Do not strip link path from builds.

Author: joaander

conda/delta.sh

@@ -1,16 +1,14 @@
 #!/bin/bash
 
 #SBATCH --job-name="glotzerlab-software build"
-#SBATCH --account=bbgw-delta-gpu
-#SBATCH --partition=gpuA40x4
+#SBATCH --account=bbgw-delta-cpu
+#SBATCH --partition=cpu
 #SBATCH --nodes=1
 #SBATCH --tasks-per-node=1
 #SBATCH --cpus-per-task=16
-#SBATCH --mem=48g
-#SBATCH --gpus=1
+#SBATCH --mem-per-cpu=2000M
 #SBATCH --time=8:00:00
 
-# TODO: rewrite to use CPU account when it is renewed
 export OUTPUT_FOLDER=/projects/bbgw/software/conda
 unset CMAKE_PREFIX_PATH
 

conda/hoomd/build_hoomd.sh

@@ -2,6 +2,7 @@ if [[ $1 == "gpu" ]]; then
     ENABLE_GPU="on"
 fi
 
+# Use CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE to keep absolute links to mpi and other modules
 cmake -B build \
       ${CMAKE_ARGS} \
       -DENABLE_MPI=on \
@@ -11,6 +12,7 @@ cmake -B build \
       -DENABLE_TBB=off \
       -DENABLE_LLVM=off \
       -DPLUGINS="" \
+      -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE \
       -DCMAKE_CXX_FLAGS=-march=native -DCMAKE_C_FLAGS=-march=native \
       -GNinja
 

conda/hoomd/meta.yaml

@@ -1,6 +1,6 @@
 {% set name = "hoomd" %}
 {% set version = "4.6.0" %}
-{% set build = 0 %}
+{% set build = 2 %}
 {% set sha256 = "0002381abd82f4f5d152edb3ac319c184da3980a4bcd377e511d13ef70932c74" %}
 
 
@@ -14,6 +14,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
+  binary_relocation: False
   script_env:
     - LD_LIBRARY_PATH
     - MPICC

conda/mpi4py/meta.yaml

@@ -1,6 +1,6 @@
 # Adapted from: https://github.com/conda-forge/mpi4py-feedstock/blob/main/recipe/meta.yaml
 
-{% set version = "3.1.5" %}
+{% set version = "3.1.6" %}
 {% set build = 0 %}
 
 package:
@@ -10,9 +10,10 @@ package:
 source:
   - fn: mpi4py-{{ version }}.tar.gz
     url: https://github.com/mpi4py/mpi4py/releases/download/{{ version }}/mpi4py-{{ version }}.tar.gz
-    sha256: a706e76db9255135c2fb5d1ef54cb4f7b0e4ad9e33cbada7de27626205f2a153
+    sha256: c8fa625e0f92b082ef955bfb52f19fa6691d29273d7d71135d295aa143dee6cb
 
 build:
+  binary_relocation: False
   number: {{ build }}
   string: {{ cluster }}_py{{ py }}h{{ PKG_HASH }}_{{ build }}
   script_env: