From f017aae2f04fd4a5cbbe2ac98c24c1633e8ec5e1 Mon Sep 17 00:00:00 2001 From: Jim Balhoff Date: Wed, 6 Mar 2024 11:26:54 -0500 Subject: [PATCH] Fix obsolete GO terms in test models. (#308) --- test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl | 2 +- test_ttl/go_cams/hold/Test009b-has_output_complex.ttl | 2 +- .../go_cams/should_fail/Test001-bad-meta-no-contributor.ttl | 6 +++--- .../go_cams/should_fail/Test002-enabled_by_GO_complex.ttl | 6 +++--- .../should_fail/Test003-occurs_in_MolecularEntity.ttl | 6 +++--- .../go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl | 6 +++--- .../should_fail/Test005-enabled_by_biological_process.ttl | 6 +++--- .../should_fail/Test006-occurs_in_BiologicalProcess.ttl | 6 +++--- .../should_fail/Test010-has_output-biological_process.ttl | 6 +++--- .../should_fail/Test011-has_output-molecular_function.ttl | 6 +++--- .../should_fail/Test012-has_input-complex_GO_complex.ttl | 6 +++--- .../go_cams/should_fail/Test012b-has_input-GoComplex.ttl | 6 +++--- .../should_fail/Test013-has_input-biological_process.ttl | 6 +++--- .../should_fail/Test014-has_input-molecular_function.ttl | 6 +++--- ...Test015-provides_direct_input_for-Biological_process.ttl | 6 +++--- ...Test016-provides_direct_input_for-cellular_component.ttl | 6 +++--- .../Test017-provides_direct_input_for-MolecularEntity.ttl | 6 +++--- .../Test020-happens_during_BP_not_a_biological_phase.ttl | 6 +++--- .../should_fail/Test021-happens_during_GOcomplex.ttl | 6 +++--- .../go_cams/should_fail/Test021b-happens_during-complex.ttl | 6 +++--- .../Test022-happens_during-molecular_function.ttl | 6 +++--- .../should_fail/Test023-enabled_by_2_MolecularEntity.ttl | 6 +++--- .../should_fail/Test024-part_of_2_biological_process.ttl | 6 +++--- .../should_fail/Test025-occurs_in_2_cellular_component.ttl | 6 +++--- ...028-directly_provides_input_for_2_molecular_function.ttl | 6 +++--- ...9-directly_positively_regulates_2_molecular_function.ttl | 6 +++--- ...-causally_upstream_of_or_within-2-biological_process.ttl | 6 +++--- .../Test000-Correct_and_complete_ActivityUnit_model.ttl | 6 +++--- test_ttl/go_cams/should_pass/Test001-missing_enabled_by.ttl | 6 +++--- ...t018-directly_positively_regulates_MolecularFunction.ttl | 6 +++--- .../should_pass/Test019-happens_during_BiologicalPhase.ttl | 6 +++--- .../should_pass/Test026-has_output_2_MolecularEntity.ttl | 6 +++--- .../should_pass/Test027-has_input_2_MolecularEntity.ttl | 6 +++--- 33 files changed, 95 insertions(+), 95 deletions(-) diff --git a/test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl b/test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl index c2cbf07..885b1cf 100644 --- a/test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl +++ b/test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl @@ -198,7 +198,7 @@ ### http://model.geneontology.org/5d27d1cf00000192/5d27d1cf00000204 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/hold/Test009b-has_output_complex.ttl b/test_ttl/go_cams/hold/Test009b-has_output_complex.ttl index d599b39..b0cecf5 100644 --- a/test_ttl/go_cams/hold/Test009b-has_output_complex.ttl +++ b/test_ttl/go_cams/hold/Test009b-has_output_complex.ttl @@ -163,7 +163,7 @@ ### http://model.geneontology.org/5d27d1cf00000211/5d27d1cf00000223 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test001-bad-meta-no-contributor.ttl b/test_ttl/go_cams/should_fail/Test001-bad-meta-no-contributor.ttl index a8663ba..fbdc0ad 100644 --- a/test_ttl/go_cams/should_fail/Test001-bad-meta-no-contributor.ttl +++ b/test_ttl/go_cams/should_fail/Test001-bad-meta-no-contributor.ttl @@ -166,8 +166,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -338,7 +338,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050 rdf:type owl:NamedIndividual , - ; + ; "148.75"^^xsd:string ; "55"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test002-enabled_by_GO_complex.ttl b/test_ttl/go_cams/should_fail/Test002-enabled_by_GO_complex.ttl index eb62fc3..cd37221 100644 --- a/test_ttl/go_cams/should_fail/Test002-enabled_by_GO_complex.ttl +++ b/test_ttl/go_cams/should_fail/Test002-enabled_by_GO_complex.ttl @@ -176,8 +176,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -367,7 +367,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000056/5d27d1cf00000068 rdf:type owl:NamedIndividual , - ; + ; "447.75"^^xsd:string ; "32.999996185302734"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test003-occurs_in_MolecularEntity.ttl b/test_ttl/go_cams/should_fail/Test003-occurs_in_MolecularEntity.ttl index 4ecf4d1..ff14492 100644 --- a/test_ttl/go_cams/should_fail/Test003-occurs_in_MolecularEntity.ttl +++ b/test_ttl/go_cams/should_fail/Test003-occurs_in_MolecularEntity.ttl @@ -176,8 +176,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -368,7 +368,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000078/5d27d1cf00000090 rdf:type owl:NamedIndividual , - ; + ; "218.75"^^xsd:string ; "21"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl b/test_ttl/go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl index 5c52488..2905768 100644 --- a/test_ttl/go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl +++ b/test_ttl/go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl @@ -171,8 +171,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -367,7 +367,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000097/5d27d1cf00000109 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test005-enabled_by_biological_process.ttl b/test_ttl/go_cams/should_fail/Test005-enabled_by_biological_process.ttl index 140037d..f111771 100644 --- a/test_ttl/go_cams/should_fail/Test005-enabled_by_biological_process.ttl +++ b/test_ttl/go_cams/should_fail/Test005-enabled_by_biological_process.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -355,7 +355,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000116/5d27d1cf00000128 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test006-occurs_in_BiologicalProcess.ttl b/test_ttl/go_cams/should_fail/Test006-occurs_in_BiologicalProcess.ttl index 2d8a340..8d19ad5 100644 --- a/test_ttl/go_cams/should_fail/Test006-occurs_in_BiologicalProcess.ttl +++ b/test_ttl/go_cams/should_fail/Test006-occurs_in_BiologicalProcess.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -368,7 +368,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000135/5d27d1cf00000147 rdf:type owl:NamedIndividual , - ; + ; "468.75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test010-has_output-biological_process.ttl b/test_ttl/go_cams/should_fail/Test010-has_output-biological_process.ttl index cce1afd..fc46c86 100644 --- a/test_ttl/go_cams/should_fail/Test010-has_output-biological_process.ttl +++ b/test_ttl/go_cams/should_fail/Test010-has_output-biological_process.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -346,7 +346,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000231/5d27d1cf00000243 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test011-has_output-molecular_function.ttl b/test_ttl/go_cams/should_fail/Test011-has_output-molecular_function.ttl index 49f5f74..b6ade47 100644 --- a/test_ttl/go_cams/should_fail/Test011-has_output-molecular_function.ttl +++ b/test_ttl/go_cams/should_fail/Test011-has_output-molecular_function.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -346,7 +346,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000250/5d27d1cf00000262 rdf:type owl:NamedIndividual , - ; + ; "359.75"^^xsd:string ; "45"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test012-has_input-complex_GO_complex.ttl b/test_ttl/go_cams/should_fail/Test012-has_input-complex_GO_complex.ttl index 73b03c1..0673524 100644 --- a/test_ttl/go_cams/should_fail/Test012-has_input-complex_GO_complex.ttl +++ b/test_ttl/go_cams/should_fail/Test012-has_input-complex_GO_complex.ttl @@ -169,8 +169,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -345,7 +345,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000269/5d27d1cf00000281 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test012b-has_input-GoComplex.ttl b/test_ttl/go_cams/should_fail/Test012b-has_input-GoComplex.ttl index 74f0ff8..9aebaae 100644 --- a/test_ttl/go_cams/should_fail/Test012b-has_input-GoComplex.ttl +++ b/test_ttl/go_cams/should_fail/Test012b-has_input-GoComplex.ttl @@ -181,8 +181,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -252,7 +252,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000288/5d27d1cf00000293 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test013-has_input-biological_process.ttl b/test_ttl/go_cams/should_fail/Test013-has_input-biological_process.ttl index a7af5a0..af1c698 100644 --- a/test_ttl/go_cams/should_fail/Test013-has_input-biological_process.ttl +++ b/test_ttl/go_cams/should_fail/Test013-has_input-biological_process.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -346,7 +346,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000311/5d27d1cf00000323 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test014-has_input-molecular_function.ttl b/test_ttl/go_cams/should_fail/Test014-has_input-molecular_function.ttl index 8bfcb19..18acb62 100644 --- a/test_ttl/go_cams/should_fail/Test014-has_input-molecular_function.ttl +++ b/test_ttl/go_cams/should_fail/Test014-has_input-molecular_function.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -345,7 +345,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000330/5d27d1cf00000342 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test015-provides_direct_input_for-Biological_process.ttl b/test_ttl/go_cams/should_fail/Test015-provides_direct_input_for-Biological_process.ttl index 88845c1..260660f 100644 --- a/test_ttl/go_cams/should_fail/Test015-provides_direct_input_for-Biological_process.ttl +++ b/test_ttl/go_cams/should_fail/Test015-provides_direct_input_for-Biological_process.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -381,7 +381,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000349/5d27d1cf00000361 rdf:type owl:NamedIndividual , - ; + ; "155"^^xsd:string ; "60"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test016-provides_direct_input_for-cellular_component.ttl b/test_ttl/go_cams/should_fail/Test016-provides_direct_input_for-cellular_component.ttl index a88bdcd..e3b5110 100644 --- a/test_ttl/go_cams/should_fail/Test016-provides_direct_input_for-cellular_component.ttl +++ b/test_ttl/go_cams/should_fail/Test016-provides_direct_input_for-cellular_component.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -443,7 +443,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000368/5d27d1cf00000384 rdf:type owl:NamedIndividual , - ; + ; "155"^^xsd:string ; "60"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test017-provides_direct_input_for-MolecularEntity.ttl b/test_ttl/go_cams/should_fail/Test017-provides_direct_input_for-MolecularEntity.ttl index 53a012e..9ac5cc4 100644 --- a/test_ttl/go_cams/should_fail/Test017-provides_direct_input_for-MolecularEntity.ttl +++ b/test_ttl/go_cams/should_fail/Test017-provides_direct_input_for-MolecularEntity.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -404,7 +404,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000387/5d27d1cf00000399 rdf:type owl:NamedIndividual , - ; + ; "155"^^xsd:string ; "60"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test020-happens_during_BP_not_a_biological_phase.ttl b/test_ttl/go_cams/should_fail/Test020-happens_during_BP_not_a_biological_phase.ttl index 218428b..a7fab4b 100644 --- a/test_ttl/go_cams/should_fail/Test020-happens_during_BP_not_a_biological_phase.ttl +++ b/test_ttl/go_cams/should_fail/Test020-happens_during_BP_not_a_biological_phase.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0006352 @@ -447,7 +447,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000444/5d27d1cf00000461 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test021-happens_during_GOcomplex.ttl b/test_ttl/go_cams/should_fail/Test021-happens_during_GOcomplex.ttl index d4a89bb..6bb4b11 100644 --- a/test_ttl/go_cams/should_fail/Test021-happens_during_GOcomplex.ttl +++ b/test_ttl/go_cams/should_fail/Test021-happens_during_GOcomplex.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -250,7 +250,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000464/5d27d1cf00000468 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test021b-happens_during-complex.ttl b/test_ttl/go_cams/should_fail/Test021b-happens_during-complex.ttl index ef01652..3f0741b 100644 --- a/test_ttl/go_cams/should_fail/Test021b-happens_during-complex.ttl +++ b/test_ttl/go_cams/should_fail/Test021b-happens_during-complex.ttl @@ -189,8 +189,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -379,7 +379,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000484/5d27d1cf00000494 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test022-happens_during-molecular_function.ttl b/test_ttl/go_cams/should_fail/Test022-happens_during-molecular_function.ttl index 213e48a..3394244 100644 --- a/test_ttl/go_cams/should_fail/Test022-happens_during-molecular_function.ttl +++ b/test_ttl/go_cams/should_fail/Test022-happens_during-molecular_function.ttl @@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -291,7 +291,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000509/5d27d1cf00000517 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test023-enabled_by_2_MolecularEntity.ttl b/test_ttl/go_cams/should_fail/Test023-enabled_by_2_MolecularEntity.ttl index cf4b302..73c031f 100644 --- a/test_ttl/go_cams/should_fail/Test023-enabled_by_2_MolecularEntity.ttl +++ b/test_ttl/go_cams/should_fail/Test023-enabled_by_2_MolecularEntity.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -380,7 +380,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000531/5d27d1cf00000543 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test024-part_of_2_biological_process.ttl b/test_ttl/go_cams/should_fail/Test024-part_of_2_biological_process.ttl index d0dc3c8..f665b77 100644 --- a/test_ttl/go_cams/should_fail/Test024-part_of_2_biological_process.ttl +++ b/test_ttl/go_cams/should_fail/Test024-part_of_2_biological_process.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -380,7 +380,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000550/5d27d1cf00000562 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test025-occurs_in_2_cellular_component.ttl b/test_ttl/go_cams/should_fail/Test025-occurs_in_2_cellular_component.ttl index 992a646..e64662f 100644 --- a/test_ttl/go_cams/should_fail/Test025-occurs_in_2_cellular_component.ttl +++ b/test_ttl/go_cams/should_fail/Test025-occurs_in_2_cellular_component.