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optimize memory consumption #23

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subwaystation opened this issue Apr 6, 2020 · 1 comment

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subwaystation commented Apr 6, 2020

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6br commented Apr 30, 2020 •

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When I run the this command with public sequence data from here https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca/,

docker run -ti --rm --publish=3000:3000 --volume=`pwd`:/usr/src/app/data pipeline data/covid_data.gfa -c 10000

on https://github.com/mandosoft/pipeline (supporting on multi-zoom level support on component_segmentation).

It requires more than 16Gb for running all data and my laptop hangs up.

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