remote-gluetools-config.xml

<gluetools>
	<database>
		<username>hcvglue</username>
		<password>hcvglue</password>
		<vendor>MySQL</vendor>
		<jdbcUrl>jdbc:mysql://localhost:3306/HCV_GLUE?characterEncoding=UTF-8</jdbcUrl>	
	</database>
	<properties>
	
		<!-- BLAST-specific config -->
		<property>
			<name>gluetools.core.programs.blast.blastn.executable</name>
			<value>/opt/gluetools/blast/ncbi-blast-2.2.31+/bin/blastn</value>
		</property>
		<property>
			<name>gluetools.core.programs.blast.tblastn.executable</name>
			<value>/opt/gluetools/blast/ncbi-blast-2.2.31+/bin/tblastn</value>
		</property>
		<property>
			<name>gluetools.core.programs.blast.makeblastdb.executable</name>
			<value>/opt/gluetools/blast/ncbi-blast-2.2.31+/bin/makeblastdb</value>
		</property>
		<property>
			<name>gluetools.core.programs.blast.db.dir</name>
			<value>/opt/gluetools/blast/ncbi-blast-2.2.31+/blastdbs</value>
		</property>
		<property>
			<name>gluetools.core.programs.blast.search.threads</name>
			<value>4</value>
		</property>

		<!-- RAxML-specific config -->
		<property>
			<name>gluetools.core.programs.raxml.raxmlhpc.executable</name>
			<value>/opt/gluetools/raxml/bin/raxmlHPC-PTHREADS-AVX2</value>
		</property>
		<property>
			<name>gluetools.core.programs.raxml.raxmlhpc.cpus</name>
			<value>4</value>
		</property>
		<property>
			<name>gluetools.core.programs.raxml.temp.dir</name>
			<value>/opt/gluetools/raxml/tmp</value>
		</property>
		
		<!-- MAFFT-specific config -->
		<property>
			<name>gluetools.core.programs.mafft.executable</name>
			<value>/usr/local/bin/mafft</value>
		</property>
		<property>
			<name>gluetools.core.programs.mafft.cpus</name>
			<value>4</value>
		</property>
		<property>
			<name>gluetools.core.programs.mafft.temp.dir</name>
			<value>/opt/gluetools/mafft/tmp</value>
		</property>

		<!-- Cayenne -->
		<property>
			<name>cayenne.querycache.size</name>
			<value>30000</value>
		</property>
	</properties>
</gluetools>