diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
index 82ada1f..26d8954 100644
--- a/.github/workflows/CI.yml
+++ b/.github/workflows/CI.yml
@@ -57,8 +57,8 @@ jobs:
     - name: Test database embedding
       run: |
         cd data
-        time python bin/progres embed -l filepaths.txt -o out.pt
-        time python bin/progres search -q query.pdb -t out.pt
+        time python ../bin/progres embed -l filepaths.txt -o out.pt
+        time python ../bin/progres search -q query.pdb -t out.pt
   test_pypi:
     runs-on: ubuntu-latest
     strategy: