From b09ea3da9d9feaf9e42784970e5be75f30e9b81d Mon Sep 17 00:00:00 2001 From: "Jeremy R. Easton-Marks" Date: Fri, 9 Sep 2016 11:01:10 -0400 Subject: [PATCH 1/3] 1.2.1 and JavaDocs - Updated JavaDocs - Change version 1.2.1 --- javadoc/allclasses-frame.html | 111 - javadoc/allclasses-noframe.html | 111 - javadoc/constant-values.html | 4 +- javadoc/deprecated-list.html | 4 +- .../hms/dbmi/bd2k/irct/IRCTApplication.html | 52 +- .../hms/dbmi/bd2k/irct/action/Action.html | 4 +- .../dbmi/bd2k/irct/action/ActionStatus.html | 4 +- .../bd2k/irct/action/ActionUtilities.html | 4 +- .../hms/dbmi/bd2k/irct/action/Executable.html | 343 --- .../bd2k/irct/action/ExecutableState.html | 412 ---- .../dbmi/bd2k/irct/action/ExecutionPlan.html | 341 --- .../hms/dbmi/bd2k/irct/action/JoinAction.html | 4 +- .../dbmi/bd2k/irct/action/JoinExecutable.html | 454 ---- .../dbmi/bd2k/irct/action/ProcessAction.html | 4 +- .../bd2k/irct/action/ProcessExecutable.html | 458 ---- .../dbmi/bd2k/irct/action/QueryAction.html | 4 +- .../bd2k/irct/action/QueryExecutable.html | 413 ---- .../bd2k/irct/action/class-use/Action.html | 64 +- .../irct/action/class-use/ActionStatus.html | 4 +- .../action/class-use/ActionUtilities.html | 4 +- .../irct/action/class-use/Executable.html | 272 --- .../action/class-use/ExecutableState.html | 197 -- .../irct/action/class-use/JoinAction.html | 4 +- .../irct/action/class-use/ProcessAction.html | 4 +- .../action/class-use/ProcessExecutable.html | 124 - .../irct/action/class-use/QueryAction.html | 4 +- .../bd2k/irct/action/join/FullOuterJoin.html | 442 ---- .../dbmi/bd2k/irct/action/join/InnerJoin.html | 442 ---- .../bd2k/irct/action/join/JoinAction.html | 341 --- .../bd2k/irct/action/join/LeftOuterJoin.html | 442 ---- .../bd2k/irct/action/join/RightOuterJoin.html | 442 ---- .../action/join/class-use/JoinAction.html | 274 --- .../bd2k/irct/action/join/package-frame.html | 27 - .../bd2k/irct/action/join/package-tree.html | 148 -- .../dbmi/bd2k/irct/action/package-frame.html | 4 +- .../bd2k/irct/action/package-summary.html | 4 +- .../dbmi/bd2k/irct/action/package-tree.html | 4 +- .../dbmi/bd2k/irct/action/package-use.html | 48 +- .../irct/action/process/ExecuteProcess.html | 387 ---- .../process/class-use/ProcessAction.html | 201 -- .../irct/action/process/package-frame.html | 24 - .../bd2k/irct/action/process/package-use.html | 180 -- .../bd2k/irct/action/query/ExecuteQuery.html | 390 ---- .../bd2k/irct/action/query/package-frame.html | 24 - .../bd2k/irct/action/query/package-use.html | 159 -- .../bd2k/irct/class-use/IRCTApplication.html | 4 +- .../irct/controller/ExecutionController.html | 4 +- .../bd2k/irct/controller/JoinController.html | 4 +- .../bd2k/irct/controller/PathController.html | 55 +- .../irct/controller/ProcessController.html | 4 +- .../bd2k/irct/controller/QueryController.html | 21 +- .../irct/controller/ResourceController.html | 4 +- .../irct/controller/ResultController.html | 4 +- .../irct/controller/SecurityController.html | 6 +- .../class-use/ExecutionController.html | 4 +- .../controller/class-use/JoinController.html | 4 +- .../controller/class-use/PathController.html | 4 +- .../class-use/ProcessController.html | 4 +- .../controller/class-use/QueryController.html | 4 +- .../class-use/ResourceController.html | 4 +- .../class-use/ResultController.html | 4 +- .../class-use/SecurityController.html | 4 +- .../bd2k/irct/controller/package-frame.html | 4 +- .../bd2k/irct/controller/package-summary.html | 6 +- .../bd2k/irct/controller/package-tree.html | 4 +- .../bd2k/irct/controller/package-use.html | 4 +- .../CSVTabularDataConverter.html | 385 ---- .../JSONTabularDataConverter.html | 385 ---- .../dataconverter/ResultDataConverter.html | 12 +- .../irct/dataconverter/ResultDataStream.html | 8 +- .../XMLTabularDataConverter.html | 385 ---- .../XSLXTabularDataConverter.html | 385 ---- .../class-use/CSVTabularDataConverter.html | 124 - .../class-use/JSONTabularDataConverter.html | 124 - .../class-use/ResultDataConverter.html | 48 +- .../class-use/ResultDataStream.html | 4 +- .../class-use/XMLTabularDataConverter.html | 124 - .../class-use/XSLXTabularDataConverter.html | 124 - .../irct/dataconverter/package-frame.html | 8 +- .../irct/dataconverter/package-summary.html | 32 +- .../bd2k/irct/dataconverter/package-tree.html | 12 +- .../bd2k/irct/dataconverter/package-use.html | 27 +- .../EventConverterImplementation.html} | 167 +- .../IRCTEvent.html} | 81 +- .../bd2k/irct/event/IRCTEventListener.html | 699 ++++++ .../action/AfterAction.html} | 112 +- .../irct/event/action/AfterExecutionPlan.html | 248 ++ .../bd2k/irct/event/action/AfterJoin.html | 240 ++ .../bd2k/irct/event/action/AfterProcess.html | 240 ++ .../bd2k/irct/event/action/AfterQuery.html | 242 ++ .../irct/event/action/AfterVisualization.html | 198 ++ .../bd2k/irct/event/action/BeforeAction.html | 240 ++ .../event/action/BeforeExecutionPlan.html | 240 ++ .../bd2k/irct/event/action/BeforeJoin.html | 240 ++ .../bd2k/irct/event/action/BeforeProcess.html | 240 ++ .../bd2k/irct/event/action/BeforeQuery.html | 242 ++ .../event/action/BeforeVisualization.html | 198 ++ .../action/class-use/AfterAction.html} | 24 +- .../action/class-use/AfterExecutionPlan.html} | 24 +- .../action/class-use/AfterJoin.html} | 24 +- .../action/class-use/AfterProcess.html} | 24 +- .../event/action/class-use/AfterQuery.html | 124 + .../action/class-use/AfterVisualization.html | 124 + .../action/class-use/BeforeAction.html} | 24 +- .../action/class-use/BeforeExecutionPlan.html | 124 + .../event/action/class-use/BeforeJoin.html | 124 + .../action/class-use/BeforeProcess.html} | 24 +- .../event/action/class-use/BeforeQuery.html | 124 + .../action/class-use/BeforeVisualization.html | 124 + .../bd2k/irct/event/action/package-frame.html | 31 + .../action}/package-summary.html | 109 +- .../bd2k/irct/event/action/package-tree.html | 148 ++ .../action/package-use.html} | 32 +- .../EventConverterImplementation.html} | 37 +- .../bd2k/irct/event/class-use/IRCTEvent.html | 378 +++ .../class-use/IRCTEventListener.html} | 50 +- .../dbmi/bd2k/irct/event/find/AfterFind.html | 242 ++ .../dbmi/bd2k/irct/event/find/BeforeFind.html | 244 ++ .../find/class-use/AfterFind.html} | 24 +- .../find/class-use/BeforeFind.html} | 24 +- .../bd2k/irct/event/find/package-frame.html | 21 + .../find}/package-summary.html | 38 +- .../action => event/find}/package-tree.html | 29 +- .../find/package-use.html} | 32 +- .../dbmi/bd2k/irct/event/package-frame.html | 25 + .../predicate => event}/package-summary.html | 74 +- .../predicate => event}/package-tree.html | 59 +- .../hms/dbmi/bd2k/irct/event/package-use.html | 269 +++ .../irct/event/result/AfterGetResult.html | 245 ++ .../result/AfterSaveResult.html} | 110 +- .../irct/event/result/BeforeGetResult.html | 240 ++ .../irct/event/result/BeforeSaveResult.html | 238 ++ .../result/class-use/AfterGetResult.html | 124 + .../result/class-use/AfterSaveResult.html} | 24 +- .../result/class-use/BeforeGetResult.html | 124 + .../result/class-use/BeforeSaveResult.html} | 24 +- .../bd2k/irct/event/result/package-frame.html | 23 + .../result}/package-summary.html | 51 +- .../result}/package-tree.html | 37 +- .../result/package-use.html} | 32 +- .../irct/exception/ActionNotSetException.html | 4 +- .../exception/ClauseIsNotTheCorrectType.html | 272 --- .../exception/ClauseNotFoundException.html | 272 --- .../bd2k/irct/exception/FieldException.html | 4 +- .../exception/JoinActionSetupException.html | 4 +- .../irct/exception/JoinTypeNotSupported.html | 272 --- .../exception/LogicalOperatorNotFound.html | 272 --- .../irct/exception/PredicateException.html | 272 --- .../exception/PredicateTypeNotSupported.html | 272 --- .../bd2k/irct/exception/ProcessException.html | 4 +- .../bd2k/irct/exception/QueryException.html | 4 +- .../exception/ResourceInterfaceException.html | 4 +- .../exception/ResourceNotFoundException.html | 272 --- .../exception/SubQueryNotFoundException.html | 272 --- .../class-use/ActionNotSetException.html | 4 +- .../class-use/ClauseIsNotTheCorrectType.html | 124 - .../class-use/ClauseNotFoundException.html | 124 - .../exception/class-use/FieldException.html | 4 +- .../class-use/JoinActionSetupException.html | 4 +- .../class-use/JoinTypeNotSupported.html | 124 - .../class-use/LogicalOperatorNotFound.html | 124 - .../class-use/PredicateException.html | 124 - .../class-use/PredicateTypeNotSupported.html | 124 - .../exception/class-use/ProcessException.html | 4 +- .../exception/class-use/QueryException.html | 11 +- .../class-use/ResourceInterfaceException.html | 54 +- .../class-use/ResourceNotFoundException.html | 124 - .../class-use/SubQueryNotFoundException.html | 124 - .../bd2k/irct/exception/package-frame.html | 4 +- .../bd2k/irct/exception/package-summary.html | 8 +- .../bd2k/irct/exception/package-tree.html | 8 +- .../dbmi/bd2k/irct/exception/package-use.html | 4 +- .../dbmi/bd2k/irct/executable/Executable.html | 4 +- .../irct/executable/ExecutableChildNode.html | 4 +- .../irct/executable/ExecutableLeafNode.html | 4 +- .../irct/executable/ExecutableStatus.html | 4 +- .../bd2k/irct/executable/ExecutionPlan.html | 4 +- .../irct/executable/class-use/Executable.html | 66 +- .../class-use/ExecutableChildNode.html | 4 +- .../class-use/ExecutableLeafNode.html | 4 +- .../class-use/ExecutableStatus.html | 4 +- .../executable/class-use/ExecutionPlan.html | 4 +- .../bd2k/irct/executable/package-frame.html | 4 +- .../bd2k/irct/executable/package-summary.html | 4 +- .../bd2k/irct/executable/package-tree.html | 4 +- .../bd2k/irct/executable/package-use.html | 48 +- .../dbmi/bd2k/irct/join/FullOuterJoin.html | 4 +- .../hms/dbmi/bd2k/irct/join/InnerJoin.html | 4 +- .../bd2k/irct/join/JoinImplementation.html | 4 +- .../dbmi/bd2k/irct/join/LeftOuterJoin.html | 4 +- .../dbmi/bd2k/irct/join/RightOuterJoin.html | 4 +- .../irct/join/class-use/FullOuterJoin.html | 4 +- .../bd2k/irct/join/class-use/InnerJoin.html | 4 +- .../join/class-use/JoinImplementation.html | 4 +- .../irct/join/class-use/LeftOuterJoin.html | 4 +- .../irct/join/class-use/RightOuterJoin.html | 4 +- .../dbmi/bd2k/irct/join/package-frame.html | 4 +- .../dbmi/bd2k/irct/join/package-summary.html | 8 +- .../hms/dbmi/bd2k/irct/join/package-tree.html | 8 +- .../hms/dbmi/bd2k/irct/join/package-use.html | 4 +- .../model/action/class-use/ActionState.html | 193 -- .../bd2k/irct/model/action/package-frame.html | 20 - .../bd2k/irct/model/action/package-use.html | 159 -- .../Column.html => find/FindByOntology.html} | 167 +- .../ActionState.html => find/FindByPath.html} | 197 +- .../FindInformationInterface.html} | 176 +- .../class-use/FindByOntology.html} | 48 +- .../find/class-use/FindByPath.html} | 42 +- .../class-use/FindInformationInterface.html | 318 +++ .../bd2k/irct/model/find/package-frame.html | 25 + .../query => model/find}/package-summary.html | 38 +- .../query => model/find}/package-tree.html | 31 +- .../join => model/find}/package-use.html | 90 +- .../dbmi/bd2k/irct/model/join/IRCTJoin.html | 4 +- .../irct/model/join/class-use/IRCTJoin.html | 47 +- .../bd2k/irct/model/join/package-frame.html | 4 +- .../bd2k/irct/model/join/package-summary.html | 8 +- .../bd2k/irct/model/join/package-tree.html | 8 +- .../bd2k/irct/model/join/package-use.html | 34 +- .../bd2k/irct/model/ontology/DataType.html | 4 +- .../dbmi/bd2k/irct/model/ontology/Entity.html | 72 +- .../model/ontology/OntologyRelationship.html | 4 +- .../irct/model/ontology/OntologyType.html | 4 +- .../dbmi/bd2k/irct/model/ontology/Path.html | 676 ------ .../model/ontology/PrimitiveDataType.html | 453 ---- .../model/ontology/class-use/DataType.html | 4 +- .../irct/model/ontology/class-use/Entity.html | 172 +- .../class-use/OntologyRelationship.html | 4 +- .../ontology/class-use/OntologyType.html | 4 +- .../irct/model/ontology/class-use/Path.html | 472 ---- .../ontology/class-use/PrimitiveDataType.html | 278 --- .../irct/model/ontology/package-frame.html | 4 +- .../irct/model/ontology/package-summary.html | 4 +- .../irct/model/ontology/package-tree.html | 4 +- .../bd2k/irct/model/ontology/package-use.html | 46 +- .../bd2k/irct/model/process/IRCTProcess.html | 25 +- .../process/IRCTProcessParameterType.html | 466 ---- .../bd2k/irct/model/process/ProcessType.html | 511 ---- .../model/process/ProcessTypeParameter.html | 478 ---- .../process/ProcessTypeParameterType.html | 466 ---- .../model/process/class-use/IRCTProcess.html | 64 +- .../class-use/IRCTProcessParameter.html | 181 -- .../class-use/IRCTProcessParameterType.html | 194 -- .../model/process/class-use/ProcessType.html | 212 -- .../class-use/ProcessTypeParameter.html | 181 -- .../class-use/ProcessTypeParameterType.html | 194 -- .../irct/model/process/package-frame.html | 4 +- .../irct/model/process/package-summary.html | 4 +- .../bd2k/irct/model/process/package-tree.html | 4 +- .../bd2k/irct/model/process/package-use.html | 46 +- .../bd2k/irct/model/query/ClauseAbstract.html | 4 +- .../bd2k/irct/model/query/JoinClause.html | 42 +- .../dbmi/bd2k/irct/model/query/JoinType.html | 7 +- .../irct/model/query/LogicalOperator.html | 359 --- .../bd2k/irct/model/query/PredicateType.html | 4 +- .../irct/model/query/PredicateTypeValue.html | 601 ----- .../query/PredicateTypeValueDataType.html | 466 ---- .../hms/dbmi/bd2k/irct/model/query/Query.html | 38 +- .../bd2k/irct/model/query/SelectClause.html | 4 +- .../dbmi/bd2k/irct/model/query/SubQuery.html | 8 +- .../bd2k/irct/model/query/WhereClause.html | 4 +- .../model/query/class-use/ClauseAbstract.html | 4 +- .../model/query/class-use/JoinClause.html | 4 +- .../irct/model/query/class-use/JoinType.html | 138 +- .../query/class-use/LogicalOperator.html | 235 -- .../model/query/class-use/PredicateType.html | 4 +- .../query/class-use/PredicateTypeValue.html | 177 -- .../class-use/PredicateTypeValueDataType.html | 215 -- .../irct/model/query/class-use/Query.html | 68 +- .../model/query/class-use/SelectClause.html | 4 +- .../irct/model/query/class-use/SubQuery.html | 4 +- .../model/query/class-use/WhereClause.html | 4 +- .../bd2k/irct/model/query/package-frame.html | 4 +- .../irct/model/query/package-summary.html | 4 +- .../bd2k/irct/model/query/package-tree.html | 4 +- .../bd2k/irct/model/query/package-use.html | 63 +- .../PredicateImplementationInterface.html | 345 --- .../PredicateImplementationInterface.html | 216 -- .../model/query/predicate/package-frame.html | 20 - .../model/query/predicate/package-use.html | 182 -- .../dbmi/bd2k/irct/model/resource/Field.html | 4 +- .../irct/model/resource/LogicalOperator.html | 4 +- .../PathResourceImplementationInterface.html | 358 --- .../model/resource/PrimitiveDataType.html | 4 +- ...rocessResourceImplementationInterface.html | 293 --- .../bd2k/irct/model/resource/ProcessType.html | 4 +- .../QueryResourceImplementationInterface.html | 338 --- .../bd2k/irct/model/resource/Resource.html | 103 +- .../ResourceImplementationInterface.html | 325 --- .../irct/model/resource/ResourceState.html | 4 +- .../irct/model/resource/class-use/Field.html | 4 +- .../resource/class-use/LogicalOperator.html | 4 +- .../PathResourceImplementationInterface.html | 124 - .../resource/class-use/PrimitiveDataType.html | 4 +- ...rocessResourceImplementationInterface.html | 124 - .../model/resource/class-use/ProcessType.html | 4 +- .../QueryResourceImplementationInterface.html | 124 - .../model/resource/class-use/Resource.html | 133 +- .../ResourceImplementationInterface.html | 246 -- .../resource/class-use/ResourceState.html | 4 +- .../PathResourceImplementationInterface.html | 77 +- ...rocessResourceImplementationInterface.html | 4 +- .../QueryResourceImplementationInterface.html | 4 +- .../ResourceImplementationInterface.html | 4 +- ...zationResourceImplementationInterface.html | 4 +- .../PathResourceImplementationInterface.html | 4 +- ...rocessResourceImplementationInterface.html | 4 +- .../QueryResourceImplementationInterface.html | 4 +- .../ResourceImplementationInterface.html | 4 +- ...zationResourceImplementationInterface.html | 4 +- .../implementation/package-frame.html | 4 +- .../implementation/package-summary.html | 4 +- .../resource/implementation/package-tree.html | 4 +- .../resource/implementation/package-use.html | 4 +- .../irct/model/resource/package-frame.html | 4 +- .../irct/model/resource/package-summary.html | 4 +- .../irct/model/resource/package-tree.html | 4 +- .../bd2k/irct/model/resource/package-use.html | 82 +- .../hms/dbmi/bd2k/irct/model/result/Data.html | 66 +- .../result/DataConverterImplementation.html | 4 +- .../bd2k/irct/model/result/FileResultSet.html | 1875 --------------- .../dbmi/bd2k/irct/model/result/Joinable.html | 502 ---- .../irct/model/result/MemoryResultSet.html | 1372 ----------- .../bd2k/irct/model/result/Persistable.html | 4 +- .../dbmi/bd2k/irct/model/result/Result.html | 4 +- .../irct/model/result/ResultDataType.html | 4 +- .../bd2k/irct/model/result/ResultSet.html | 1455 ------------ .../bd2k/irct/model/result/ResultSetImpl.html | 2045 ----------------- .../bd2k/irct/model/result/ResultStatus.html | 4 +- .../irct/model/result/class-use/Column.html | 199 -- .../irct/model/result/class-use/Data.html | 4 +- .../DataConverterImplementation.html | 4 +- .../irct/model/result/class-use/Joinable.html | 219 -- .../model/result/class-use/Persistable.html | 4 +- .../irct/model/result/class-use/Result.html | 76 +- .../result/class-use/ResultDataType.html | 20 +- .../model/result/class-use/ResultSet.html | 537 ----- .../model/result/class-use/ResultStatus.html | 4 +- .../exception/PersistableException.html | 4 +- .../result/exception/ResultSetException.html | 4 +- .../result/exception/RowSetExeception.html | 4 +- .../class-use/PersistableException.html | 4 +- .../class-use/ResultSetException.html | 4 +- .../exception/class-use/RowSetExeception.html | 4 +- .../model/result/exception/package-frame.html | 4 +- .../result/exception/package-summary.html | 4 +- .../model/result/exception/package-tree.html | 4 +- .../model/result/exception/package-use.html | 4 +- .../model/result/json/JSONResultImpl.html | 11 +- .../model/result/json/JsonFileResult.html | 45 +- .../result/json/class-use/JSONResultImpl.html | 4 +- .../result/json/class-use/JsonFileResult.html | 4 +- .../irct/model/result/json/package-frame.html | 4 +- .../model/result/json/package-summary.html | 4 +- .../irct/model/result/json/package-tree.html | 4 +- .../irct/model/result/json/package-use.html | 4 +- .../bd2k/irct/model/result/package-frame.html | 4 +- .../irct/model/result/package-summary.html | 4 +- .../bd2k/irct/model/result/package-tree.html | 4 +- .../bd2k/irct/model/result/package-use.html | 48 +- .../irct/model/result/tabular/Column.html | 4 +- .../model/result/tabular/FileResultSet.html | 107 +- .../model/result/tabular/MemoryResultSet.html | 6 +- .../irct/model/result/tabular/ResultSet.html | 11 +- .../model/result/tabular/ResultSetImpl.html | 97 +- .../bd2k/irct/model/result/tabular/Row.html | 4 +- .../result/tabular/class-use/Column.html | 4 +- .../tabular/class-use/FileResultSet.html | 4 +- .../tabular/class-use/MemoryResultSet.html | 4 +- .../result/tabular/class-use/ResultSet.html | 4 +- .../tabular/class-use/ResultSetImpl.html | 4 +- .../model/result/tabular/class-use/Row.html | 4 +- .../model/result/tabular/package-frame.html | 4 +- .../model/result/tabular/package-summary.html | 4 +- .../model/result/tabular/package-tree.html | 4 +- .../model/result/tabular/package-use.html | 4 +- .../dbmi/bd2k/irct/model/security/JWT.html | 4 +- .../irct/model/security/SecureSession.html | 4 +- .../dbmi/bd2k/irct/model/security/Token.html | 4 +- .../dbmi/bd2k/irct/model/security/User.html | 4 +- .../irct/model/security/class-use/JWT.html | 4 +- .../security/class-use/SecureSession.html | 268 ++- .../irct/model/security/class-use/Token.html | 4 +- .../irct/model/security/class-use/User.html | 52 +- .../irct/model/security/package-frame.html | 4 +- .../irct/model/security/package-summary.html | 4 +- .../irct/model/security/package-tree.html | 4 +- .../bd2k/irct/model/security/package-use.html | 96 +- .../VisualizationReturnType.html | 4 +- .../visualization/VisualizationType.html | 4 +- .../class-use/VisualizationReturnType.html | 4 +- .../class-use/VisualizationType.html | 4 +- .../model/visualization/package-frame.html | 4 +- .../model/visualization/package-summary.html | 4 +- .../model/visualization/package-tree.html | 4 +- .../irct/model/visualization/package-use.html | 4 +- .../hms/dbmi/bd2k/irct/package-frame.html | 4 +- .../hms/dbmi/bd2k/irct/package-summary.html | 4 +- .../hms/dbmi/bd2k/irct/package-tree.html | 4 +- .../hms/dbmi/bd2k/irct/package-use.html | 4 +- .../bd2k/irct/security/SecurityUtility.html | 4 +- .../security/class-use/SecurityUtility.html | 4 +- .../bd2k/irct/security/package-frame.html | 4 +- .../bd2k/irct/security/package-summary.html | 8 +- .../dbmi/bd2k/irct/security/package-tree.html | 8 +- .../dbmi/bd2k/irct/security/package-use.html | 4 +- .../dbmi/bd2k/irct/util/JsonUtilities.html | 289 --- .../hms/dbmi/bd2k/irct/util/Utilities.html | 35 +- .../bd2k/irct/util/class-use/Utilities.html | 4 +- .../irct/util/converter/DataConverter.html | 4 +- .../util/converter/DataTypeConverter.html | 8 +- ... => IRCTEventImplementationConverter.html} | 64 +- .../util/converter/JoinActionConverter.html | 8 +- .../OntologyRelationshipConverter.html | 4 +- .../converter/ProcessActionConverter.html | 4 +- .../ResourceImplementationConverter.html | 4 +- .../ResultDataImplementationConverter.html | 4 +- .../util/converter/ResultSetConverter.html | 303 --- .../converter/class-use/DataConverter.html | 4 +- .../class-use/DataTypeConverter.html | 4 +- ... => IRCTEventImplementationConverter.html} | 24 +- .../class-use/JoinActionConverter.html | 4 +- .../OntologyRelationshipConverter.html | 4 +- .../class-use/ProcessActionConverter.html | 4 +- .../ResourceImplementationConverter.html | 4 +- .../ResultDataImplementationConverter.html | 4 +- .../irct/util/converter/package-frame.html | 5 +- .../irct/util/converter/package-summary.html | 23 +- .../irct/util/converter/package-tree.html | 9 +- .../bd2k/irct/util/converter/package-use.html | 4 +- .../dbmi/bd2k/irct/util/package-frame.html | 5 +- .../dbmi/bd2k/irct/util/package-summary.html | 18 +- .../hms/dbmi/bd2k/irct/util/package-tree.html | 9 +- .../hms/dbmi/bd2k/irct/util/package-use.html | 4 +- javadoc/help-doc.html | 229 -- javadoc/index-files/index-1.html | 80 +- javadoc/index-files/index-10.html | 8 +- javadoc/index-files/index-11.html | 8 +- javadoc/index-files/index-12.html | 8 +- javadoc/index-files/index-13.html | 8 +- javadoc/index-files/index-14.html | 8 +- javadoc/index-files/index-15.html | 8 +- javadoc/index-files/index-16.html | 12 +- javadoc/index-files/index-17.html | 63 +- javadoc/index-files/index-18.html | 14 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/dev/null @@ -1,111 +0,0 @@ - - - - - -All Classes - - - - - -

