From 38bf5ef282901af4b172329e89868afdc66e9fd5 Mon Sep 17 00:00:00 2001
From: Haowen Zhang <hwzhang@gatech.edu>
Date: Sat, 18 Sep 2021 02:07:07 -0400
Subject: [PATCH] Actually trim sequences and quality scores.

---
 src/sequence_batch.h | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/src/sequence_batch.h b/src/sequence_batch.h
index e3fa1b2..9bde275 100644
--- a/src/sequence_batch.h
+++ b/src/sequence_batch.h
@@ -95,6 +95,9 @@ class SequenceBatch {
         negative_sequence_batch_[sequence_index].begin() + sequence->seq.l -
             length_after_trim);
     sequence->seq.l = length_after_trim;
+    sequence->seq.s[sequence->seq.l] = '\0';
+    sequence->qual.l = length_after_trim;
+    sequence->qual.s[sequence->qual.l] = '\0';
   }
   inline void SwapSequenceBatch(SequenceBatch &batch) {
     sequence_batch_.swap(batch.GetSequenceBatch());