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -381,7 +381,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000569/5d27d1cf00000581 rdf:type owl:NamedIndividual , - ; + ; "386.75"^^xsd:string ; "49"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test028-directly_provides_input_for_2_molecular_function.ttl b/test_ttl/go_cams/should_fail/Test028-directly_provides_input_for_2_molecular_function.ttl index e07ed5e..a1b999c 100644 --- a/test_ttl/go_cams/should_fail/Test028-directly_provides_input_for_2_molecular_function.ttl +++ b/test_ttl/go_cams/should_fail/Test028-directly_provides_input_for_2_molecular_function.ttl @@ -181,8 +181,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -385,7 +385,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000627/5d27d1cf00000639 rdf:type owl:NamedIndividual , - ; + ; "409.75"^^xsd:string ; "51"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test029-directly_positively_regulates_2_molecular_function.ttl b/test_ttl/go_cams/should_fail/Test029-directly_positively_regulates_2_molecular_function.ttl index 725b2ac..6ede813 100644 --- a/test_ttl/go_cams/should_fail/Test029-directly_positively_regulates_2_molecular_function.ttl +++ b/test_ttl/go_cams/should_fail/Test029-directly_positively_regulates_2_molecular_function.ttl @@ -189,8 +189,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -330,7 +330,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000666/5d27d1cf00000676 rdf:type owl:NamedIndividual , - ; + ; "49"^^xsd:string ; "69"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_fail/Test030-causally_upstream_of_or_within-2-biological_process.ttl b/test_ttl/go_cams/should_fail/Test030-causally_upstream_of_or_within-2-biological_process.ttl index a65c509..dad87a5 100644 --- a/test_ttl/go_cams/should_fail/Test030-causally_upstream_of_or_within-2-biological_process.ttl +++ b/test_ttl/go_cams/should_fail/Test030-causally_upstream_of_or_within-2-biological_process.ttl @@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -375,7 +375,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000647/5d27d1cf00000659 rdf:type owl:NamedIndividual , - ; + ; "205.75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , "http://orcid.org/0000-0003-1813-6857"^^xsd:string ; diff --git a/test_ttl/go_cams/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl b/test_ttl/go_cams/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl index 59b5ee7..de9baf0 100644 --- a/test_ttl/go_cams/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl +++ b/test_ttl/go_cams/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl @@ -170,8 +170,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -268,7 +268,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d251e6800000000/5d251e6800000003 rdf:type owl:NamedIndividual , - ; + ; "434.9801025390625"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string ; "2019-07-11"^^xsd:string ; diff --git a/test_ttl/go_cams/should_pass/Test001-missing_enabled_by.ttl b/test_ttl/go_cams/should_pass/Test001-missing_enabled_by.ttl index 612a5fd..3bed7b2 100644 --- a/test_ttl/go_cams/should_pass/Test001-missing_enabled_by.ttl +++ b/test_ttl/go_cams/should_pass/Test001-missing_enabled_by.ttl @@ -168,8 +168,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -340,7 +340,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050 rdf:type owl:NamedIndividual , - ; + ; "148.75"^^xsd:string ; "55"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl b/test_ttl/go_cams/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl index 67778d8..13e78e9 100644 --- a/test_ttl/go_cams/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl +++ b/test_ttl/go_cams/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl @@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -389,7 +389,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_pass/Test019-happens_during_BiologicalPhase.ttl b/test_ttl/go_cams/should_pass/Test019-happens_during_BiologicalPhase.ttl index c12f339..2d7bbe8 100644 --- a/test_ttl/go_cams/should_pass/Test019-happens_during_BiologicalPhase.ttl +++ b/test_ttl/go_cams/should_pass/Test019-happens_during_BiologicalPhase.ttl @@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -389,7 +389,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_pass/Test026-has_output_2_MolecularEntity.ttl b/test_ttl/go_cams/should_pass/Test026-has_output_2_MolecularEntity.ttl index c92e650..f2efd83 100644 --- a/test_ttl/go_cams/should_pass/Test026-has_output_2_MolecularEntity.ttl +++ b/test_ttl/go_cams/should_pass/Test026-has_output_2_MolecularEntity.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -380,7 +380,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/test_ttl/go_cams/should_pass/Test027-has_input_2_MolecularEntity.ttl b/test_ttl/go_cams/should_pass/Test027-has_input_2_MolecularEntity.ttl index 171fa5e..a542bd6 100644 --- a/test_ttl/go_cams/should_pass/Test027-has_input_2_MolecularEntity.ttl +++ b/test_ttl/go_cams/should_pass/Test027-has_input_2_MolecularEntity.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -455,7 +455,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,