All Classes

-
- -
- - diff --git a/javadoc/allclasses-noframe.html b/javadoc/allclasses-noframe.html deleted file mode 100644 index 631c623..0000000 --- a/javadoc/allclasses-noframe.html +++ /dev/null @@ -1,111 +0,0 @@ - - - - - -All Classes - - - - - -

All Classes

-
- -
- - diff --git a/javadoc/constant-values.html b/javadoc/constant-values.html index 6aa114e..a21c037 100644 --- a/javadoc/constant-values.html +++ b/javadoc/constant-values.html @@ -2,9 +2,9 @@ - + Constant Field Values - + diff --git a/javadoc/deprecated-list.html b/javadoc/deprecated-list.html index 12418a4..478cb86 100644 --- a/javadoc/deprecated-list.html +++ b/javadoc/deprecated-list.html @@ -2,9 +2,9 @@ - + Deprecated List - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html index 3374668..a8c578a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html @@ -2,9 +2,9 @@ - + IRCTApplication - + @@ -184,29 +184,29 @@

Method Summary

-java.util.Properties -getProperties() -
Get the properties
- - - java.util.Map<java.lang.String,Resource> getResources()
Returns a map of the resources where the Resource name is the key, and the Resource itself is the value
- + ResultDataConverter getResultDataConverter(ResultDataType dataType, java.lang.String format)
Returns a dataconveter for a given datatype and format
- + java.util.Map<ResultDataType,java.util.List<DataConverterImplementation>> getResultDataConverters()  + +java.lang.String +getResultDataFolder() +
Get the name of the result data folder
+ + java.util.Map<java.lang.String,IRCTJoin> getSupportedJoinTypes() @@ -235,19 +235,19 @@

Method Summary

void -setProperties(java.util.Properties properties) -
Set the properties
+setResources(java.util.Map<java.lang.String,Resource> resources) +
Sets a map of the resources.
void -setResources(java.util.Map<java.lang.String,Resource> resources) -
Sets a map of the resources.
- +setResultDataConverters(java.util.Map<ResultDataType,java.util.List<DataConverterImplementation>> resultDataConverters)  void -setResultDataConverters(java.util.Map<ResultDataType,java.util.List<DataConverterImplementation>> resultDataConverters)  +setResultDataFolder(java.lang.String resultDataFolder) +
Sets the name of the result data folder
+ void @@ -504,31 +504,31 @@

doesJoinExists

- + - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Action.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Action.html index 366db9e..b52f0e0 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Action.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Action.html @@ -2,9 +2,9 @@ - + Action - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionStatus.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionStatus.html index a68244e..cb2fdf6 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionStatus.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionStatus.html @@ -2,9 +2,9 @@ - + ActionStatus - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionUtilities.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionUtilities.html index 47b325c..5b1d29f 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionUtilities.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/ActionUtilities.html @@ -2,9 +2,9 @@ - + ActionUtilities - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Executable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Executable.html deleted file mode 100644 index ce62261..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/Executable.html +++ /dev/null @@ -1,343 +0,0 @@ - - - - - -Executable - - - - - - - - -
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edu.harvard.hms.dbmi.bd2k.irct.action
-

Interface Executable

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    All Known Implementing Classes:
    -
    JoinExecutable, ProcessExecutable, QueryExecutable
    -
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    public interface Executable
    -
    The executable interface provides a set of methods that an executable must - implement. An executable is the implementing class for any type of process, - query, or action.
    -
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    Author:
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    Jeremy R. Easton-Marks
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      Method Detail

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        setup

        -
        void setup(Action action)
        -
        Set up the executable with an action
        -
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        Parameters:
        -
        action - Action to be executed
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        getState

        -
        ExecutableState getState()
        -
        Get the current state of the executable
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        Returns:
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        Executable State
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        getResource

        -
        Resource getResource()
        -
        Returns the resource the executable will be run on
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        Returns:
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        Resource to run on
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        setResource

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        void setResource(Resource resource)
        -
        Sets the resource this executable will be run on
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        -
        resource - Resource to run on
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edu.harvard.hms.dbmi.bd2k.irct.action
-

Enum ExecutableState

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    All Implemented Interfaces:
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    java.io.Serializable, java.lang.Comparable<ExecutableState>
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    public enum ExecutableState
-extends java.lang.Enum<ExecutableState>
    -
    An enumeration of the available executable states
    -
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    Author:
    -
    Jeremy R. Easton-Marks
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      Enum Constant Summary

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      Enum Constants 
      Enum Constant and Description
      BLOCKED -
      Currently blocked
      -
      COMPLETED -
      The executable has completed
      -
      CREATED -
      Created but not running
      -
      RUNNING -
      Currently running
      -
      TERMINATED -
      The executable has been terminated
      -
      WAITING -
      Waiting for the next action
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      -
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      Method Summary

      - - - - - - - - - - - - - - -
      All Methods Static Methods Concrete Methods 
      Modifier and TypeMethod and Description
      static ExecutableStatevalueOf(java.lang.String name) -
      Returns the enum constant of this type with the specified name.
      -
      static ExecutableState[]values() -
      Returns an array containing the constants of this enum type, in -the order they are declared.
      -
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        Methods inherited from class java.lang.Enum

        -compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
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        Methods inherited from class java.lang.Object

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      Enum Constant Detail

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        CREATED

        -
        public static final ExecutableState CREATED
        -
        Created but not running
        -
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        WAITING

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        public static final ExecutableState WAITING
        -
        Waiting for the next action
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        RUNNING

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        public static final ExecutableState RUNNING
        -
        Currently running
        -
        • -
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        BLOCKED

        -
        public static final ExecutableState BLOCKED
        -
        Currently blocked
        -
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        TERMINATED

        -
        public static final ExecutableState TERMINATED
        -
        The executable has been terminated
        -
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        COMPLETED

        -
        public static final ExecutableState COMPLETED
        -
        The executable has completed
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      Method Detail

      - - - -
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        values

        -
        public static ExecutableState[] values()
        -
        Returns an array containing the constants of this enum type, in -the order they are declared. This method may be used to iterate -over the constants as follows: -
        -for (ExecutableState c : ExecutableState.values())
-    System.out.println(c);
-
        -
        -
        Returns:
        -
        an array containing the constants of this enum type, in the order they are declared
        -
        -
        • -
      - - - -
        -
      • -

        valueOf

        -
        public static ExecutableState valueOf(java.lang.String name)
        -
        Returns the enum constant of this type with the specified name. -The string must match exactly an identifier used to declare an -enum constant in this type. (Extraneous whitespace characters are -not permitted.)
        -
        -
        Parameters:
        -
        name - the name of the enum constant to be returned.
        -
        Returns:
        -
        the enum constant with the specified name
        -
        Throws:
        -
        java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
        -
        java.lang.NullPointerException - if the argument is null
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edu.harvard.hms.dbmi.bd2k.irct.action
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Class ExecutionPlan

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    public class ExecutionPlan
-extends java.lang.Object
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    An execution plan is series of executable processes that are run by the IRCT. - An execution plan is run each time a query, join, or process request for - execution is made.
    -
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    Author:
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    Jeremy R. Easton-Marks
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      Constructor Summary

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      Constructors 
      Constructor and Description
      ExecutionPlan() 
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      Method Summary

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      All Methods Instance Methods Concrete Methods 
      Modifier and TypeMethod and Description
      ResultSetgetResults() -
      Return the results of the execution plan if they are available
      -
      ExecutableStategetState() -
      Returns the current execution state
      -
      voidrun() -
      Run the base execution plan
      -
      voidsetup(Executable executable) -
      Setup the execution plan with the base executable
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        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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      Constructor Detail

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        ExecutionPlan

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        public ExecutionPlan()
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      Method Detail

      - - - -
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        setup

        -
        public void setup(Executable executable)
        -
        Setup the execution plan with the base executable
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        Parameters:
        -
        executable - Base executable
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        • -
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        run

        -
        public void run()
        -
        Run the base execution plan
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        getResults

        -
        public ResultSet getResults()
        -
        Return the results of the execution plan if they are available
        -
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        Returns:
        -
        Results
        -
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        • -
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        getState

        -
        public ExecutableState getState()
        -
        Returns the current execution state
        -
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        Returns:
        -
        Execution state
        -
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- - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinAction.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinAction.html index 65434a3..42b9749 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinAction.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinAction.html @@ -2,9 +2,9 @@ - + JoinAction - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinExecutable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinExecutable.html deleted file mode 100644 index bdaa7da..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/JoinExecutable.html +++ /dev/null @@ -1,454 +0,0 @@ - - - - - -JoinExecutable - - - - - - - - -
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edu.harvard.hms.dbmi.bd2k.irct.action
-

Class JoinExecutable

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    All Implemented Interfaces:
    -
    BinaryTreeExecutable, Executable
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    public class JoinExecutable
-extends java.lang.Object
-implements Executable, BinaryTreeExecutable
    -
    The query executable implements the Executable interface for executing - local joins. It also supports binary tree executions through the - BinaryTreeExecutable interface. - - NOTE: The current implementation has not been implemented
    -
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    Author:
    -
    Jeremy R. Easton-Marks
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      Constructor Detail

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        JoinExecutable

        -
        public JoinExecutable()
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      Method Detail

      - - - -
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        setup

        -
        public void setup(Action action)
        -
        Description copied from interface: Executable
        -
        Set up the executable with an action
        -
        -
        Specified by:
        -
        setup in interface Executable
        -
        Parameters:
        -
        action - Action to be executed
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        • -
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        run

        -
        public void run()
        -
        Description copied from interface: Executable
        -
        Run the executable
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        Specified by:
        -
        run in interface Executable
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        -
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      - - - -
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        getState

        -
        public ExecutableState getState()
        -
        Description copied from interface: Executable
        -
        Get the current state of the executable
        -
        -
        Specified by:
        -
        getState in interface Executable
        -
        Returns:
        -
        Executable State
        -
        -
        • -
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        getResults

        -
        public ResultSet getResults()
        -
        Description copied from interface: Executable
        -
        Returns the result set
        -
        -
        Specified by:
        -
        getResults in interface Executable
        -
        Returns:
        -
        Result Set
        -
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        • -
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        -
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        setResource

        -
        public void setResource(Resource resource)
        -
        Description copied from interface: Executable
        -
        Sets the resource this executable will be run on
        -
        -
        Specified by:
        -
        setResource in interface Executable
        -
        Parameters:
        -
        resource - Resource to run on
        -
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        getResource

        -
        public Resource getResource()
        -
        Description copied from interface: Executable
        -
        Returns the resource the executable will be run on
        -
        -
        Specified by:
        -
        getResource in interface Executable
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        Returns:
        -
        Resource to run on
        -
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edu.harvard.hms.dbmi.bd2k.irct.action
-

Class ProcessExecutable

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    All Implemented Interfaces:
    -
    BinaryTreeExecutable, Executable
    -
    -
    -
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    public class ProcessExecutable
-extends java.lang.Object
-implements Executable, BinaryTreeExecutable
    -
    The query executable implements the Executable interface for executing - processes. It also supports binary tree executions through the - BinaryTreeExecutable interface.
    -
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    Author:
    -
    Jeremy R. Easton-Marks
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edu.harvard.hms.dbmi.bd2k.irct.action
-

Class QueryExecutable

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    All Implemented Interfaces:
    -
    Executable
    -
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    public class QueryExecutable
-extends java.lang.Object
-implements Executable
    -
    The query executable implements the Executable interface for executing - queries. - - NOTE: The current implementation does not support any child processes.
    -
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    Author:
    -
    Jeremy R. Easton-Marks
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      Constructor Summary

      - - - - - - - - -
      Constructors 
      Constructor and Description
      QueryExecutable() 
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      Method Summary

      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      All Methods Instance Methods Concrete Methods 
      Modifier and TypeMethod and Description
      ResourcegetResource() -
      Returns the resource the executable will be run on
      -
      ResultSetgetResults() -
      Returns the result set
      -
      ExecutableStategetState() -
      Get the current state of the executable
      -
      voidrun() -
      Run the executable
      -
      voidsetResource(Resource resource) -
      Sets the resource this executable will be run on
      -
      voidsetup(Action action) -
      Set up the executable with an action
      -
      -
        -
      • - - -

        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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- - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Action.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Action.html index e70d6ff..6cbcc64 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Action.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Action.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.action.Action - + @@ -87,6 +87,14 @@

  +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -127,6 +135,58 @@

Uses of + + +

Uses of Action in edu.harvard.hms.dbmi.bd2k.irct.event

+ + + + + + + + + + + + + + + + +
Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type Action 
Modifier and TypeMethod and Description
voidIRCTEventListener.afterAction(SecureSession session, + Action action) +
Runs the event listeners after an action is run
+
voidIRCTEventListener.beforeAction(SecureSession session, + Action action) +
Runs the event listeners before an action is run
+
+ +
  • + + +

    Uses of Action in edu.harvard.hms.dbmi.bd2k.irct.event.action

    + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type Action 
    Modifier and TypeMethod and Description
    voidBeforeAction.fire(SecureSession session, + Action action) 
    voidAfterAction.fire(SecureSession session, + Action action) 
    +
  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionStatus.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionStatus.html index 8a0fc4f..1dc5fe9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionStatus.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionStatus.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.action.ActionStatus - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionUtilities.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionUtilities.html index 594d54e..1d4a23b 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionUtilities.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/ActionUtilities.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.action.ActionUtilities - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Executable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Executable.html deleted file mode 100644 index 81ec387..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/Executable.html +++ /dev/null @@ -1,272 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.action.Executable - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.action.ProcessExecutable

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    • Summary: 
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    edu.harvard.hms.dbmi.bd2k.irct.action.join
    -

    Class FullOuterJoin

    -
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    • java.lang.Object
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      • edu.harvard.hms.dbmi.bd2k.irct.action.join.FullOuterJoin
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      All Implemented Interfaces:
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      Action, JoinAction
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      public class FullOuterJoin
-extends java.lang.Object
-implements JoinAction
      -
      Performs a full outer join between two result sets that implements the - Joinable interface - - NOTE: Currently returns a MemoryResultSet which may limit the size of joins - that can be performed
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
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        Constructor Summary

        - - - - - - - - -
        Constructors 
        Constructor and Description
        FullOuterJoin() 
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        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        ResultSetgetResults() -
        Gets the results
        -
        java.lang.StringgetType() -
        Returns the join type
        -
        voidrun() -
        Runs the given action
        -
        voidsetJoins(Joinable... joinables) -
        Sets the joinable resultSets that are to be combined and joins them.
        -
        voidsetup(java.util.Map<java.lang.String,java.lang.String> parameters) -
        Sets up the join with the given parameters.
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSONObject representation of the object.
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSONObject representation of the object.
        -
        -
          -
        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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        Constructor Detail

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          FullOuterJoin

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          public FullOuterJoin()
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        Method Detail

        - - - -
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          setup

          -
          public void setup(java.util.Map<java.lang.String,java.lang.String> parameters)
          -
          Description copied from interface: JoinAction
          -
          Sets up the join with the given parameters.
          -
          -
          Specified by:
          -
          setup in interface JoinAction
          -
          Parameters:
          -
          parameters - Join Parameters
          -
          -
          • -
        - - - -
          -
        • -

          setJoins

          -
          public void setJoins(Joinable... joinables)
-              throws java.lang.Exception
          -
          Description copied from interface: JoinAction
          -
          Sets the joinable resultSets that are to be combined and joins them. The - results of these joins can then be retrieved with the getResults() - method.
          -
          -
          Specified by:
          -
          setJoins in interface JoinAction
          -
          Parameters:
          -
          joinables - All RrsultSets that are to be joined
          -
          Throws:
          -
          java.lang.Exception - An exception occurred joining the resultSets
          -
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        - - - -
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          run

