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Update ShardedBAMWriting to be compatible with parallel BAM reading. #214

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deflaux opened this issue Sep 15, 2017 · 0 comments
Open

Update ShardedBAMWriting to be compatible with parallel BAM reading. #214

deflaux opened this issue Sep 15, 2017 · 0 comments

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@deflaux
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deflaux commented Sep 15, 2017

WriteBAMTransform used by ShardedBAMWriting assumes that it receives reads in order.

Add a group by and a sort operation so that input reads can be read from multiple BAM shards in parallel.
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