if and only if x and y share a boundary.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002131",
+    "label": "overlaps",
+    "definition": "x overlaps y if and only if there exists some z such that x has part z and z part of y",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002490",
+    "label": "existence overlaps",
+    "definition": "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (\u03b1(x) >= \u03b1(y) & \u03b1(x) <= \u03c9(y)) OR (\u03c9(x) <= \u03c9(y) & \u03c9(x) >= \u03b1(y))",
+    "comment": "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002491",
+    "label": "existence starts and ends during",
+    "definition": "x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff \u03b1(x) >= \u03b1(y) & \u03b1(x) <= \u03c9(y) & \u03c9(x) <= \u03c9(y) & \u03c9(x) >= \u03b1(y)",
+    "comment": "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.",
+    "synonyms": [
+      "exists during"
+    ]
+  },
+  {
+    "id": "RO:0002333",
+    "label": "enabled by",
+    "definition": "inverse of enables",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002326",
+    "label": "contributes to",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002233",
+    "label": "has input",
+    "definition": "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002234",
+    "label": "has output",
+    "definition": "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002339",
+    "label": "has target end location",
+    "definition": "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002338",
+    "label": "has target start location",
+    "definition": "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002313",
+    "label": "transports or maintains localization of",
+    "definition": "Holds between p and c when p is a localization process (localization covers maintenance of localization as well as its establishment)  and the outcome of this process is to regulate the localization of c.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002413",
+    "label": "directly provides input for",
+    "definition": "p provides input for q iff p is immediately causally upstream of q, and there exists some c such that p has_output c and q has_input c.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002629",
+    "label": "directly positively regulates",
+    "definition": "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0001025",
+    "label": "located in",
+    "definition": "a relation between two independent continuants, the target and the location, in which the target is entirely within the location",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0001015",
+    "label": "location of",
+    "definition": "a relation between two independent continuants, the location and the target, in which the target is entirely within the location",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002432",
+    "label": "is active in",
+    "definition": "c executes activity in d if and only if c enables p and p occurs_in d.  Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.",
+    "comment": "",
+    "synonyms": [
+      "enables activity in"
+    ]
+  },
+  {
+    "id": "RO:0002092",
+    "label": "happens during",
+    "definition": "",
+    "comment": "X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002211",
+    "label": "regulates",
+    "definition": "process(P1) regulates process(P2) iff:\u00a0P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002212",
+    "label": "negatively regulates",
+    "definition": "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002213",
+    "label": "positively regulates",
+    "definition": "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002578",
+    "label": "directly regulates",
+    "definition": "p directly regulates q iff p is immediately causally upstream of q and p regulates q.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002630",
+    "label": "directly negatively regulates",
+    "definition": "p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002406",
+    "label": "directly activates",
+    "definition": "p directly activates q if and only if p is immediately upstream of q and p is the realization of a function to increase the rate or activity of q",
+    "comment": "This term was obsoleted because it has the same meaning as 'directly positively regulates'.",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002418",
+    "label": "causally upstream of or within",
+    "definition": "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0004046",
+    "label": "causally upstream of or within, negative effect",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0004047",
+    "label": "causally upstream of or within, positive effect",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002411",
+    "label": "causally upstream of",
+    "definition": "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002305",
+    "label": "causally upstream of, negative effect",
+    "definition": "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.",
+    "comment": "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002304",
+    "label": "causally upstream of, positive effect",
+    "definition": "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.",
+    "comment": "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0012003",
+    "label": "acts on population of",
+    "definition": "p acts on population of c iff c' is a collection, has members of type c, and p has participant c",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002296",
+    "label": "results in development of",
+    "definition": "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002297",
+    "label": "results in formation of",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002298",
+    "label": "results in morphogenesis of",