          -
          public void run()
          -
          Description copied from interface: Action
          -
          Runs the given action
          -
          -
          Specified by:
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          run in interface Action
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        - - - -
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          getResults

          -
          public ResultSet getResults()
          -
          Description copied from interface: Action
          -
          Gets the results
          -
          -
          Specified by:
          -
          getResults in interface Action
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          Returns:
          -
          Results ResultSet
          -
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          • -
        - - - -
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          getType

          -
          public java.lang.String getType()
          -
          Description copied from interface: JoinAction
          -
          Returns the join type
          -
          -
          Specified by:
          -
          getType in interface JoinAction
          -
          Returns:
          -
          Join Type
          -
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        - - - -
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          toJson

          -
          public javax.json.JsonObject toJson()
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
          -
          -
          Specified by:
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          toJson in interface JoinAction
          -
          Returns:
          -
          JSON Representation
          -
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          toJson

          -
          public javax.json.JsonObject toJson(int depth)
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Parameters:
          -
          depth - Depth to travel
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          Returns:
          -
          JSON Representation
          -
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/InnerJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/InnerJoin.html deleted file mode 100644 index 1389e54..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/InnerJoin.html +++ /dev/null @@ -1,442 +0,0 @@ - - - - - -InnerJoin - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.action.join
    -

    Class InnerJoin

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    • java.lang.Object
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      • edu.harvard.hms.dbmi.bd2k.irct.action.join.InnerJoin
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      All Implemented Interfaces:
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      Action, JoinAction
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      public class InnerJoin
-extends java.lang.Object
-implements JoinAction
      -
      Performs a inner join between two result sets that implements the - Joinable interface - - NOTE: Currently returns a MemoryResultSet which may limit the size of joins - that can be performed
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
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        Constructor Summary

        - - - - - - - - -
        Constructors 
        Constructor and Description
        InnerJoin() 
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        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        ResultSetgetResults() -
        Gets the results
        -
        java.lang.StringgetType() -
        Returns the join type
        -
        voidrun() -
        Runs the given action
        -
        voidsetJoins(Joinable... joinables) -
        Sets the joinable resultSets that are to be combined and joins them.
        -
        voidsetup(java.util.Map<java.lang.String,java.lang.String> parameters) -
        Sets up the join with the given parameters.
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSONObject representation of the object.
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSONObject representation of the object.
        -
        -
          -
        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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        Constructor Detail

        - - - -
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          InnerJoin

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          public InnerJoin()
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        Method Detail

        - - - -
          -
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          setup

          -
          public void setup(java.util.Map<java.lang.String,java.lang.String> parameters)
          -
          Description copied from interface: JoinAction
          -
          Sets up the join with the given parameters.
          -
          -
          Specified by:
          -
          setup in interface JoinAction
          -
          Parameters:
          -
          parameters - Join Parameters
          -
          -
          • -
        - - - -
          -
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          setJoins

          -
          public void setJoins(Joinable... joinables)
-              throws java.lang.Exception
          -
          Description copied from interface: JoinAction
          -
          Sets the joinable resultSets that are to be combined and joins them. The - results of these joins can then be retrieved with the getResults() - method.
          -
          -
          Specified by:
          -
          setJoins in interface JoinAction
          -
          Parameters:
          -
          joinables - All RrsultSets that are to be joined
          -
          Throws:
          -
          java.lang.Exception - An exception occurred joining the resultSets
          -
          -
          • -
        - - - -
          -
        • -

          run

          -
          public void run()
          -
          Description copied from interface: Action
          -
          Runs the given action
          -
          -
          Specified by:
          -
          run in interface Action
          -
          -
          • -
        - - - -
          -
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          getResults

          -
          public ResultSet getResults()
          -
          Description copied from interface: Action
          -
          Gets the results
          -
          -
          Specified by:
          -
          getResults in interface Action
          -
          Returns:
          -
          Results ResultSet
          -
          -
          • -
        - - - -
          -
        • -

          getType

          -
          public java.lang.String getType()
          -
          Description copied from interface: JoinAction
          -
          Returns the join type
          -
          -
          Specified by:
          -
          getType in interface JoinAction
          -
          Returns:
          -
          Join Type
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson()
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson(int depth)
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/JoinAction.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/JoinAction.html deleted file mode 100644 index 3f4c8ae..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/JoinAction.html +++ /dev/null @@ -1,341 +0,0 @@ - - - - - -JoinAction - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.action.join
    -

    Interface JoinAction

    -
    -
    -
    -
      -
    • -
      -
      All Superinterfaces:
      -
      Action
      -
      -
      -
      All Known Implementing Classes:
      -
      FullOuterJoin, InnerJoin, LeftOuterJoin, RightOuterJoin
      -
      -
      -
      -
      public interface JoinAction
-extends Action
      -
      The JoinAction interface extends the Action interface for Joins. All joins - must implement this interface.
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
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      • -
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      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Abstract Methods 
        Modifier and TypeMethod and Description
        java.lang.StringgetType() -
        Returns the join type
        -
        voidsetJoins(Joinable... joinables) -
        Sets the joinable resultSets that are to be combined and joins them.
        -
        voidsetup(java.util.Map<java.lang.String,java.lang.String> parameters) -
        Sets up the join with the given parameters.
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSONObject representation of the object.
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSONObject representation of the object.
        -
        - -
        • -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Method Detail

        - - - -
          -
        • -

          setup

          -
          void setup(java.util.Map<java.lang.String,java.lang.String> parameters)
          -
          Sets up the join with the given parameters.
          -
          -
          Parameters:
          -
          parameters - Join Parameters
          -
          -
          • -
        - - - -
          -
        • -

          setJoins

          -
          void setJoins(Joinable... joinables)
-       throws java.lang.Exception
          -
          Sets the joinable resultSets that are to be combined and joins them. The - results of these joins can then be retrieved with the getResults() - method.
          -
          -
          Parameters:
          -
          joinables - All RrsultSets that are to be joined
          -
          Throws:
          -
          java.lang.Exception - An exception occurred joining the resultSets
          -
          -
          • -
        - - - -
          -
        • -

          getType

          -
          java.lang.String getType()
          -
          Returns the join type
          -
          -
          Returns:
          -
          Join Type
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          javax.json.JsonObject toJson()
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
          -
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          javax.json.JsonObject toJson(int depth)
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
          -
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        -
        • -
      -
      • -
    -
    -
    - - -
    - - -
    Skip navigation links
    - - - - -
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    - -
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    • Summary: 
      • -
    • Nested | 
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    • Detail: 
      • -
    • Field | 
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/LeftOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/LeftOuterJoin.html deleted file mode 100644 index 8072017..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/LeftOuterJoin.html +++ /dev/null @@ -1,442 +0,0 @@ - - - - - -LeftOuterJoin - - - - - - - - -
    - - -
    Skip navigation links
    - - - - -
    -
    - - - -
    - -
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    • Summary: 
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      • -
    • Method
      • -
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    - - -
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    -
    edu.harvard.hms.dbmi.bd2k.irct.action.join
    -

    Class LeftOuterJoin

    -
    -
    -
      -
    • java.lang.Object
      • -
    • -
        -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.LeftOuterJoin
        • -
      -
      • -
    -
    -
      -
    • -
      -
      All Implemented Interfaces:
      -
      Action, JoinAction
      -
      -
      -
      -
      public class LeftOuterJoin
-extends java.lang.Object
-implements JoinAction
      -
      Performs a left outer join between two result sets that implements the - Joinable interface - - NOTE: Currently returns a MemoryResultSet which may limit the size of joins - that can be performed
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Constructor Summary

        - - - - - - - - -
        Constructors 
        Constructor and Description
        LeftOuterJoin() 
        -
        • -
      - -
        -
      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        ResultSetgetResults() -
        Gets the results
        -
        java.lang.StringgetType() -
        Returns the join type
        -
        voidrun() -
        Runs the given action
        -
        voidsetJoins(Joinable... joinables) -
        Sets the joinable resultSets that are to be combined and joins them.
        -
        voidsetup(java.util.Map<java.lang.String,java.lang.String> parameters) -
        Sets up the join with the given parameters.
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSONObject representation of the object.
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSONObject representation of the object.
        -
        -
          -
        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
          • -
        -
        • -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Constructor Detail

        - - - -
          -
        • -

          LeftOuterJoin

          -
          public LeftOuterJoin()
          -
          • -
        -
        • -
      - -
        -
      • - - -

        Method Detail

        - - - -
          -
        • -

          setup

          -
          public void setup(java.util.Map<java.lang.String,java.lang.String> parameters)
          -
          Description copied from interface: JoinAction
          -
          Sets up the join with the given parameters.
          -
          -
          Specified by:
          -
          setup in interface JoinAction
          -
          Parameters:
          -
          parameters - Join Parameters
          -
          -
          • -
        - - - -
          -
        • -

          setJoins

          -
          public void setJoins(Joinable... joinables)
-              throws java.lang.Exception
          -
          Description copied from interface: JoinAction
          -
          Sets the joinable resultSets that are to be combined and joins them. The - results of these joins can then be retrieved with the getResults() - method.
          -
          -
          Specified by:
          -
          setJoins in interface JoinAction
          -
          Parameters:
          -
          joinables - All RrsultSets that are to be joined
          -
          Throws:
          -
          java.lang.Exception - An exception occurred joining the resultSets
          -
          -
          • -
        - - - -
          -
        • -

          run

          -
          public void run()
          -
          Description copied from interface: Action
          -
          Runs the given action
          -
          -
          Specified by:
          -
          run in interface Action
          -
          -
          • -
        - - - -
          -
        • -

          getResults

          -
          public ResultSet getResults()
          -
          Description copied from interface: Action
          -
          Gets the results
          -
          -
          Specified by:
          -
          getResults in interface Action
          -
          Returns:
          -
          Results ResultSet
          -
          -
          • -
        - - - -
          -
        • -

          getType

          -
          public java.lang.String getType()
          -
          Description copied from interface: JoinAction
          -
          Returns the join type
          -
          -
          Specified by:
          -
          getType in interface JoinAction
          -
          Returns:
          -
          Join Type
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson()
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson(int depth)
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        -
        • -
      -
      • -
    -
    -
    - - -
    - - -
    Skip navigation links
    - - - - -
    -
    - - - -
    - -
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      -
    • Summary: 
      • -
    • Nested | 
      • -
    • Field | 
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      • -
    • Method
      • -
    - -
    - - -
    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/RightOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/RightOuterJoin.html deleted file mode 100644 index 659b494..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/RightOuterJoin.html +++ /dev/null @@ -1,442 +0,0 @@ - - - - - -RightOuterJoin - - - - - - - - -
    - - -
    Skip navigation links
    - - - - -
    -
    - - - -
    - -
    -
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    • Summary: 
      • -
    • Nested | 
      • -
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      • -
    • Method
      • -
    - -
    - - -
    - - -
    -
    edu.harvard.hms.dbmi.bd2k.irct.action.join
    -

    Class RightOuterJoin

    -
    -
    -
      -
    • java.lang.Object
      • -
    • -
        -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.RightOuterJoin
        • -
      -
      • -
    -
    -
      -
    • -
      -
      All Implemented Interfaces:
      -
      Action, JoinAction
      -
      -
      -
      -
      public class RightOuterJoin
-extends java.lang.Object
-implements JoinAction
      -
      Performs a right outer join between two result sets that implements the - Joinable interface - - NOTE: Currently returns a MemoryResultSet which may limit the size of joins - that can be performed
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Constructor Summary

        - - - - - - - - -
        Constructors 
        Constructor and Description
        RightOuterJoin() 
        -
        • -
      - -
        -
      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        ResultSetgetResults() -
        Gets the results
        -
        java.lang.StringgetType() -
        Returns the join type
        -
        voidrun() -
        Runs the given action
        -
        voidsetJoins(Joinable... joinables) -
        Sets the joinable resultSets that are to be combined and joins them.
        -
        voidsetup(java.util.Map<java.lang.String,java.lang.String> parameters) -
        Sets up the join with the given parameters.
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSONObject representation of the object.
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSONObject representation of the object.
        -
        -
          -
        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
          • -
        -
        • -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Constructor Detail

        - - - -
          -
        • -

          RightOuterJoin

          -
          public RightOuterJoin()
          -
          • -
        -
        • -
      - -
        -
      • - - -

        Method Detail

        - - - -
          -
        • -

          setup

          -
          public void setup(java.util.Map<java.lang.String,java.lang.String> parameters)
          -
          Description copied from interface: JoinAction
          -
          Sets up the join with the given parameters.
          -
          -
          Specified by:
          -
          setup in interface JoinAction
          -
          Parameters:
          -
          parameters - Join Parameters
          -
          -
          • -
        - - - -
          -
        • -

          setJoins

          -
          public void setJoins(Joinable... joinables)
-              throws java.lang.Exception
          -
          Description copied from interface: JoinAction
          -
          Sets the joinable resultSets that are to be combined and joins them. The - results of these joins can then be retrieved with the getResults() - method.
          -
          -
          Specified by:
          -
          setJoins in interface JoinAction
          -
          Parameters:
          -
          joinables - All RrsultSets that are to be joined
          -
          Throws:
          -
          java.lang.Exception - An exception occurred joining the resultSets
          -
          -
          • -
        - - - -
          -
        • -

          run

          -
          public void run()
          -
          Description copied from interface: Action
          -
          Runs the given action
          -
          -
          Specified by:
          -
          run in interface Action
          -
          -
          • -
        - - - -
          -
        • -

          getResults

          -
          public ResultSet getResults()
          -
          Description copied from interface: Action
          -
          Gets the results
          -
          -
          Specified by:
          -
          getResults in interface Action
          -
          Returns:
          -
          Results ResultSet
          -
          -
          • -
        - - - -
          -
        • -

          getType

          -
          public java.lang.String getType()
          -
          Description copied from interface: JoinAction
          -
          Returns the join type
          -
          -
          Specified by:
          -
          getType in interface JoinAction
          -
          Returns:
          -
          Join Type
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson()
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson(int depth)
          -
          Description copied from interface: JoinAction
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
          -
          -
          Specified by:
          -
          toJson in interface JoinAction
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        -
        • -
      -
      • -
    -
    -
    - - -
    - - -
    Skip navigation links
    - - - - -
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    - -
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    • Summary: 
      • -
    • Nested | 
      • -
    • Field | 
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    • Constr | 
      • -
    • Method
      • -
    - -
    - - -
    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/JoinAction.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/JoinAction.html deleted file mode 100644 index 1678783..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/JoinAction.html +++ /dev/null @@ -1,274 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction - - - - - - - - -
    - - -
    Skip navigation links
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    • Prev
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    Uses of Interface
    edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction

