From 7c0dc13de46ac0b968cb7c3264764ccef85ecc3e Mon Sep 17 00:00:00 2001 From: Daniel Asay Date: Wed, 26 Jun 2024 11:01:21 -0400 Subject: [PATCH] modify --pwd arg in b0volume fmap creation --- dwiqc/tasks/prequal.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dwiqc/tasks/prequal.py b/dwiqc/tasks/prequal.py index 74f4326..6528949 100644 --- a/dwiqc/tasks/prequal.py +++ b/dwiqc/tasks/prequal.py @@ -134,7 +134,7 @@ def truncate_fmaps(self, fmap_files, inputs_dir): cmd = [ 'singularity', 'exec', - '--pwd', fmap_dir, + '--pwd', inputs_dir, self._fsl_sif, '/APPS/fsl/bin/fslselectvols', '-i', fmap_basename,