+    "definition": "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002315",
+    "label": "results in acquisition of features of",
+    "definition": "The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002348",
+    "label": "results in commitment to",
+    "definition": "p 'results in commitment to' c if and only if p is a developmental process and c is a cell and p results in the state of c changing such that is can only develop into a single cell type.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002349",
+    "label": "results in determination of",
+    "definition": "p 'results in determination of' c if and only if p is a developmental process and c is a cell and p results in the state of c changing to be determined. Once a cell becomes determined, it becomes committed to differentiate down a particular pathway regardless of its environment.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002356",
+    "label": "results in specification of",
+    "definition": "The relationship linking a cell and its participation in a process that results in the fate of the cell being specified. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. ",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002588",
+    "label": "results in assembly of",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002590",
+    "label": "results in disassembly of",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002592",
+    "label": "results in organization of",
+    "definition": "p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002299",
+    "label": "results in maturation of",
+    "definition": "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002343",
+    "label": "results in growth of",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002565",
+    "label": "results in movement of",
+    "definition": "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  },
+  {
+    "id": "RO:0002591",
+    "label": "results in remodeling of",
+    "definition": "",
+    "comment": "",
+    "synonyms": [
+      ""
+    ]
+  }
+]
\ No newline at end of file
diff --git a/shapes/json/shex_dump.json b/shapes/json/shex_dump.json
new file mode 100644
index 0000000..2c06fff
--- /dev/null
+++ b/shapes/json/shex_dump.json
@@ -0,0 +1,1000 @@
+{
+  "goshapes": [
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "GO:0008150"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "BFO:0000050",
+      "exclude_from_extensions": [
+        true
+      ]
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "CHEBI:24431",
+        "CARO:0000000",
+        "GO:0032991",
+        "NCBITaxon:1"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002233"
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "CHEBI:24431",
+        "CARO:0000000",
+        "GO:0032991"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002234"
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "CARO:0000000"
+      ],
+      "is_multivalued": false,
+      "is_required": false,
+      "context": "",
+      "predicate": "BFO:0000066",
+      "exclude_from_extensions": [
+        true
+      ]
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "CHEBI:33695",
+        "GO:0032991"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002313"
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "CARO:0000000"
+      ],
+      "is_multivalued": false,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002339"
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "CARO:0000000"
+      ],
+      "is_multivalued": false,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002338"
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "GO:0008150",
+        "GO:0003674",
+        "http://purl.obolibrary.org/obo/go/shapes/MolecularEvent"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002411",
+      "exclude_from_extensions": [
+        true
+      ]
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "GO:0008150",
+        "GO:0003674",
+        "http://purl.obolibrary.org/obo/go/shapes/MolecularEvent"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002305",
+      "exclude_from_extensions": [
+        true
+      ]
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "GO:0008150",
+        "GO:0003674",
+        "http://purl.obolibrary.org/obo/go/shapes/MolecularEvent"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002304",
+      "exclude_from_extensions": [
+        true
+      ]
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
+        "GO:0008150"
+      ],
+      "is_multivalued": true,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002211",
+      "exclude_from_extensions": [
+        true
+      ]
+    },
+    {
+      "subject": "GO:0008150",
+      "object": [
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+      ],
+      "is_multivalued": false,
+      "is_required": false,
+      "context": "",
+      "predicate": "RO:0002326"
+    }
+  ],
+  "@type": "AssociationCollection"
+}
\ No newline at end of file
diff --git a/shapes/json/shex_full.json b/shapes/json/shex_full.json
new file mode 100644
index 0000000..ea7149c
--- /dev/null
+++ b/shapes/json/shex_full.json
@@ -0,0 +1,4277 @@
+{
+  "type": "Schema",
+  "shapes": [
+    {
+      "type": "Shape",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/GoCamModel",
+      "expression": {
+        "type": "EachOf",
+        "expressions": [
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "values": [
+                "http://www.w3.org/2002/07/owl#Ontology"
+              ]
+            },
+            "min": 1,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/elements/1.1/contributor",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/elements/1.1/date",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/terms/created",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/terms/dateAccepted",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/pav/providedBy",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://geneontology.org/lego/modelstate",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://geneontology.org/lego/templatestate",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "https://w3id.org/biolink/vocab/in_taxon",
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/elements/1.1/title",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2002/07/owl#imports",
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.geneontology.org/formats/oboInOwl#id",
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2002/07/owl#versionIRI",
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/ns/prov#wasDerivedFrom",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "nodeKind": "iri"
+            },
+            "min": 0,
+            "max": 1
+          }
+        ]
+      }
+    },
+    {
+      "type": "Shape",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/ProvenanceAnnotated",
+      "expression": {
+        "type": "EachOf",
+        "expressions": [
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/elements/1.1/contributor",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/elements/1.1/date",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 1,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/terms/created",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/dc/terms/dateAccepted",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": 1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://purl.org/pav/providedBy",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": -1
+          },
+          {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2004/02/skos/core#note",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "datatype": "http://www.w3.org/2001/XMLSchema#string"
+            },
+            "min": 0,
+            "max": -1
+          }
+        ]
+      }
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/GoCamEntity",
+      "shapeExprs": [
+        {
+          "type": "ShapeAnd",
+          "shapeExprs": [
+            {
+              "type": "NodeConstraint",
+              "nodeKind": "iri"
+            },
+            "http://purl.obolibrary.org/obo/go/shapes/ProvenanceAnnotated"
+          ]
+        },
+        {
+          "type": "Shape",
+          "extra": [
+            "http://www.w3.org/1999/02/22-rdf-syntax-ns#type"
+          ],
+          "expression": {
+            "type": "EachOf",
+            "expressions": [
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+                "valueExpr": {
+                  "type": "NodeConstraint",
+                  "values": [
+                    "http://www.w3.org/2002/07/owl#NamedIndividual"
+                  ]
+                },
+                "min": 0,
+                "max": -1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "Every entity we care about is a named individual"
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.geneontology.org/formats/oboInOwl#hasDbXref",
+                "min": 0,
+                "max": -1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "mappings for the entity. Value is typically a CURIE string. Currently this is only used for Reactome-derived models."
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2000/01/rdf-schema#label",
+                "min": 0,
+                "max": 1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "the name of the entity. Currently this is only used for Reactome-derived models."
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2004/02/skos/core#exactMatch",
+                "min": 0,
+                "max": -1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://geneontology.org/lego/hint/layout/x",
+                "min": 0,
+                "max": 1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "X coordinate for node. This is used for caching layouts in the Noctua Graph Editor."
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://geneontology.org/lego/hint/layout/y",
+                "min": 0,
+                "max": 1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "Y coordinate for node. This is used for caching layouts in the Noctua Graph Editor."
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2004/02/skos/core#narrower",
+                "min": 0,
+                "max": -1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "This entity (e.g. a node representing a pathway) represents a narrower (in any sense) concept then the target node. "
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2004/02/skos/core#broader",
+                "min": 0,
+                "max": -1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+                    "object": {
+                      "value": "This entity (e.g. a node representing a pathway) represents a broader (in any sense) concept then the target node. "
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          "annotations": [
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "Every entity we care about is a named individual"
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "mappings for the entity. Value is typically a CURIE string. Currently this is only used for Reactome-derived models."
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "the name of the entity. Currently this is only used for Reactome-derived models."
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "X coordinate for node. This is used for caching layouts in the Noctua Graph Editor."
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "Y coordinate for node. This is used for caching layouts in the Noctua Graph Editor."
