compile_and_test_gt_next_large

#!/bin/sh -e

. uniqueness.sh

GT_SRC_DIR=/var/www/pub
GT_TAR_NAME=genometools-next.tar.gz
GT_DIR=genometools-next
METASCRIPTS_DIR=$HOME/gtmetascripts

# source git repository used for `git show`
export GIT_DIR=/var/www/pub/git/genometools.git

if [ $GT_SRC_DIR/$GT_TAR_NAME -nt $METASCRIPTS_DIR/gt_next_large/$GT_TAR_NAME ] \
    && is_unique
then
  COMMIT=`zcat $GT_SRC_DIR/$GT_TAR_NAME | git get-tar-commit-id`
  git show --stat $COMMIT

  echo "update gttestdata"
  unset GIT_DIR
  cd $HOME/gttestdata
  git pull

  mkdir -p $METASCRIPTS_DIR/gt_next_large
  cp -f $GT_SRC_DIR/$GT_TAR_NAME $METASCRIPTS_DIR/gt_next_large
  rm -rf $METASCRIPTS_DIR/gt_next_large/$GT_DIR
  cd $METASCRIPTS_DIR/gt_next_large
  tar xzf $GT_TAR_NAME
  cd $GT_DIR
  echo "large test"
  cd src/external
  cp $METASCRIPTS_DIR/hmmer-2.3.2.tar.gz .
  tar -xzf hmmer-2.3.2.tar.gz
  rm -f hmmer-2.3.2.tar.gz
  cd ../..
  make 64bit=yes with-hmmer=yes > /dev/null
  make 64bit=yes gttestdata=$HOME/gttestdata memcheck=yes test
  echo "test threaded version"
  make cleanup
  make 64bit=yes threads=yes > /dev/null
  valgrind --tool=helgrind bin/gt -j 8 -test > /dev/null
  echo "test with amalgamation=yes and assert=no"
  make cleanup
  make 64bit=yes amalgamation=yes > /dev/null
  make 64bit=yes amalgamation=yes assert=no test
fi