diff --git a/packages.yml b/packages.yml
index 9452a026..337a64e1 100644
--- a/packages.yml
+++ b/packages.yml
@@ -20,7 +20,7 @@ fresnel:
 hoomd:
   ignore: beta,alpha,rc
   repository: https://github.com/glotzerlab/hoomd-blue
-  version: v4.4.0
+  version: v4.4.1
 osu_microbenchmark:
   repository: null
   version: 5.4.1
diff --git a/requirements-source.txt b/requirements-source.txt
index 48722bdf..b980ebf5 100644
--- a/requirements-source.txt
+++ b/requirements-source.txt
@@ -1,4 +1,4 @@
-Cython==3.0.6
+Cython==3.0.7
 numpy==1.26.2
 pkgconfig==1.5.5
 pybind11==2.11.1
diff --git a/requirements.txt b/requirements.txt
index 2af5b780..77961c99 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -37,7 +37,7 @@ pytest==7.4.3
 miniball==1.2.0
 sympy==1.12
 tables==3.9.2; platform_machine != 'ppc64le'
-coverage==7.3.3
+coverage==7.3.4
 click==8.1.7
 pytest-cov==4.1.0
 ruamel.yaml==0.18.5
diff --git a/script/crusher/install.sh b/script/crusher/install.sh
index fa3af88d..6ea6ed25 100755
--- a/script/crusher/install.sh
+++ b/script/crusher/install.sh
@@ -180,7 +180,7 @@ fi
 if [ ! -n "$(ls -d $ROOT/lib/python*/site-packages/hoomd)" ]
 then
 
- git clone --recursive --branch v4.4.0 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
+ git clone --recursive --branch v4.4.1 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
     && cd hoomd \
     && mkdir -p build \
     && cd build \
diff --git a/script/frontier/install.sh b/script/frontier/install.sh
index 584f5edb..acbac71a 100755
--- a/script/frontier/install.sh
+++ b/script/frontier/install.sh
@@ -208,7 +208,7 @@ fi
 if [ ! -n "$(ls -d $ROOT/lib/python*/site-packages/hoomd)" ]
 then
 
- git clone --recursive --branch v4.4.0 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
+ git clone --recursive --branch v4.4.1 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
     && cd hoomd \
     && mkdir -p build \
     && cd build \
diff --git a/script/summit/install.sh b/script/summit/install.sh
index 458632af..3906d4c9 100755
--- a/script/summit/install.sh
+++ b/script/summit/install.sh
@@ -171,7 +171,7 @@ done <requirements-source-summit.txt
 if [ ! -n "$(ls -d $ROOT/lib/python*/site-packages/hoomd)" ]
 then
 
- git clone --recursive --branch v4.4.0 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
+ git clone --recursive --branch v4.4.1 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
     && cd hoomd \
     && mkdir -p build \
     && cd build \