.gitignore

.DS_Store
notes
bak/
glycotree_accessions.tsv
startDocker.sh
prepare_N-tree.sh
old_build_N-tree.sh
log/*.txt
log/*.log
log/*.lst
export/
currentInput/
documentation/
data/*.lst
data/*.zip
data/fully_determined/
data/input_gct
data/input_svg
data/def/
data/und/
data/gct/
data/svg/
data/bak/
data/Nlinked/*
data/Olinked/*
data/input_N/*
data/input_O/*
data/mapped/*
data/mapped/sorted/*
model/bak/
model/nodes/
model/json/match/
model/json/complete/
model/commands.txt
model/renumberRules.awk
code/bak/
portal/api/temp/*.csv
portal/api/temp/mapped/*.csv
portal/wtf.php
# portal/api/paths/allPaths.json
portal/api/paths/testCM.php
portal/api/paths/getpath.php
portal/api/paths/getpathD3.php
portal/api/.htaccess
portal/api/b64.php
portal/api/testBitSet.php
portal/api/testPW.php
portal/api/bak/
portal/force-layout.html
portal/force-layout-v4.html
portal/bak/
portal/js/bak/
SQL/scrape/
SQL/bak/
SQL/mysql*
SQL/match*
.env