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#ExampleModule
#Tue May 01 20:52:13 UTC 2018
JVMLevel=
LSID=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00374\:3.0
author=Edwin F. Juarez;UCSD - Mesirov Lab
categories=administration
#commandLine when run with source in Docker container:
commandLine=/ExampleModule/ExampleModule.py -f <filename> -a <add_custom_message> -m <message_to_add> -o <output_filename>
#commandLine when run with source in module zip/taskLib:
#commandLine=<python_3.6> <libdir>ExampleModule.py -f <filename> -a <add_custom_message> -m <message_to_add> -o <output_filename>
job.docker.image=genepattern/example-module:2
src.repo=https://github.com/genepattern/ExampleModule/tree/v3
cpuType=any
description=This is an example GenePattern module written in Python 3. It can be used as a template for future modules. It reads a file and potentially adds a line of text
documentationUrl=https://genepattern.github.io/ExampleModule/v3/
fileFormat=txt
language=Python
name=ExampleModule
os=any
p1_MODE=IN
p1_TYPE=FILE
p1_default_value=
p1_description=The file to be read
p1_fileFormat=txt
p1_flag=-f
p1_name=filename
p1_numValues=0..1
p1_optional=
p1_prefix=
p1_prefix_when_specified=
p1_type=java.io.File
p1_value=
p2_MODE=
p2_TYPE=TEXT
p2_default_value=False
p2_description=Whether or not to add a custom message
p2_fileFormat=
p2_flag=-a
p2_name=add_custom_message
p2_numValues=0..1
p2_optional=
p2_prefix=
p2_prefix_when_specified=
p2_type=java.lang.String
p2_value=False\=False;True\=True
p3_MODE=
p3_TYPE=TEXT
p3_default_value=
p3_description=What message to add (if any)
p3_fileFormat=
p3_flag=-m
p3_name=message_to_add
p3_numValues=0..1
p3_optional=
p3_prefix=
p3_prefix_when_specified=
p3_type=java.lang.String
p3_value=
p4_MODE=
p4_TYPE=TEXT
p4_default_value=
p4_description=The basename to use for output file (no need to add ".txt" at the end)
p4_fileFormat=
p4_flag=-o
p4_name=output_filename
p4_numValues=0..1
p4_optional=
p4_prefix=
p4_prefix_when_specified=
p4_type=java.lang.String
p4_value=
privacy=public
quality=production
taskDoc=
taskType=administration
userid=bhill@broadinstitute.org
version=Updated to use GitHub Pages doc url rather than doc.html