Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

AttributeError with toytree #49

Open
jsodicoff opened this issue Dec 11, 2024 · 0 comments
Open

AttributeError with toytree #49

jsodicoff opened this issue Dec 11, 2024 · 0 comments

Comments

@jsodicoff
Copy link

Hi all, thanks for your work on this! I was wondering if you could help me troubleshoot this issue I have run into using the notebook on Colab. I get the following error after completion of the ml calculation, any ideas on what to try? Thanks.

AttributeError                            Traceback (most recent call last)
[/usr/local/lib/python3.10/dist-packages/topiary/_private/interface.py](https://localhost:8080/#) in wrapper(*args, **kwargs)
     31         try:
---> 32             value = func(*args, **kwargs)
     33         except Exception as e:

8 frames
AttributeError: module 'toytree' has no attribute 'Toytree'

The above exception was the direct cause of the following exception:

WrappedFunctionException                  Traceback (most recent call last)
WrappedFunctionException: 

Caught exception in function 'generate_ml_tree'. Returning to starting
directory and cleaning up. Check error stack for cause of
this error.



The above exception was the direct cause of the following exception:

WrappedFunctionException                  Traceback (most recent call last)
[/usr/local/lib/python3.10/dist-packages/topiary/_private/interface.py](https://localhost:8080/#) in wrapper(*args, **kwargs)
     36             err += "directory and cleaning up. Check error stack for cause of\n"
     37             err += "this error.\n\n"
---> 38             raise WrappedFunctionException(err) from e
     39 
     40         return value

WrappedFunctionException: 

Caught exception in function 'alignment_to_ancestors'. Returning to starting
directory and cleaning up. Check error stack for cause of
this error.```

































Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant