COSMIC_db_v98.md

COSMIC v98

For annovar db use

GRCh38/cosmic/v98/

COSMIC mutation data

Download:

• CosmicMutantExport.tsv.gz

• CosmicNCV.tsv

Coding and Non-conding mutations

Download:

• CosmicCodingMuts.vcf.gz

• CosmicNonCodingVariants.vcf.gz

prepare_annovar_user.pl -dbtype cosmic CosmicMutantExport.tsv -vcf CosmicCodingMuts.vcf > hg38_cosmic98_coding.txt
prepare_annovar_user.pl -dbtype cosmic CosmicNCV.tsv -vcf CosmicNonCodingVariants.vcf > hg38_cosmic98_noncoding.txt

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GRCh37/cosmic/v98/

COSMIC mutation data

Download:

• CosmicMutantExport.tsv.gz

• CosmicNCV.tsv

Coding and Non-conding mutations

Download:

• CosmicCodingMuts.vcf.gz

• CosmicNonCodingVariants.vcf.gz

prepare_annovar_user.pl -dbtype cosmic CosmicMutantExport.tsv -vcf CosmicCodingMuts.vcf > hg19_cosmic98_coding.txt
prepare_annovar_user.pl -dbtype cosmic CosmicNCV.tsv -vcf CosmicNonCodingVariants.vcf > hg19_cosmic98_noncoding.txt