    -
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-frame.html deleted file mode 100644 index 98aa19c..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-frame.html +++ /dev/null @@ -1,27 +0,0 @@ - - - - - -edu.harvard.hms.dbmi.bd2k.irct.action.join - - - - - -

    edu.harvard.hms.dbmi.bd2k.irct.action.join

    -
    -

    Interfaces

    - -

    Classes

    - -
    - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-tree.html deleted file mode 100644 index 333c87f..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-tree.html +++ /dev/null @@ -1,148 +0,0 @@ - - - - - -edu.harvard.hms.dbmi.bd2k.irct.action.join Class Hierarchy - - - - - - - - -
    - - -
    Skip navigation links
    - - - - -
    -
    - - - -
    - -
    - - -
    - -
    -

    Hierarchy For Package edu.harvard.hms.dbmi.bd2k.irct.action.join

    -Package Hierarchies: - -
    -
    -

    Class Hierarchy

    -
      -
    • java.lang.Object -
        -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.FullOuterJoin (implements edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction)
        • -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.InnerJoin (implements edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction)
        • -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.LeftOuterJoin (implements edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction)
        • -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.RightOuterJoin (implements edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction)
        • -
      -
      • -
    -

    Interface Hierarchy

    -
      -
    • edu.harvard.hms.dbmi.bd2k.irct.action.Action -
        -
      • edu.harvard.hms.dbmi.bd2k.irct.action.join.JoinAction
        • -
      -
      • -
    -
    - -
    - - -
    Skip navigation links
    - - - - -
    -
    - - - -
    - -
    - - -
    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-frame.html index 5b649de..8a58385 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.action - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-summary.html index 9003781..e4df591 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.action - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-tree.html index a95b8ee..1e4de48 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.action Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-use.html index 48aa70a..ce38bb4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.action - + @@ -87,6 +87,14 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -120,6 +128,42 @@

    • +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.action used by edu.harvard.hms.dbmi.bd2k.irct.event 
    Class and Description
    Action +
    The action interface provides a set of basic functionality that all actions must + accomplish.
    +
    +
    • +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.action used by edu.harvard.hms.dbmi.bd2k.irct.event.action 
    Class and Description
    Action +
    The action interface provides a set of basic functionality that all actions must + accomplish.
    +
    +
  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/ExecuteProcess.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/ExecuteProcess.html deleted file mode 100644 index a4c8557..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/ExecuteProcess.html +++ /dev/null @@ -1,387 +0,0 @@ - - - - - -ExecuteProcess - - - - - - - - -
    - - -
    Skip navigation links
    - - - - -
    -
    - - - -
    - -
    -
    -
      -
    • Summary: 
      • -
    • Nested | 
      • -
    • Field | 
      • -
    • Constr | 
      • -
    • Method
      • -
    - -
    - - -
    - - -
    -
    edu.harvard.hms.dbmi.bd2k.irct.action.process
    -

    Class ExecuteProcess

    -
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      • edu.harvard.hms.dbmi.bd2k.irct.action.process.ExecuteProcess
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      All Implemented Interfaces:
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      Action, ProcessAction
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      public class ExecuteProcess
-extends java.lang.Object
-implements ProcessAction
      -
      Implements the ProcessAction interface to run a process
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      Author:
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      Jeremy R. Easton-Marks
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        Constructor Detail

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          ExecuteProcess

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    edu.harvard.hms.dbmi.bd2k.irct.action.process

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    Interfaces

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    - -
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    edu.harvard.hms.dbmi.bd2k.irct.action.query
    -

    Class ExecuteQuery

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    • java.lang.Object
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      • edu.harvard.hms.dbmi.bd2k.irct.action.query.ExecuteQuery
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      All Implemented Interfaces:
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      Action, QueryAction
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      public class ExecuteQuery
-extends java.lang.Object
-implements QueryAction
      -
      Implements the QueryAction interface to run a query on a specific instance
      -
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      Author:
      -
      Jeremy R. Easton-Marks
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        Constructor Summary

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        Constructors 
        Constructor and Description
        ExecuteQuery() 
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        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        QuerygetQuery() -
        Returns the query to be run
        -
        ResultSetgetResults() -
        Gets the results
        -
        voidrun() -
        Runs the given action
        -
        voidsetQuery(Query query) -
        Sets the query to be run
        -
        voidsetup(Resource resource, - Query query) -
        Sets up a query to be run on a specific resource
        -
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          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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    edu.harvard.hms.dbmi.bd2k.irct.action.query

    -
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    Interfaces

    - -

    Classes

    - -
    - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/package-use.html deleted file mode 100644 index 24601a5..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/package-use.html +++ /dev/null @@ -1,159 +0,0 @@ - - - - - -Uses of Package edu.harvard.hms.dbmi.bd2k.irct.action.query - - - - - - - - -
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    Method Summary

    java.util.List<Entity> -searchForOntology(Resource resource, - Entity resourcePath, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
    Searches a resource for a given ontology term from a given ontology.
    - - - -java.util.List<Entity> -searchForTerm(Resource resource, +searchForTerm(Resource resource, Entity resourcePath, - java.lang.String searchTerm, + FindInformationInterface findInformation, SecureSession session)
    Searches a resource for a given searchTerm.
    - + java.util.List<Entity> traversePath(Resource resource, Entity resourcePath, @@ -251,7 +241,7 @@

    traversePath

    • - + - - - -
      -
    • -

      searchForOntology

      -
      public java.util.List<Entity> searchForOntology(Resource resource,
-                                                Entity resourcePath,
-                                                java.lang.String ontologyType,
-                                                java.lang.String ontologyTerm,
-                                                SecureSession session)
-                                         throws ResourceInterfaceException
      -
      Searches a resource for a given ontology term from a given ontology. If - the resource is null it searches all resources for that term regardless - of path.
      -
      -
      Parameters:
      -
      resource - Resource
      -
      resourcePath - Resource Path
      -
      ontologyType - Ontology Type
      -
      ontologyTerm - Ontology Term
      -
      session - Session to run it in
      -
      Returns:
      -
      Paths
      -
      Throws:
      -
      ResourceInterfaceException - A resource interface exception occurred
      -
      -
      • -
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ProcessController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ProcessController.html index 3889237..5853e08 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ProcessController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ProcessController.html @@ -2,9 +2,9 @@ - + ProcessController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/QueryController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/QueryController.html index 4d88b5d..0908f1e 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/QueryController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/QueryController.html @@ -2,9 +2,9 @@ - + QueryController - + @@ -152,8 +152,11 @@

    Method Summary

    Method and Description -void -addJoinClause() +java.lang.Long +addJoinClause(java.lang.Long clauseId, + Resource resource, + JoinType joinType, + java.util.Map<java.lang.String,java.lang.String> joinFields)
    Adds a join clause
    @@ -336,16 +339,20 @@

    addSelectClause

    - +

    • addJoinClause

      -
      public void addJoinClause()
-                   throws QueryException
      +
      public java.lang.Long addJoinClause(java.lang.Long clauseId,
+                                    Resource resource,
+                                    JoinType joinType,
+                                    java.util.Map<java.lang.String,java.lang.String> joinFields)
+                             throws QueryException
      Adds a join clause
      +
      Returns:
      Throws:
      QueryException - An occurred adding the join clause
      diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResourceController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResourceController.html index 1774384..ced7a6c 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResourceController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResourceController.html @@ -2,9 +2,9 @@ - + ResourceController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResultController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResultController.html index 4625c5b..c4e196a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResultController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/ResultController.html @@ -2,9 +2,9 @@ - + ResultController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/SecurityController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/SecurityController.html index 34ec6e0..25d7971 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/SecurityController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/SecurityController.html @@ -2,9 +2,9 @@ - + SecurityController - + @@ -111,7 +111,7 @@

      Class SecurityController


      public class SecurityController
 extends java.lang.Object
      -
      A stateful controller for managing security.
      +
      A stateless controller for managing security.
      Author:
      Jeremy R. Easton-Marks
      diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ExecutionController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ExecutionController.html index 676b212..26d2045 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ExecutionController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ExecutionController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.ExecutionController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/JoinController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/JoinController.html index dc58ef5..fdccc9f 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/JoinController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/JoinController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.JoinController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/PathController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/PathController.html index 4a44fa2..cc23171 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/PathController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/PathController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.PathController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ProcessController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ProcessController.html index f5c92bf..9798e19 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ProcessController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ProcessController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.ProcessController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/QueryController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/QueryController.html index b0458bf..072f280 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/QueryController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/QueryController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.QueryController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResourceController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResourceController.html index 84a9cb3..ac17fb7 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResourceController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResourceController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.ResourceController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResultController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResultController.html index bbf281e..198c1df 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResultController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/ResultController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.ResultController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/SecurityController.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/SecurityController.html index 5390a5f..6eab5a4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/SecurityController.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/class-use/SecurityController.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.controller.SecurityController - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-frame.html index 6cd2a0c..e8e0313 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.controller - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-summary.html index eeef8b9..7450925 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.controller - + @@ -132,7 +132,7 @@

      Package edu.harvard.hms.dbmi.bd2k.irct.co SecurityController -
      A stateful controller for managing security.
      +
      A stateless controller for managing security.
      diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-tree.html index 1d04999..58e4993 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.controller Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-use.html index 0cc3a75..37fa1eb 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/controller/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.controller - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/CSVTabularDataConverter.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/CSVTabularDataConverter.html deleted file mode 100644 index bc54100..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/CSVTabularDataConverter.html +++ /dev/null @@ -1,385 +0,0 @@ - - - - - -CSVTabularDataConverter - - - - - - - - -
      - - -
      Skip navigation links
      - - - - -
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      - - - -
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      • Summary: 
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        • -
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      - - -
      - - -
      -
      edu.harvard.hms.dbmi.bd2k.irct.dataconverter
      -

      Class CSVTabularDataConverter

      -
      -
      -
        -
      • java.lang.Object
        • -
      • -
          -
        • edu.harvard.hms.dbmi.bd2k.irct.dataconverter.CSVTabularDataConverter
          • -
        -
        • -
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        A data converter that returns a CSV Stream
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          javax.ws.rs.core.StreamingOutputcreateStream(Result result) -
          Returns an output stream
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          Returns the file extension that is typically associated with a file of that type
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          Returns the media type the converter supports
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          Returns the name of the converter
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          Returns the data type the data converter supports
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      Class JSONTabularDataConverter

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        public class JSONTabularDataConverter
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        A data converter that returns a JSON stream
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          javax.ws.rs.core.StreamingOutputcreateStream(Result result) -
          Returns an output stream
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          java.lang.StringgetFileExtension() -
          Returns the file extension that is typically associated with a file of that type
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          java.lang.StringgetMediaType() -
          Returns the media type the converter supports
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          Returns the name of the converter
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          Returns the data type the data converter supports
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        @@ -99,10 +99,6 @@

        Interface ResultDataConv
          diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/ResultDataStream.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/ResultDataStream.html index a8d46e1..aa3e893 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/ResultDataStream.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/ResultDataStream.html @@ -2,9 +2,9 @@ - + ResultDataStream - + @@ -50,7 +50,7 @@
          • Frames
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            getFileExtension

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              • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/XMLTabularDataConverter.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/XMLTabularDataConverter.html deleted file mode 100644 index 77d478c..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/XMLTabularDataConverter.html +++ /dev/null @@ -1,385 +0,0 @@ - - - - - -XMLTabularDataConverter - - - - - - - - -
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              Class XMLTabularDataConverter

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                public class XMLTabularDataConverter
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                A data converter that returns an XML Stream
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                Jeremy R. Easton-Marks
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                  javax.ws.rs.core.StreamingOutputcreateStream(Result result) -
                  Returns an output stream
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                  Returns the file extension that is typically associated with a file of that type
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                  java.lang.StringgetMediaType() -
                  Returns the media type the converter supports
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                  Returns the name of the converter
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                  ResultDataTypegetResultDataType() -
                  Returns the data type the data converter supports
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              Class XSLXTabularDataConverter

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                public class XSLXTabularDataConverter
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                A data converter that returns a XSLX Stream
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                Jeremy R. Easton-Marks
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                  javax.ws.rs.core.StreamingOutputcreateStream(Result result) -
                  Returns an output stream
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                  java.lang.StringgetFileExtension() -
                  Returns the file extension that is typically associated with a file of that type
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                  java.lang.StringgetMediaType() -
                  Returns the media type the converter supports
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                  Returns the name of the converter
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                  Returns the data type the data converter supports
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                -edu.harvard.hms.dbmi.bd2k.irct.dataconverter -  - - edu.harvard.hms.dbmi.bd2k.irct.model.result   - + edu.harvard.hms.dbmi.bd2k.irct.util.converter   @@ -124,44 +120,6 @@

              Uses of - - -

              Uses of ResultDataConverter in edu.harvard.hms.dbmi.bd2k.irct.dataconverter

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              Classes in edu.harvard.hms.dbmi.bd2k.irct.dataconverter that implement ResultDataConverter 
              Modifier and TypeClass and Description
              class CSVTabularDataConverter -
              A data converter that returns a CSV Stream
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              class JSONTabularDataConverter -
              A data converter that returns a JSON stream
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              class XMLTabularDataConverter -
              A data converter that returns an XML Stream
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              class XSLXTabularDataConverter -
              A data converter that returns a XSLX Stream
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            • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/ResultDataStream.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/ResultDataStream.html index 65c7a70..e7c3a58 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/ResultDataStream.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/ResultDataStream.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.dataconverter.ResultDataStream - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/XMLTabularDataConverter.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/XMLTabularDataConverter.html deleted file mode 100644 index 6b008dd..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/class-use/XMLTabularDataConverter.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.dataconverter.XMLTabularDataConverter - - - - - - - - -
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              - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-frame.html index 9209eaf..cfb5bb6 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.dataconverter - + @@ -17,11 +17,7 @@

              Interfaces

            Classes

            diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-summary.html index 1f08482..71d4c41 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.dataconverter - + @@ -44,7 +44,7 @@
            • Frames
              • @@ -100,35 +100,11 @@

              Package edu.harvard.hms.dbmi.bd2k.irct.da -CSVTabularDataConverter - -
              A data converter that returns a CSV Stream
              - - - -JSONTabularDataConverter - -
              A data converter that returns a JSON stream
              - - - ResultDataStream
              An object that contains a data stream and information about a result
              - -XMLTabularDataConverter - -
              A data converter that returns an XML Stream
              - - - -XSLXTabularDataConverter - -
              A data converter that returns a XSLX Stream
              - - @@ -156,7 +132,7 @@

              Package edu.harvard.hms.dbmi.bd2k.irct.da
              • Frames
                • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-tree.html index 958cb75..ac40759 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.dataconverter Class Hierarchy - + @@ -44,7 +44,7 @@
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                  Class Hierarchy

                  @@ -116,7 +112,7 @@

                  Interface Hierarchy

                  • Frames
                    • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-use.html index 0f2d393..bf41436 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/dataconverter/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.dataconverter - + @@ -91,14 +91,10 @@

                      -edu.harvard.hms.dbmi.bd2k.irct.dataconverter -  - - edu.harvard.hms.dbmi.bd2k.irct.model.result   - + edu.harvard.hms.dbmi.bd2k.irct.util.converter   @@ -139,23 +135,6 @@

                    - - - - - - - - - - - - -
                    Classes in edu.harvard.hms.dbmi.bd2k.irct.dataconverter used by edu.harvard.hms.dbmi.bd2k.irct.dataconverter 
                    Class and Description
                    ResultDataConverter -
                    A base interface that is implemented to create a set of data converters for output from the IRCT format
                    -
                    -
                  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameter.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/EventConverterImplementation.html similarity index 56% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameter.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/EventConverterImplementation.html index 1b1e57b..7ef99cc 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameter.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/EventConverterImplementation.html @@ -2,17 +2,17 @@ - -IRCTProcessParameter - - - + +EventConverterImplementation + + + @@ -12,13 +12,13 @@ + + + + + +
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                    Skip navigation links
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                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event
                    +

                    Class IRCTEventListener

                    +
                    +
                    +
                      +
                    • java.lang.Object
                      • +
                    • +
                        +
                      • edu.harvard.hms.dbmi.bd2k.irct.event.IRCTEventListener
                        • +
                      +
                      • +
                    +
                    +
                      +
                    • +
                      +
                      +
                      public class IRCTEventListener
+extends java.lang.Object
                      +
                      Manages the event listeners
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    +
                      +
                    • + +
                        +
                      • + + +

                        Constructor Detail

                        + + + +
                          +
                        • +

                          IRCTEventListener

                          +
                          public IRCTEventListener()
                          +
                          • +
                        +
                        • +
                      + +
                        +
                      • + + +

                        Method Detail

                        + + + +
                          +
                        • +

                          init

                          +
                          public void init()
                          +
                          Initiates the even listener
                          +
                          • +
                        + + + +
                          +
                        • +

                          registerListener

                          +
                          public void registerListener(EventConverterImplementation eci)
                          +
                          Registers a new event listener
                          +
                          +
                          Parameters:
                          +
                          irctEvent - Listener
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterAction

                          +
                          public void afterAction(SecureSession session,
+                        Action action)
                          +
                          Runs the event listeners after an action is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          action - Action
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterExecutionPlan

                          +
                          public void afterExecutionPlan(SecureSession session,
+                               Executable executable)
                          +
                          Runs the event listeners after an execution plan is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          executable - Execution Plan
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterJoin

                          +
                          public void afterJoin(SecureSession session,
+                      IRCTJoin joinType)
                          +
                          Runs the event listeners after a join is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          joinType - Type of Join
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterProcess

                          +
                          public void afterProcess(SecureSession session,
+                         IRCTProcess process)
                          +
                          Runs the event listeners after a process is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          process - Process
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterQuery

                          +
                          public void afterQuery(SecureSession session,
+                       Resource resource,
+                       Query query)
                          +
                          Runs the event listeners after a query is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          resource - Resource
                          +
                          query - Query
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterVisualization

                          +
                          public void afterVisualization()
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeAction

                          +
                          public void beforeAction(SecureSession session,
+                         Action action)
                          +
                          Runs the event listeners before an action is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          action - Action
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeExecutionPlan

                          +
                          public void beforeExecutionPlan(SecureSession session,
+                                Executable executable)
                          +
                          Runs the event listener before an execution plan is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          executable - Execution Plan
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeJoin

                          +
                          public void beforeJoin(SecureSession session,
+                       IRCTJoin joinType)
                          +
                          Runs the event listeners before a join is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          joinType - Join
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeProcess

                          +
                          public void beforeProcess(SecureSession session,
+                          IRCTProcess process)
                          +
                          Runs the event listeners before a process is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          process - Process
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeQuery

                          +
                          public void beforeQuery(SecureSession session,
+                        Resource resource,
+                        Query query)
                          +
                          Runs the event listeners before a query is run
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          resource - Resource
                          +
                          query - Query
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeVisualization

                          +
                          public void beforeVisualization()
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterGetResult

                          +
                          public void afterGetResult(Result result)
                          +
                          Runs the event listeners after a result is retrieved
                          +
                          +
                          Parameters:
                          +
                          result - Result
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterSaveResult

                          +
                          public void afterSaveResult(Result result)
                          +
                          Runs the event listers after a result is saved
                          +
                          +
                          Parameters:
                          +
                          result - Result
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeGetResult

                          +
                          public void beforeGetResult(User user,
+                            java.lang.Long resultId)
                          +
                          Runs the event listeners before a result is retrieved
                          +
                          +
                          Parameters:
                          +
                          user - User
                          +
                          resultId - Result
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeSaveResult

                          +
                          public void beforeSaveResult(Result result)
                          +
                          Runs the event listers before a result is saved
                          +
                          +
                          Parameters:
                          +
                          result - Result
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          beforeFind

                          +
                          public void beforeFind(Resource resource,
+                       Entity resourcePath,
+                       java.util.List<FindInformationInterface> findInformation,
+                       SecureSession session)
                          +
                          Runs the event listeners before a find is executed
                          +
                          +
                          Parameters:
                          +
                          resource - Resource
                          +
                          resourcePath - Path on the resource
                          +
                          findInformation - Information for the find
                          +
                          session - Session Information
                          +
                          +
                          • +
                        + + + +
                          +
                        • +

                          afterFind

                          +
                          public void afterFind(java.util.List<Entity> matches,
+                      FindInformationInterface findInformation,
+                      SecureSession session)
                          +
                          Runs the listeners after a find is executed
                          +
                          +
                          Parameters:
                          +
                          returns - A list of entities
                          +
                          findInformation - Information for the find
                          +
                          session - Session Information
                          +
                          +
                          • +
                        +
                        • +
                      +
                      • +
                    +
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                    Skip navigation links
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/QueryAction.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterAction.html similarity index 55% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/QueryAction.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterAction.html index a58a745..e270883 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/QueryAction.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterAction.html @@ -2,9 +2,9 @@ - -QueryAction - + +AfterAction + @@ -12,13 +12,13 @@ + + + + + +
                    + + +
                    Skip navigation links
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                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface AfterExecutionPlan

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterExecutionPlan
+extends IRCTEvent
                      +
                      An event listener that is run after an execution plan is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    +
                      +
                    • + +
                        +
                      • + + +

                        Method Detail

                        + + + +
                          +
                        • +

                          fire

                          +
                          void fire(SecureSession session,
+          Executable executable)
                          +
                          An action that is run after an execution plan is completed
                          +
                          +
                          Parameters:
                          +
                          session - Session
                          +
                          executable - Executable
                          +
                          +
                          • +
                        +
                        • +
                      +
                      • +
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                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterJoin.html new file mode 100644 index 0000000..9e9a16f --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterJoin.html @@ -0,0 +1,240 @@ + + + + + +AfterJoin + + + + + + + + +
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                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface AfterJoin

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterJoin
+extends IRCTEvent
                      +
                      An event listener that is run after a join is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
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                    + + +
                    Skip navigation links
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                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterProcess.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterProcess.html new file mode 100644 index 0000000..0a2c5af --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterProcess.html @@ -0,0 +1,240 @@ + + + + + +AfterProcess + + + + + + + + +
                    + + +
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                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface AfterProcess

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterProcess
+extends IRCTEvent
                      +
                      An event listener that is run after a process is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
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                    + + +
                    Skip navigation links
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                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterQuery.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterQuery.html new file mode 100644 index 0000000..1392290 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterQuery.html @@ -0,0 +1,242 @@ + + + + + +AfterQuery + + + + + + + + +
                    + + +
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                    + + + +
                    + +
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                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface AfterQuery

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterQuery
+extends IRCTEvent
                      +
                      An event listener that is run after a query is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
                    + + +
                    + + +
                    Skip navigation links
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                    • Detail: 
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                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterVisualization.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterVisualization.html new file mode 100644 index 0000000..011883a --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/AfterVisualization.html @@ -0,0 +1,198 @@ + + + + + +AfterVisualization + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
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                      +
                    • Detail: 
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                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface AfterVisualization

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterVisualization
+extends IRCTEvent
                      +
                      An event listener that is run after a result a visualization is created
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    +
                      +
                    • + +
                        +
                      • + + +

                        Method Summary

                        +
                          +
                        • + + +

                          Methods inherited from interface edu.harvard.hms.dbmi.bd2k.irct.event.IRCTEvent

                          +init
                          • +
                        +
                        • +
                      +
                      • +
                    +
                    +
                    + + +
                    + + +
                    Skip navigation links
                    + + + + +
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                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeAction.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeAction.html new file mode 100644 index 0000000..e43354d --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeAction.html @@ -0,0 +1,240 @@ + + + + + +BeforeAction + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
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                    + + + +
                    + +
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                      +
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                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface BeforeAction

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeAction
+extends IRCTEvent
                      +
                      An event listener that is run before an action is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
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                    + + +
                    + + +
                    Skip navigation links
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                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeExecutionPlan.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeExecutionPlan.html new file mode 100644 index 0000000..86c8b78 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeExecutionPlan.html @@ -0,0 +1,240 @@ + + + + + +BeforeExecutionPlan + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
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                      • +
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                    • Detail: 
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                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface BeforeExecutionPlan

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeExecutionPlan
+extends IRCTEvent
                      +
                      An event listener that is run before an execution plan is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
                    + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
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                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeJoin.html new file mode 100644 index 0000000..c817f9e --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeJoin.html @@ -0,0 +1,240 @@ + + + + + +BeforeJoin + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
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                    • Detail: 
                      • +
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                    • Method
                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface BeforeJoin

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeJoin
+extends IRCTEvent
                      +
                      An event listener that is run before a join is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
                    + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
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                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeProcess.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeProcess.html new file mode 100644 index 0000000..37065d5 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeProcess.html @@ -0,0 +1,240 @@ + + + + + +BeforeProcess + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
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                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
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                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface BeforeProcess

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeProcess
+extends IRCTEvent
                      +
                      An event listener that is run before a process is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
                    + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
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                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeQuery.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeQuery.html new file mode 100644 index 0000000..894cef4 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeQuery.html @@ -0,0 +1,242 @@ + + + + + +BeforeQuery + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
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                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
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                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface BeforeQuery

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeQuery
+extends IRCTEvent
                      +
                      An event listener that is run before a query is run
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    + +
                    +
                    + +
                    +
                    + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
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                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeVisualization.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeVisualization.html new file mode 100644 index 0000000..700cc6c --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/BeforeVisualization.html @@ -0,0 +1,198 @@ + + + + + +BeforeVisualization + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
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                    • Detail: 
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                    • Field | 
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                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.action
                    +

                    Interface BeforeVisualization

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeVisualization
+extends IRCTEvent
                      +
                      An event listener that is run before a visualization
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
                    +
                      +
                    • + +
                        +
                      • + + +

                        Method Summary

                        +
                          +
                        • + + +

                          Methods inherited from interface edu.harvard.hms.dbmi.bd2k.irct.event.IRCTEvent

                          +init
                          • +
                        +
                        • +
                      +
                      • +
                    +
                    +
                    + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
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                    + +
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                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
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                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
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                      • +
                    +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/RightOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/AfterAction.html similarity index 77% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/RightOuterJoin.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/AfterAction.html index 47801f9..12f4198 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/RightOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/AfterAction.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.action.join.RightOuterJoin - + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.action.AfterAction + @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ + + + + + +
                    + + +
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                    +

                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.action.AfterQuery

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.action.AfterQuery
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
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                      • +
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                    + +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/AfterVisualization.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/AfterVisualization.html new file mode 100644 index 0000000..a003ea9 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/AfterVisualization.html @@ -0,0 +1,124 @@ + + + + + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.action.AfterVisualization + + + + + + + + +
                    + + +
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                    + + + + +
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                    +

                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.action.AfterVisualization

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.action.AfterVisualization
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    +
                      +
                    • Prev
                      • +
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                      • +
                    + + +
                    + +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/FullOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeAction.html similarity index 78% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/FullOuterJoin.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeAction.html index 6755758..a529599 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/class-use/FullOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeAction.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.action.join.FullOuterJoin - + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeAction + @@ -12,7 +12,7 @@ + + + + + +
                    + + +
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                    + + + + +
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                      +
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                    + +
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                    + +
                    +

                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeExecutionPlan

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeExecutionPlan
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    +
                      +
                    • Prev
                      • +
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                      • +
                    + + +
                    + +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeJoin.html new file mode 100644 index 0000000..be69040 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeJoin.html @@ -0,0 +1,124 @@ + + + + + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeJoin + + + + + + + + +
                    + + +
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                    + + + + +
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                    +
                      +
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                    + +
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                    + +
                    +

