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[User Story] Consistent output formats #64

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21 of 22 tasks
fellen31 opened this issue Apr 4, 2024 · 1 comment
Open
21 of 22 tasks

[User Story] Consistent output formats #64

fellen31 opened this issue Apr 4, 2024 · 1 comment
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Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium user story a user story describing new functionality
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0.6

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@fellen31
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fellen31 commented Apr 4, 2024 •
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Need

As a user, I want clear outputs. At the moment variant files are a mix of vcf and bcf, some indexed and some not, some compressed and some not.

Suggested approach

Standardise output variant files as compressed and indexed vcf (vcf.gz) files.

Can be closed when:

VCF.GZ

BED.GZ

TBI/CSI
@fellen31 fellen31 added the enhancement New feature or request label Apr 4, 2024
@fellen31 fellen31 changed the title Output variant files as vcf.gz + index Output all variant files as vcf.gz + index Apr 4, 2024
@fellen31 fellen31 mentioned this issue Apr 4, 2024
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27 tasks
@fellen31 fellen31 added this to the Basic functionality milestone Apr 4, 2024
@fellen31 fellen31 removed this from the Basic functionality milestone Apr 16, 2024
@fellen31 fellen31 added this to Nallo May 3, 2024
@fellen31 fellen31 changed the title Output all variant files as vcf.gz + index Consistent output formats May 3, 2024
@fellen31 fellen31 added this to the 0.2 milestone May 3, 2024
@fellen31 fellen31 mentioned this issue May 21, 2024
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@fellen31 fellen31 moved this to In progress in Nallo May 21, 2024
@fellen31
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Let's break out file naming in a separate issue #154, since this will be more important closer to implementation.

@fellen31 fellen31 removed this from the 0.2 milestone May 31, 2024
@fellen31 fellen31 changed the title Consistent output formats [User Story] Consistent output formats Jun 13, 2024
@fellen31 fellen31 added user story a user story describing new functionality Gain L Gain Large Effort M Effort Medium Urgency M Urgency Medium and removed enhancement New feature or request labels Jun 13, 2024
@fellen31 fellen31 removed the status in Nallo Sep 24, 2024
@fellen31 fellen31 added this to the 0.5 milestone Nov 4, 2024
@fellen31 fellen31 modified the milestones: 0.5, 0.6 Jan 15, 2025
@fellen31 fellen31 modified the milestones: 0.5, 0.6 Feb 26, 2025
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Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium user story a user story describing new functionality
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