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integrate pVACcompare to pVACtools #1194

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mhoang22 opened this issue Feb 4, 2025 · 1 comment · May be fixed by #1203
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integrate pVACcompare to pVACtools #1194

mhoang22 opened this issue Feb 4, 2025 · 1 comment · May be fixed by #1203
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@ldhtnp
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@mhoang22
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mhoang22 commented Feb 4, 2025

review and add more features for ease of use
@malachig
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malachig commented Feb 4, 2025

To test with different versions of the software there are many example results here:
/storage1/fs1/gillandersw/Active/Project_0001_Clinical_Trials/pipeline_tests/hcc1395/pvactools_releases

In addition we should test with some multi-region tumor cases (e.g. GBMs):
/storage1/fs1/gpdunn/Active/Project_0001_Clinical/gc2609/gbm_antigen_dunn: vaccine_G103, vaccine_G104, vaccine_G110, vaccine_G113

@ldhtnp ldhtnp self-assigned this Feb 13, 2025
@ldhtnp ldhtnp linked a pull request Feb 17, 2025 that will close this issue
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@susannasiebert susannasiebert linked a pull request Feb 20, 2025 that will close this issue
Integrated pVACcompare into pVACtools #1203
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@susannasiebert susannasiebert added this to the 6.0 milestone Apr 1, 2025
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Integrated pVACcompare into pVACtools ldhtnp/pVACtools
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@malachig @susannasiebert @ldhtnp @mhoang22