From f2edb81eef7438ba62a3b202a193f2101161d931 Mon Sep 17 00:00:00 2001 From: Jim Eldred Date: Wed, 4 May 2016 15:47:15 -0500 Subject: [PATCH] Update Tutorial.md --- Tutorial.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Tutorial.md b/Tutorial.md index 57aeea54..d6ed44f1 100755 --- a/Tutorial.md +++ b/Tutorial.md @@ -115,7 +115,7 @@ create_coordinates -i merged.vcf -o coordinates This step assumes you have already run CNVnator and that the output required for this step is stored in your analysis directory at `/temp/cnvnator-temp/NA12877.bam.hist.root`. If you have installed SpeedSeq, CNVnator is run as part of `speedseq sv`. More details about `speedseq sv` are [here](https://github.com/hall-lab/speedseq#speedseq-sv) -You will also need to prepare a subdirectory to hold the Copynumber(cn) VCF files +You will also need to prepare a subdirectory to hold the copynumber(cn) VCF files ``` mkdir -p cn ```