From c45aeb31977678e02d77198d306506f86cfb5781 Mon Sep 17 00:00:00 2001 From: Susanna Kiwala Date: Thu, 19 Dec 2024 08:58:59 -0600 Subject: [PATCH] Update to version 5.0.1 --- docs/conf.py | 2 +- docs/index.rst | 9 +++++++++ docs/releases/5_0.rst | 9 +++++++++ pvactools/tools/pvacview/server.R | 2 +- setup.py | 2 +- 5 files changed, 21 insertions(+), 3 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 7bc2ccb8..7c34584e 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -70,7 +70,7 @@ # The short X.Y version. version = '5.0' # The full version, including alpha/beta/rc tags. -release = '5.0.0' +release = '5.0.1' # The language for content autogenerated by Sphinx. Refer to documentation diff --git a/docs/index.rst b/docs/index.rst index 6d4b51cb..4179f7b3 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -57,6 +57,15 @@ Contents contact mailing_list +New in Version |release| +------------------------ + +This is a bugfix release. It fixes the following problem(s): + +- The ``--aggregate-inclusion-count-limit`` was not being passed along to the + aggregate report module in the pVACsplice pipeline correctly. This release + fixes that issue. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1167 + New in Version |version| ------------------------ diff --git a/docs/releases/5_0.rst b/docs/releases/5_0.rst index 457dbe77..ab18d713 100644 --- a/docs/releases/5_0.rst +++ b/docs/releases/5_0.rst @@ -40,3 +40,12 @@ ________ search if there were multiple variants or alt alleles located at the same genomic position. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1153 - Add additional trailing amino acids for frameshift insertions when creating fasta in order to capture a matched wildtype entry in large repetitive regions. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1155 + +Version 5.0.1 +------------- + +This is a bugfix release. It fixes the following problem(s): + +- The ``--aggregate-inclusion-count-limit`` was not being passed along to the + aggregate report module in the pVACsplice pipeline correctly. This release + fixes that issue. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1167 diff --git a/pvactools/tools/pvacview/server.R b/pvactools/tools/pvacview/server.R index 9c0396c4..5c8698f9 100644 --- a/pvactools/tools/pvacview/server.R +++ b/pvactools/tools/pvacview/server.R @@ -24,7 +24,7 @@ options(shiny.port = 3333) server <- shinyServer(function(input, output, session) { ## pVACtools version - output$version <- renderText({"pVACtools version 5.0.0"}) + output$version <- renderText({"pVACtools version 5.0.1"}) ##############################DATA UPLOAD TAB################################### ## helper function defined for generating shinyInputs in mainTable (Evaluation dropdown menus) diff --git a/setup.py b/setup.py index 96c6acf9..8f73876b 100644 --- a/setup.py +++ b/setup.py @@ -56,7 +56,7 @@ setup( name="pvactools", - version="5.0.0", + version="5.0.1", packages=[ "pvactools.tools", "pvactools.tools.pvacbind",