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SingleSampleQc.json
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{
"SingleSampleQc.input_bam": "gs://broad-public-datasets/NA12878/NA12878.cram",
"SingleSampleQc.base_name": "NA12878",
"SingleSampleQc.contamination_sites_ud": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.UD",
"SingleSampleQc.contamination_sites_bed": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.bed",
"SingleSampleQc.contamination_sites_mu": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.mu",
"SingleSampleQc.ref_cache": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.ref_cache.tar.gz",
"SingleSampleQc.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict",
"SingleSampleQc.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta",
"SingleSampleQc.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai",
"SingleSampleQc.coverage_interval_list": "gs://gcp-public-data--broad-references/hg38/v0/wgs_coverage_regions.hg38.interval_list",
"SingleSampleQc.preemptible_tries": 3,
"SingleSampleQc.is_wgs": "true",
"SingleSampleQc.evaluation_thresholds": "https://raw.githubusercontent.com/genome/qc-analysis-pipeline/master/threshold_files/anvil_wgs_thresholds.tsv",
"SingleSampleQc.CollectRawWgsMetrics.memory_multiplier": 4,
"SingleSampleQc.CollectHsMetrics.memory_multiplier": 2,
"SingleSampleQc.ValidateSamFile.memory_multiplier": 2
}