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "This entity (e.g. a node representing a pathway) represents a narrower (in any sense) concept then the target node. "
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "This entity (e.g. a node representing a pathway) represents a broader (in any sense) concept then the target node. "
+              }
+            },
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "Default allowable metadata for GO-CAM entities"
+              }
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "type": "Shape",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/OwlClass",
+      "expression": {
+        "type": "TripleConstraint",
+        "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+        "valueExpr": {
+          "type": "NodeConstraint",
+          "values": [
+            "http://www.w3.org/2002/07/owl#Class"
+          ]
+        },
+        "min": 1,
+        "max": 1
+      }
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/BiologicalProcessClass",
+      "shapeExprs": [
+        {
+          "type": "ShapeAnd",
+          "shapeExprs": [
+            {
+              "type": "NodeConstraint",
+              "nodeKind": "iri"
+            },
+            "http://purl.obolibrary.org/obo/go/shapes/OwlClass"
+          ]
+        },
+        {
+          "type": "Shape",
+          "extra": [
+            "http://www.w3.org/2000/01/rdf-schema#subClassOf"
+          ],
+          "expression": {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2000/01/rdf-schema#subClassOf",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "values": [
+                "http://purl.obolibrary.org/obo/GO_0008150"
+              ]
+            }
+          }
+        }
+      ]
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/NegatedBiologicalProcessClass",
+      "shapeExprs": [
+        {
+          "type": "ShapeAnd",
+          "shapeExprs": [
+            {
+              "type": "NodeConstraint",
+              "nodeKind": "bnode"
+            },
+            "http://purl.obolibrary.org/obo/go/shapes/OwlClass"
+          ]
+        },
+        {
+          "type": "Shape",
+          "expression": {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2002/07/owl#complementOf",
+            "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/BiologicalProcessClass"
+          }
+        }
+      ]
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/OrganismClass",
+      "shapeExprs": [
+        {
+          "type": "ShapeAnd",
+          "shapeExprs": [
+            {
+              "type": "NodeConstraint",
+              "nodeKind": "iri"
+            },
+            "http://purl.obolibrary.org/obo/go/shapes/OwlClass"
+          ]
+        },
+        {
+          "type": "Shape",
+          "extra": [
+            "http://www.w3.org/2000/01/rdf-schema#subClassOf"
+          ],
+          "expression": {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/2000/01/rdf-schema#subClassOf",
+            "valueExpr": {
+              "type": "NodeConstraint",
+              "values": [
+                "http://purl.obolibrary.org/obo/NCBITaxon_1"
+              ]
+            }
+          }
+        }
+      ]
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/Organism",
+      "shapeExprs": [
+        "http://purl.obolibrary.org/obo/go/shapes/GoCamEntity",
+        {
+          "type": "Shape",
+          "extra": [
+            "http://www.w3.org/1999/02/22-rdf-syntax-ns#type"
+          ],
+          "expression": {
+            "type": "TripleConstraint",
+            "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+            "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/OrganismClass"
+          },
+          "annotations": [
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "A member of a class of organisms defined in the NCBI taxonomy"
+              }
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/BiologicalProcess",
+      "shapeExprs": [
+        "http://purl.obolibrary.org/obo/go/shapes/GoCamEntity",
+        {
+          "type": "Shape",
+          "extra": [
+            "http://www.w3.org/1999/02/22-rdf-syntax-ns#type"
+          ],
+          "expression": {
+            "type": "EachOf",
+            "expressions": [
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+                "valueExpr": {
+                  "type": "ShapeOr",
+                  "shapeExprs": [
+                    "http://purl.obolibrary.org/obo/go/shapes/BiologicalProcessClass",
+                    "http://purl.obolibrary.org/obo/go/shapes/NegatedBiologicalProcessClass"
+                  ]
+                },
+                "min": 1,
+                "max": 1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/BFO_0000050",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/BiologicalProcess",
+                "min": 0,
+                "max": -1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://purl.obolibrary.org/obo/go/shapes/exclude_from_extensions",
+                    "object": {
+                      "value": "true",
+                      "type": "http://www.w3.org/2001/XMLSchema#boolean"
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/RO_0002233",
+                "valueExpr": {
+                  "type": "ShapeOr",
+                  "shapeExprs": [
+                    "http://purl.obolibrary.org/obo/go/shapes/ChemicalEntity",
+                    "http://purl.obolibrary.org/obo/go/shapes/AnatomicalEntity",
+                    "http://purl.obolibrary.org/obo/go/shapes/ProteinContainingComplex",
+                    "http://purl.obolibrary.org/obo/go/shapes/Organism"
+                  ]
+                },
+                "min": 0,
+                "max": -1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/RO_0002234",
+                "valueExpr": {
+                  "type": "ShapeOr",
+                  "shapeExprs": [
+                    "http://purl.obolibrary.org/obo/go/shapes/ChemicalEntity",
+                    "http://purl.obolibrary.org/obo/go/shapes/AnatomicalEntity",
+                    "http://purl.obolibrary.org/obo/go/shapes/ProteinContainingComplex"
+                  ]
+                },
+                "min": 0,
+                "max": -1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/BFO_0000066",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/AnatomicalEntity",
+                "min": 0,
+                "max": 1,
+                "annotations": [
+                  {
+                    "type": "Annotation",
+                    "predicate": "http://purl.obolibrary.org/obo/go/shapes/exclude_from_extensions",
+                    "object": {
+                      "value": "true",
+                      "type": "http://www.w3.org/2001/XMLSchema#boolean"
+                    }
+                  }
+                ]
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/RO_0002313",
+                "valueExpr": {
+                  "type": "ShapeOr",
+                  "shapeExprs": [
+                    "http://purl.obolibrary.org/obo/go/shapes/InformationBiomacromolecule",
+                    "http://purl.obolibrary.org/obo/go/shapes/ProteinContainingComplex"
+                  ]
+                },
+                "min": 0,
+                "max": -1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/RO_0002339",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/AnatomicalEntity",
+                "min": 0,
+                "max": 1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/RO_0002338",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/AnatomicalEntity",
+                "min": 0,
+                "max": 1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.obolibrary.org/obo/RO_0002411",
+                "valueExpr": {
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+      ]
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/Evidence",
+      "shapeExprs": [
+        "http://purl.obolibrary.org/obo/go/shapes/GoCamEntity",
+        {
+          "type": "Shape",
+          "extra": [
+            "http://www.w3.org/1999/02/22-rdf-syntax-ns#type"
+          ],
+          "expression": {
+            "type": "EachOf",
+            "expressions": [
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/EvidenceClass",
+                "min": 1,
+                "max": 1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://purl.org/dc/elements/1.1/source",
+                "valueExpr": {
+                  "type": "NodeConstraint",
+                  "datatype": "http://www.w3.org/2001/XMLSchema#string"
+                },
+                "min": 1,
+                "max": 1
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://geneontology.org/lego/evidence-with",
+                "valueExpr": {
+                  "type": "NodeConstraint",
+                  "datatype": "http://www.w3.org/2001/XMLSchema#string"
+                },
+                "min": 0,
+                "max": 1
+              }
+            ]
+          },
+          "annotations": [
+            {
+              "type": "Annotation",
+              "predicate": "http://www.w3.org/2000/01/rdf-schema#comment",
+              "object": {
+                "value": "A kind of evidence"
+              }
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "type": "ShapeAnd",
+      "id": "http://purl.obolibrary.org/obo/go/shapes/AnnotatedEdge",
+      "shapeExprs": [
+        {
+          "type": "ShapeAnd",
+          "shapeExprs": [
+            {
+              "type": "NodeConstraint",
+              "nodeKind": "bnode"
+            },
+            "http://purl.obolibrary.org/obo/go/shapes/ProvenanceAnnotated"
+          ]
+        },
+        {
+          "type": "Shape",
+          "expression": {
+            "type": "EachOf",
+            "expressions": [
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
+                "valueExpr": {
+                  "type": "NodeConstraint",
+                  "values": [
+                    "http://www.w3.org/2002/07/owl#Axiom"
+                  ]
+                }
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2002/07/owl#annotatedSource",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/GoCamEntity"
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2002/07/owl#annotatedProperty",
+                "valueExpr": {
+                  "type": "NodeConstraint",
+                  "nodeKind": "iri"
+                }
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://www.w3.org/2002/07/owl#annotatedTarget",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/GoCamEntity"
+              },
+              {
+                "type": "TripleConstraint",
+                "predicate": "http://geneontology.org/lego/evidence",
+                "valueExpr": "http://purl.obolibrary.org/obo/go/shapes/Evidence",
+                "min": 0,
+                "max": -1
+              }
+            ]
+          }
+        }
+      ]
+    }
+  ]
+}
\ No newline at end of file