                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeJoin

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeJoin
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    +
                      +
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                      • +
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                      • +
                    + + +
                    + +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/FileResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeProcess.html similarity index 78% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/FileResultSet.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeProcess.html index ca7517e..c7db940 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/FileResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeProcess.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.FileResultSet - + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeProcess + @@ -12,7 +12,7 @@ + + + + + +
                    + + +
                    Skip navigation links
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                    +

                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeQuery

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeQuery
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    +
                      +
                    • Prev
                      • +
                    • Next
                      • +
                    + + +
                    + +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeVisualization.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeVisualization.html new file mode 100644 index 0000000..910416f --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/class-use/BeforeVisualization.html @@ -0,0 +1,124 @@ + + + + + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeVisualization + + + + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    +
                      +
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                    + +
                    +

                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeVisualization

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.action.BeforeVisualization
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
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                      +
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                    + + +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-frame.html new file mode 100644 index 0000000..872e5c0 --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-frame.html @@ -0,0 +1,31 @@ + + + + + +edu.harvard.hms.dbmi.bd2k.irct.event.action + + + + + +

                    edu.harvard.hms.dbmi.bd2k.irct.event.action

                    +
                    +

                    Interfaces

                    + +
                    + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-summary.html similarity index 55% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-summary.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-summary.html index 4a55ec3..fe062b1 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/join/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-summary.html @@ -2,9 +2,9 @@ - -edu.harvard.hms.dbmi.bd2k.irct.action.join - + +edu.harvard.hms.dbmi.bd2k.irct.event.action + @@ -12,7 +12,7 @@ + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    + + +
                    + +
                    +

                    Hierarchy For Package edu.harvard.hms.dbmi.bd2k.irct.event.action

                    +Package Hierarchies: + +
                    +
                    +

                    Interface Hierarchy

                    + +
                    + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    + + +
                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/util/class-use/JsonUtilities.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-use.html similarity index 70% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/util/class-use/JsonUtilities.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-use.html index 11eef7b..620553a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/util/class-use/JsonUtilities.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/action/package-use.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.util.JsonUtilities - + +Uses of Package edu.harvard.hms.dbmi.bd2k.irct.event.action + @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ + + + + + +
                    + + +
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                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.IRCTEvent

                    +
                    +
                    + +
                    + +
                    + + +
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                    + + + + +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/BinaryTreeExecutable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/class-use/IRCTEventListener.html similarity index 58% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/BinaryTreeExecutable.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/class-use/IRCTEventListener.html index e718332..25df2f1 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/class-use/BinaryTreeExecutable.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/class-use/IRCTEventListener.html @@ -2,9 +2,9 @@ - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.action.BinaryTreeExecutable - + +Uses of Class edu.harvard.hms.dbmi.bd2k.irct.event.IRCTEventListener + @@ -12,7 +12,7 @@ + + + + + +
                    + + +
                    Skip navigation links
                    + + + + +
                    +
                    + + + +
                    + +
                    +
                    +
                      +
                    • Summary: 
                      • +
                    • Nested | 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                      +
                    • Detail: 
                      • +
                    • Field | 
                      • +
                    • Constr | 
                      • +
                    • Method
                      • +
                    +
                    + + +
                    + + +
                    +
                    edu.harvard.hms.dbmi.bd2k.irct.event.find
                    +

                    Interface AfterFind

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterFind
+extends IRCTEvent
                      +
                      An event listener that is run after a find is executed
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
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                    edu.harvard.hms.dbmi.bd2k.irct.event.find
                    +

                    Interface BeforeFind

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeFind
+extends IRCTEvent
                      +
                      An event listener that is run before a find is executed
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Row.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/find/class-use/AfterFind.html similarity index 78% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Row.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/find/class-use/AfterFind.html index 0ba9bb5..0264a67 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Row.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/find/class-use/AfterFind.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.Row - + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.find.AfterFind + @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ + + +

                    edu.harvard.hms.dbmi.bd2k.irct.event.find

                    +
                    +

                    Interfaces

                    + +
                    + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/find/package-summary.html similarity index 75% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/package-summary.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/find/package-summary.html index 97d0c03..8702ede 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/find/package-summary.html @@ -2,9 +2,9 @@ - -edu.harvard.hms.dbmi.bd2k.irct.model.action - + +edu.harvard.hms.dbmi.bd2k.irct.event.find + @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ + + +

                    edu.harvard.hms.dbmi.bd2k.irct.event

                    +
                    +

                    Interfaces

                    + +

                    Classes

                    + +
                    + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/package-summary.html similarity index 50% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/package-summary.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/package-summary.html index c4691f0..32c9a94 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/package-summary.html @@ -2,17 +2,17 @@ - -edu.harvard.hms.dbmi.bd2k.irct.model.query.predicate - - - + +edu.harvard.hms.dbmi.bd2k.irct.event + + + + +edu.harvard.hms.dbmi.bd2k.irct.event Class Hierarchy + + + + + + + + +
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                    edu.harvard.hms.dbmi.bd2k.irct.event

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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/AfterGetResult.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/AfterGetResult.html new file mode 100644 index 0000000..551643d --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/AfterGetResult.html @@ -0,0 +1,245 @@ + + + + + +AfterGetResult + + + + + + + + +
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                    edu.harvard.hms.dbmi.bd2k.irct.event.result
                    +

                    Interface AfterGetResult

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface AfterGetResult
+extends IRCTEvent
                      +
                      An event listener that is run after a result is retrieved
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
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                        Method Detail

                        + + + +
                          +
                        • +

                          fire

                          +
                          void fire(Result result)
                          +
                          An action that is run after a result is retrieved
                          +
                          +
                          Parameters:
                          +
                          result - Result
                          +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/ProcessAction.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/AfterSaveResult.html similarity index 54% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/ProcessAction.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/AfterSaveResult.html index f93bfda..cac3a15 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/ProcessAction.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/AfterSaveResult.html @@ -2,9 +2,9 @@ - -ProcessAction - + +AfterSaveResult + @@ -12,13 +12,13 @@ + + + + + +
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                    edu.harvard.hms.dbmi.bd2k.irct.event.result
                    +

                    Interface BeforeGetResult

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeGetResult
+extends IRCTEvent
                      +
                      An event listener that is run before a result is retrieved
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
                    +
                    +
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                    • + +
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                        Method Detail

                        + + + +
                          +
                        • +

                          fire

                          +
                          void fire(User user,
+          java.lang.Long resultId)
                          +
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                    edu.harvard.hms.dbmi.bd2k.irct.event.result
                    +

                    Interface BeforeSaveResult

                    +
                    +
                    +
                    +
                      +
                    • +
                      +
                      All Superinterfaces:
                      +
                      IRCTEvent
                      +
                      +
                      +
                      +
                      public interface BeforeSaveResult
+extends IRCTEvent
                      +
                      An event listener that is run before a result is retrieved
                      +
                      +
                      Author:
                      +
                      Jeremy R. Easton-Marks
                      +
                      +
                      • +
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                        Method Detail

                        + + + +
                          +
                        • +

                          fire

                          +
                          void fire(Result result)
                          +
                          • +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/AfterGetResult.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/AfterGetResult.html new file mode 100644 index 0000000..26671af --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/AfterGetResult.html @@ -0,0 +1,124 @@ + + + + + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.result.AfterGetResult + + + + + + + + +
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                    edu.harvard.hms.dbmi.bd2k.irct.event.result.AfterGetResult

                    +
                    +
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/MemoryResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/AfterSaveResult.html similarity index 78% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/MemoryResultSet.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/AfterSaveResult.html index 95a8b71..3d186c3 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/MemoryResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/AfterSaveResult.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.MemoryResultSet - + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.result.AfterSaveResult + @@ -12,7 +12,7 @@ + + + + + +
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                    Uses of Interface
                    edu.harvard.hms.dbmi.bd2k.irct.event.result.BeforeGetResult

                    +
                    +
                    No usage of edu.harvard.hms.dbmi.bd2k.irct.event.result.BeforeGetResult
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                    + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/class-use/ExecuteProcess.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/BeforeSaveResult.html similarity index 77% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/class-use/ExecuteProcess.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/BeforeSaveResult.html index 61406f0..cf86ed2 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/class-use/ExecuteProcess.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/class-use/BeforeSaveResult.html @@ -2,9 +2,9 @@ - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.action.process.ExecuteProcess - + +Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.event.result.BeforeSaveResult + @@ -12,7 +12,7 @@ + + +

                    edu.harvard.hms.dbmi.bd2k.irct.event.result

                    +
                    +

                    Interfaces

                    + +
                    + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/package-summary.html similarity index 72% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/package-summary.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/package-summary.html index 318736c..3171cf9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/process/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/event/result/package-summary.html @@ -2,9 +2,9 @@ - -edu.harvard.hms.dbmi.bd2k.irct.action.process - + +edu.harvard.hms.dbmi.bd2k.irct.event.result + @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseIsNotTheCorrectType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseIsNotTheCorrectType.html deleted file mode 100644 index 43b78cc..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseIsNotTheCorrectType.html +++ /dev/null @@ -1,272 +0,0 @@ - - - - - -ClauseIsNotTheCorrectType - - - - - - - - -
                    - - -
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                    edu.harvard.hms.dbmi.bd2k.irct.exception
                    -

                    Class ClauseIsNotTheCorrectType

                    -
                    -
                    -
                      -
                    • java.lang.Object
                      • -
                    • -
                        -
                      • java.lang.Throwable
                        • -
                      • -
                          -
                        • java.lang.Exception
                          • -
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                          • edu.harvard.hms.dbmi.bd2k.irct.exception.ClauseIsNotTheCorrectType
                            • -
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                      All Implemented Interfaces:
                      -
                      java.io.Serializable
                      -
                      -
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                      -
                      public class ClauseIsNotTheCorrectType
-extends java.lang.Exception
                      -
                      Signals that the clause is not of the correct type
                      -
                      -
                      Author:
                      -
                      Jeremy R. Easton-Marks
                      -
                      See Also:
                      -
                      Serialized Form
                      -
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                    • - -
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                        Constructor Summary

                        - - - - - - - - -
                        Constructors 
                        Constructor and Description
                        ClauseIsNotTheCorrectType(java.lang.Long clauseId) -
                        Constructs an exception with information about clause id
                        -
                        -
                        • -
                      - -
                        -
                      • - - -

                        Method Summary

                        -
                          -
                        • - - -

                          Methods inherited from class java.lang.Throwable

                          -addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString
                          • -
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                        • - - -

                          Methods inherited from class java.lang.Object

                          -equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
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                        Constructor Detail

                        - - - -
                          -
                        • -

                          ClauseIsNotTheCorrectType

                          -
                          public ClauseIsNotTheCorrectType(java.lang.Long clauseId)
                          -
                          Constructs an exception with information about clause id
                          -
                          -
                          Parameters:
                          -
                          clauseId - The clause id
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                    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseNotFoundException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseNotFoundException.html deleted file mode 100644 index c237153..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseNotFoundException.html +++ /dev/null @@ -1,272 +0,0 @@ - - - - - -ClauseNotFoundException - - - - - - - - -
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                    Class ClauseNotFoundException

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                      public class ClauseNotFoundException
-extends java.lang.Exception
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                      Signals that the clause could not be found
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                      Jeremy R. Easton-Marks
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                        ClauseNotFoundException(java.lang.Long clauseId) -
                        Creates an exception indicating that the clause could not be found
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                          ClauseNotFoundException

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                          public ClauseNotFoundException(java.lang.Long clauseId)
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                          Creates an exception indicating that the clause could not be found
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                    Class JoinTypeNotSupported

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                      public class JoinTypeNotSupported
-extends java.lang.Exception
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                      Signals that the join type is not supported
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                      Jeremy R. Easton-Marks
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                        Constructor and Description
                        JoinTypeNotSupported(java.lang.String joinType) -
                        Creates an exception indicating that the join type is not supported
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                          Creates an exception indicating that the join type is not supported
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                    Class LogicalOperatorNotFound

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                      public class LogicalOperatorNotFound
-extends java.lang.Exception
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                      Signals that the logical operator was not found
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                      Jeremy R. Easton-Marks
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                        LogicalOperatorNotFound(java.lang.String logicalOperator) -
                        Creates an exception indicating that the logical operator was not found
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                          LogicalOperatorNotFound

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                          public LogicalOperatorNotFound(java.lang.String logicalOperator)
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                          Creates an exception indicating that the logical operator was not found
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                          logicalOperator - Logical Operator
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                    Class PredicateException

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-extends java.lang.Exception
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                      An exception occurred in a predicate
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                      Jeremy R. Easton-Marks
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                        PredicateException(java.lang.String message) -
                        Create an exception that an unspecified error occurred in the predicate.
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                          Create an exception that an unspecified error occurred in the predicate.
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                    Class PredicateTypeNotSupported

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                      public class PredicateTypeNotSupported
-extends java.lang.Exception
                      -
                      Signals that the predicate type is not supported
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                      Jeremy R. Easton-Marks
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                        PredicateTypeNotSupported(java.lang.String predicate) -
                        Creates a predicate type is not supported exception
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                          Methods inherited from class java.lang.Throwable

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                          public PredicateTypeNotSupported(java.lang.String predicate)
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                          Creates a predicate type is not supported exception
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                    Class ResourceNotFoundException

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                      public class ResourceNotFoundException
-extends java.lang.Exception
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                      Signals that the resource could not be found
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                      Jeremy R. Easton-Marks
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                        Constructor and Description
                        ResourceNotFoundException(java.lang.String resource) -
                        Creates an exception that the resource was not found
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                          Methods inherited from class java.lang.Throwable

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                          ResourceNotFoundException

                          -
                          public ResourceNotFoundException(java.lang.String resource)
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                    edu.harvard.hms.dbmi.bd2k.irct.exception
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                    Class SubQueryNotFoundException

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                      public class SubQueryNotFoundException
-extends java.lang.Exception
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                      Signals that the subquery was not found
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                      Author:
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                      Jeremy R. Easton-Marks
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                      Serialized Form
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                        Constructor Summary

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                        Constructors 
                        Constructor and Description
                        SubQueryNotFoundException(java.lang.Long sqId) -
                        Creates an exception that states that the subquery was not found
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                        Method Summary

