DESCRIPTION

Package: effectR
Title: Predicts Oomycete Effectors
Version: 1.0.3
Authors@R: c(person("Javier", "Tabima", email = "tabimaj@oregonstate.edu", role = c("aut", "cre")),person(c("Niklaus", "J."), "Grunwald", role = "ths", email =
              "grunwaln@science.oregonstate.edu"))
Description: Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>. 
Depends: 
	R (>= 3.5.0)
Imports:
    seqinr (>= 3.3.6),
    ggplot2 (>= 2.2.1),
    shiny,
    reshape2,
    utils,
    rmarkdown,
    viridis
License: GPL-2 | GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
Suggests: knitr,
    testthat
VignetteBuilder: knitr