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get_entropies.glue
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# Get entropies
delete module ifnlCalculateEntropyAA
create module -f modules/analysis/msa/ifnlCalculateEntropyAA.xml
# Set console output format
console set cmd-output-file-format tab
console set next-cmd-output-file ifnl-mammal-bp2-entropies-orf.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b orf
console set next-cmd-output-file ifnl-mammal-bp2-entropies-exposed_residues.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b exposed_residues
console set next-cmd-output-file ifnl-mammal-bp2-entropies-il10r2_binding_surface.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b il10r2_binding_surface
console set next-cmd-output-file ifnl-mammal-bp2-entropies-ifnlr1_binding_surface.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b ifnlr1_binding_surface
console set next-cmd-output-file ifnl-mammal-bp2-entropies-buried_residues.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b buried_residues
console set next-cmd-output-file ifnl-mammal-bp2-entropies-exposed_nonbinding_residues.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b exposed_nonbinding_residues
console set next-cmd-output-file ifnl-mammal-bp2-entropies-non_receptor_binding.tsv
module ifnlCalculateEntropyAA invoke-function calculateEntropyAA REF_IFNL_Mammal_b_MASTER AL_IFNL_MAMMAL_B ncbi-curated-mammalia-b non_receptor_binding