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update paths
fix tables for real this time
Revert "fix the navigation tables on wiki pages" This reverts commit 1c78d5acac208efcaf4c284160febd715b2ddcb0.
fix the navigation tables on wiki pages
formatting of annotation pages
Updated Annotation (markdown)
minor edit
remove annotation section on Illumina IGenomes
Update the annotation docs to HISAT/StringTie/Ballgown.
Update to copy files to rnaseq working directory and set shell variables early.
Update Annotation to use GRCh38 GTF, chr22 + ERCC92, from Ensembl.
Consistent use of fenced code blocks.
fixed ftp to http urls
fix all links to cufflink manual pages