diff --git a/CHANGELOG.md b/CHANGELOG.md index b1987ac..d3d9d5b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -44,6 +44,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### Fixed - `gpseq_anim` + Crash when 2D mask folder is not provided. + + Wrong variable name in `anim.series.Series`. ### Removed - `gpseq_fromfish` diff --git a/pygpseq/anim/series.py b/pygpseq/anim/series.py index 708d650..93c3e72 100644 --- a/pygpseq/anim/series.py +++ b/pygpseq/anim/series.py @@ -288,10 +288,10 @@ def find_nuclei(self, **kwargs): # Save mask log += self.printout('Saving series object mask...', 2) - if 1 == np.max(imbin): - L = label(imbin) + if 1 == np.max(mask): + L = label(mask) else: - L = imbin + L = mask # Export binary mask as TIF if not type(None) == type(mask_tiff_dir) and not already_segmented: