From 5c4b5582eb6390b389a680e4ce9328aa68db44f8 Mon Sep 17 00:00:00 2001 From: Felix Lenner <52530259+fellen31@users.noreply.github.com> Date: Tue, 25 Feb 2025 15:21:06 +0100 Subject: [PATCH 1/2] Add contributors to config --- CHANGELOG.md | 1 + nextflow.config | 59 +++++++++++++++++++++++++++++++++++++++++++------ 2 files changed, 53 insertions(+), 7 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8eef1318..c9155499 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#537](https://github.com/genomic-medicine-sweden/nallo/pull/537) - Added per-base depth output in d4 format from mosdepth - [#542](https://github.com/genomic-medicine-sweden/nallo/pull/542) - Added a hidden parameter `--publish_unannotated_family_svs` - [#544](https://github.com/genomic-medicine-sweden/nallo/pull/544) - Added `--skip_sv_calling` parameter to skip sv_calling subworkflow +- [#574](https://github.com/genomic-medicine-sweden/nallo/pull/574) - Added contributors to `nextflow.config` ### `Changed` diff --git a/nextflow.config b/nextflow.config index f4961f03..93df044d 100644 --- a/nextflow.config +++ b/nextflow.config @@ -274,16 +274,61 @@ dag { manifest { name = 'genomic-medicine-sweden/nallo' - author = """Felix Lenner""" // The author field is deprecated from Nextflow version 24.10.0, use contributors instead contributors = [ - // TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0 + [ + name: 'Ramprasad Neethiraj', + affiliation: 'School of Engineering sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden', + email: 'rne@kth.se', + github: 'https://github.com/ramprasadn', + contribution: ['contributor'], + orcid: 'https://orcid.org/0000-0001-7313-3734' + ], + [ + name: 'Anders Jemt', + affiliation: 'Genomics Medicine Center Karolinska, Karolinska University Hospital, Stockholm, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden', + email: 'anders.jemt@scilifelab.se', + github: 'https://github.com/jemten', + contribution: ['contributor'], + orcid: 'https://orcid.org/0000-0002-2219-0197' + ], + [ + name: 'Lucía Peña-Pérez', + affiliation: 'Center for Inherited Metabolic Diseases, Karolinska University Hospital, Stockholm, Sweden; Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden', + email: 'lucia.pena.perez@scilifelab.se', + github: 'https://github.com/Lucpen', + contribution: ['contributor'], + orcid: 'https://orcid.org/0000-0002-5044-7754' + ], + [ + name: 'Annick Renevey', + affiliation: 'Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden', + email: 'annick.renevey@scilifelab.se', + github: 'https://github.com/rannick', + contribution: ['contributor'], + orcid: 'https://orcid.org/0000-0001-7411-6063' + ], + [ + name: 'Peter Pruisscher', + affiliation: 'Genomics Medicine Center Karolinska, Karolinska University Hospital, Stockholm, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden', + email: 'peter.pruisscher@scilifelab.se', + github: 'https://github.com/peterpru', + contribution: ['contributor'], + orcid: 'https://orcid.org/0000-0002-6987-5839' + ], + [ + name: 'Padraic Corcoran', + affiliation: 'Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden. Clinical genomics, Science for life laboratory, Uppsala University.', + email: 'padraic.corcoran@scilifelab.uu.se', + github: 'https://github.com/padraicc', + contribution: ['contributor'], + ], [ name: 'Felix Lenner', - affiliation: '', - email: '', - github: '', - contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor') - orcid: '' + affiliation: 'Department of Immunology, Genetics and Pathology, Uppsala University, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden', + email: 'felix.lenner@scilifelab.se', + github: 'https://github.com/fellen31', + contribution: ['author','maintainer'], + orcid: 'https://orcid.org/0000-0002-9594-0710' ], ] homePage = 'https://github.com/genomic-medicine-sweden/nallo' From 6b2c7b69460cdaeb294fe34c1e69a4b21169eff9 Mon Sep 17 00:00:00 2001 From: Felix Lenner <52530259+fellen31@users.noreply.github.com> Date: Wed, 26 Feb 2025 11:18:13 +0100 Subject: [PATCH 2/2] Add missing --- nextflow.config | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/nextflow.config b/nextflow.config index 93df044d..9a857f89 100644 --- a/nextflow.config +++ b/nextflow.config @@ -322,6 +322,14 @@ manifest { github: 'https://github.com/padraicc', contribution: ['contributor'], ], + [ + name: 'Daniel Schmitz', + affiliation: 'Clinical Genomics Gothenburg, Science for Life Laboratory, Sahlgrenska Academy, University of Gothenburg.', + email: 'daniel.schmitz@gu.se', + github: 'https://github.com/Schmytzi', + contribution: ['contributor'], + orcid: 'https://orcid.org/0000-0003-4480-891X' + ], [ name: 'Felix Lenner', affiliation: 'Department of Immunology, Genetics and Pathology, Uppsala University, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden',