'group' column in scgsva result@obj

[MingchenInSZ]

I am newer to GSVA, And i want to find the sig kegg path using the scrna data. But in the demo scripts, there is no 'group' in the metadata of the pbmc,How does the 'group' column appear in the data results? and what's the real meaning of group?

[guokai8]

Hi @MingchenInSZ ,
The group was the one you defined in your single-cell object. Here in the demo, the group could find:

data(pbmcs)
head(pbmcs@meta.data)

I hope this will help.
K