project.md

Project Details and Resources

This page is for the software details and logistics of working on the project. It's a work in progress. GitHub Issues will be created for each planned Feature or bug found by testers.

Project Documents

• Project Overiew
  • Getting Started with Pantograph (wiki)
  • Pantograph Description
  • Pantograph Software Architecture
  • Graph Genome Browser Specification (gdoc)
  • Source for these Docs
  • Pangenome of public SARS-CoV-2 genomes/2020-03-29 in RDF/Turtle

Teamwork Documents

• Get Involved
  • Basic Development Tasks
  • Our Team
  • Hackathon
  • Get Involved
• Tools and Process
  • Project Status Meeting
  • Logging Issues
  • Communication and Development Tools
  • Project Resources
  • Testing Procedure
  • Cheat Sheets
• Professional Standards (endorsed by us)
  • Javascript Style
  • Python Style (with 120 chars of max line length)
  • Code of Conduct

Project Taskboards

• Graph Genome Browser Consortium GitHub
• Project Details
  • Schematize Project Board
  • JBrowse Annotation Integration Project Board
  • Data standards in pipeline Project Board

Project Source Code

• Graph Genome Browser Consortium GitHub
• Component Source Code
  • Schematize
  • Pipeline
  • Project Documents
  • Graph Component Segmentation
  • Haplo Blocker
  • jbrowse-components
  • Optimized Dynamic Genome/graph Implementation
  • Graph Genomics Review
  • Genome variation graph via SPARQL

Other Hackathon Teams

• Hackathon COVID19 Phylogeny
• Workflow for COVID19 Assembly before we visualize it
• Public Sequence Resource

External Resources

• Frontiers Coronavirus Initiatives Directory (includes funding monitor)

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