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                          Methods inherited from class java.lang.Throwable

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                        Constructor Detail

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                          SubQueryNotFoundException

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                          public SubQueryNotFoundException(java.lang.Long sqId)
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                          Creates an exception that states that the subquery was not found
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                          sqId - Subquery id
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                    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ActionNotSetException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ActionNotSetException.html index 67626e2..5078277 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ActionNotSetException.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ActionNotSetException.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.exception.ActionNotSetException - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ClauseIsNotTheCorrectType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ClauseIsNotTheCorrectType.html deleted file mode 100644 index e70944d..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ClauseIsNotTheCorrectType.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.exception.ClauseIsNotTheCorrectType - - - - - - - - -
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                    Uses of -void -QueryController.addJoinClause() +java.lang.Long +QueryController.addJoinClause(java.lang.Long clauseId, + Resource resource, + JoinType joinType, + java.util.Map<java.lang.String,java.lang.String> joinFields)
                    Adds a join clause
                    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceInterfaceException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceInterfaceException.html index a734c50..2165a57 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceInterfaceException.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceInterfaceException.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.exception.ResourceInterfaceException - + @@ -158,24 +158,14 @@

                    Uses of java.util.List<Entity> -PathController.searchForOntology(Resource resource, - Entity resourcePath, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
                    Searches a resource for a given ontology term from a given ontology.
                    - - - -java.util.List<Entity> -PathController.searchForTerm(Resource resource, +PathController.searchForTerm(Resource resource, Entity resourcePath, - java.lang.String searchTerm, + FindInformationInterface findInformation, SecureSession session)
                    Searches a resource for a given searchTerm.
                    - + java.util.List<Entity> PathController.traversePath(Resource resource, Entity resourcePath, @@ -262,27 +252,35 @@

                    Uses of java.util.List<Entity> +PathResourceImplementationInterface.find(Entity path, + FindInformationInterface findInformation, + SecureSession session) +
                    Given a path find all entities that match the finds
                    + + + +java.util.List<Entity> PathResourceImplementationInterface.getPathRelationship(Entity path, OntologyRelationship relationship, SecureSession session)
                    Given a path give all the associated paths of that type of relationship
                    - + Result QueryResourceImplementationInterface.getResults(SecureSession session, Result result)
                    Returns the results of the query if they are available
                    - + Result ProcessResourceImplementationInterface.getResults(SecureSession session, Result result)
                    Returns the results of the process if they are available
                    - + Result ProcessResourceImplementationInterface.runProcess(SecureSession session, IRCTProcess process, @@ -290,7 +288,7 @@

                    Uses of Run the given process

                  - + Result QueryResourceImplementationInterface.runQuery(SecureSession session, Query qep, @@ -298,25 +296,7 @@

                  Uses of Runs the given query

                - -java.util.List<Entity> -PathResourceImplementationInterface.searchOntology(Entity path, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
                Given a given path find all the ontology terms of the given ontology type - that are in that path.
                - - -java.util.List<Entity> -PathResourceImplementationInterface.searchPaths(Entity path, - java.lang.String searchTerm, - SecureSession session) -
                Given a given path find all the searchTerms that are in that path.
                - - - void ResourceImplementationInterface.setup(java.util.Map<java.lang.String,java.lang.String> parameters)
                A set of parameters that can used to setup the Resource Implementation
                diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceNotFoundException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceNotFoundException.html deleted file mode 100644 index 774e33b..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/class-use/ResourceNotFoundException.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.exception.ResourceNotFoundException - - - - - - - - -
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                @@ -144,7 +144,7 @@

                Package edu.harvard.hms.dbmi.bd2k.irct.ex

                diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-tree.html index ffa2aa0..213d815 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.exception Class Hierarchy - + @@ -43,7 +43,7 @@
                @@ -120,7 +120,7 @@

                Class Hierarchy

                diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-use.html index 0f57bab..847a5ca 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/exception/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.exception - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/Executable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/Executable.html index 31d077d..a333f53 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/Executable.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/Executable.html @@ -2,9 +2,9 @@ - + Executable - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableChildNode.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableChildNode.html index 8bb2a69..eb70f24 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableChildNode.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableChildNode.html @@ -2,9 +2,9 @@ - + ExecutableChildNode - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableLeafNode.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableLeafNode.html index 7fd1bb0..ba2b8da 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableLeafNode.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableLeafNode.html @@ -2,9 +2,9 @@ - + ExecutableLeafNode - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableStatus.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableStatus.html index fbfb044..b7e633d 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableStatus.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutableStatus.html @@ -2,9 +2,9 @@ - + ExecutableStatus - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutionPlan.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutionPlan.html index abe651b..a9bfe4a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutionPlan.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/ExecutionPlan.html @@ -2,9 +2,9 @@ - + ExecutionPlan - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/Executable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/Executable.html index 395220d..bf68c06 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/Executable.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/Executable.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.executable.Executable - + @@ -83,6 +83,14 @@

                +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -95,6 +103,60 @@

                  +
                • + + +

                  Uses of Executable in edu.harvard.hms.dbmi.bd2k.irct.event

                  + + + + + + + + + + + + + + + + +
                  Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type Executable 
                  Modifier and TypeMethod and Description
                  voidIRCTEventListener.afterExecutionPlan(SecureSession session, + Executable executable) +
                  Runs the event listeners after an execution plan is run
                  +
                  voidIRCTEventListener.beforeExecutionPlan(SecureSession session, + Executable executable) +
                  Runs the event listener before an execution plan is run
                  +
                  +
                  • +
                • + + +

                  Uses of Executable in edu.harvard.hms.dbmi.bd2k.irct.event.action

                  + + + + + + + + + + + + + + + + +
                  Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type Executable 
                  Modifier and TypeMethod and Description
                  voidBeforeExecutionPlan.fire(SecureSession session, + Executable executable) 
                  voidAfterExecutionPlan.fire(SecureSession session, + Executable executable) +
                  An action that is run after an execution plan is completed
                  +
                  +
                • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableChildNode.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableChildNode.html index dfe7948..be660f3 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableChildNode.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableChildNode.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.executable.ExecutableChildNode - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableLeafNode.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableLeafNode.html index b9a8d90..84a9739 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableLeafNode.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableLeafNode.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.executable.ExecutableLeafNode - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableStatus.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableStatus.html index afba699..4fa9b7a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableStatus.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutableStatus.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.executable.ExecutableStatus - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutionPlan.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutionPlan.html index 7be7736..1fbc6c0 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutionPlan.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/class-use/ExecutionPlan.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.executable.ExecutionPlan - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-frame.html index 2c71a7b..b60b9b1 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.executable - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-summary.html index 5b2d723..55a8bab 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.executable - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-tree.html index c0168cf..9f484dc 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.executable Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-use.html index c89dd72..7bf5858 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/executable/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.executable - + @@ -87,6 +87,14 @@

                    +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -114,6 +122,42 @@

                  + + + + + + + + + + + + +
                  Classes in edu.harvard.hms.dbmi.bd2k.irct.executable used by edu.harvard.hms.dbmi.bd2k.irct.event 
                  Class and Description
                  Executable +
                  The executable interface provides a set of methods that an executable must + implement.
                  +
                  +

                  • +
                • + + + + + + + + + + + + +
                  Classes in edu.harvard.hms.dbmi.bd2k.irct.executable used by edu.harvard.hms.dbmi.bd2k.irct.event.action 
                  Class and Description
                  Executable +
                  The executable interface provides a set of methods that an executable must + implement.
                  +
                  +
                • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/FullOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/FullOuterJoin.html index 930a011..de22c5b 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/FullOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/FullOuterJoin.html @@ -2,9 +2,9 @@ - + FullOuterJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/InnerJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/InnerJoin.html index 80f5601..b43aa47 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/InnerJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/InnerJoin.html @@ -2,9 +2,9 @@ - + InnerJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/JoinImplementation.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/JoinImplementation.html index 8524fa7..f355173 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/JoinImplementation.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/JoinImplementation.html @@ -2,9 +2,9 @@ - + JoinImplementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/LeftOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/LeftOuterJoin.html index bda9358..8613dfd 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/LeftOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/LeftOuterJoin.html @@ -2,9 +2,9 @@ - + LeftOuterJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/RightOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/RightOuterJoin.html index 79ef3c6..da7df75 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/RightOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/RightOuterJoin.html @@ -2,9 +2,9 @@ - + RightOuterJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/FullOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/FullOuterJoin.html index e3263eb..69c1268 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/FullOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/FullOuterJoin.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.join.FullOuterJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/InnerJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/InnerJoin.html index d6e1261..c4685d3 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/InnerJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/InnerJoin.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.join.InnerJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/JoinImplementation.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/JoinImplementation.html index c1b22ae..01f5afa 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/JoinImplementation.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/JoinImplementation.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.join.JoinImplementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/LeftOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/LeftOuterJoin.html index fea50bf..2ef0390 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/LeftOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/LeftOuterJoin.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.join.LeftOuterJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/RightOuterJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/RightOuterJoin.html index 40190a5..a443571 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/RightOuterJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/class-use/RightOuterJoin.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.join.RightOuterJoin - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-frame.html index f47fdfb..96afb0d 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.join - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-summary.html index 840f954..a3f796e 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.join - + @@ -44,7 +44,7 @@
                  • Frames
                    • @@ -151,7 +151,7 @@

                    Package edu.harvard.hms.dbmi.bd2k.irct.jo
                    • Frames
                      • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-tree.html index fb3a2f5..f7a34ae 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.join Class Hierarchy - + @@ -44,7 +44,7 @@
                      • Frames
                        • @@ -115,7 +115,7 @@

                        Interface Hierarchy

                        • Frames
                          • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-use.html index 3a458fc..e9acfbf 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/join/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.join - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/class-use/ActionState.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/class-use/ActionState.html deleted file mode 100644 index 1f4e48d..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/class-use/ActionState.html +++ /dev/null @@ -1,193 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.action.ActionState - - - - - - - - -
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                          Uses of Class
                          edu.harvard.hms.dbmi.bd2k.irct.model.action.ActionState

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                          edu.harvard.hms.dbmi.bd2k.irct.model.action

                          -
                          -

                          Classes

                          - -
                          - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/package-use.html deleted file mode 100644 index 35be2ff..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/action/package-use.html +++ /dev/null @@ -1,159 +0,0 @@ - - - - - -Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.action - - - - - - - - -
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                          - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Column.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/FindByOntology.html similarity index 58% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Column.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/FindByOntology.html index e94c02d..a68207f 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Column.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/FindByOntology.html @@ -2,9 +2,9 @@ - -Column - + +FindByOntology + @@ -12,13 +12,13 @@ @@ -12,13 +12,13 @@ @@ -12,14 +12,14 @@ @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ + + + + + +
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                          Uses of Interface
                          edu.harvard.hms.dbmi.bd2k.irct.model.find.FindInformationInterface

                          +
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                          + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/package-frame.html new file mode 100644 index 0000000..29604dc --- /dev/null +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/package-frame.html @@ -0,0 +1,25 @@ + + + + + +edu.harvard.hms.dbmi.bd2k.irct.model.find + + + + + +

                          edu.harvard.hms.dbmi.bd2k.irct.model.find

                          +
                          +

                          Interfaces

                          + +

                          Classes

                          + +
                          + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/package-summary.html similarity index 80% rename from javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/package-summary.html rename to javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/package-summary.html index 7442d19..b66d016 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/action/query/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/find/package-summary.html @@ -2,9 +2,9 @@ - -edu.harvard.hms.dbmi.bd2k.irct.action.query - + +edu.harvard.hms.dbmi.bd2k.irct.model.find + @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ @@ -12,7 +12,7 @@ diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/class-use/IRCTJoin.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/class-use/IRCTJoin.html index da4db0e..2afa655 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/class-use/IRCTJoin.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/class-use/IRCTJoin.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.join.IRCTJoin - + @@ -95,7 +95,11 @@

                            -edu.harvard.hms.dbmi.bd2k.irct.model.resource +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action   @@ -219,27 +223,40 @@

                          Uses of +
                        • -

                          Uses of IRCTJoin in edu.harvard.hms.dbmi.bd2k.irct.model.resource

                          +

                          Uses of IRCTJoin in edu.harvard.hms.dbmi.bd2k.irct.event

                          - + - - + + + + +
                          Methods in edu.harvard.hms.dbmi.bd2k.irct.model.resource that return types with arguments of type IRCTJoin Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type IRCTJoin 
                          Modifier and Type Method and Description
                          java.util.List<IRCTJoin>Resource.getSupportedJoins() -
                          Returns a list joins that are supported by the resource
                          +                          		voidIRCTEventListener.afterJoin(SecureSession session, + IRCTJoin joinType) +
                          Runs the event listeners after a join is run
                          +
                          voidIRCTEventListener.beforeJoin(SecureSession session, + IRCTJoin joinType) +
                          Runs the event listeners before a join is run
                          +
                          • +
                        • + + +

                          Uses of IRCTJoin in edu.harvard.hms.dbmi.bd2k.irct.event.action

                          - + @@ -247,9 +264,13 @@

                          Uses of

                          - + + + + +
                          Method parameters in edu.harvard.hms.dbmi.bd2k.irct.model.resource with type arguments of type IRCTJoin Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type IRCTJoin 
                          Modifier and Type Method and DescriptionvoidResource.setSupportedJoins(java.util.List<IRCTJoin> supportedJoins) -
                          Sets the list joins that are supported by the resource
                          -                          		BeforeJoin.fire(SecureSession session, + IRCTJoin joinType) 
                          voidAfterJoin.fire(SecureSession session, + IRCTJoin joinType) 
                          diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-frame.html index a09789e..098ce76 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.join - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-summary.html index 1a4289f..1c138a7 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.join - + @@ -43,7 +43,7 @@

                          @@ -115,7 +115,7 @@

                          Package edu.harvard.hms.dbmi.bd2k.irct.mo

                          diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-tree.html index ba0b340..dbb0050 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/join/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.join Class Hierarchy - + @@ -43,7 +43,7 @@
                          @@ -107,7 +107,7 @@

                          Class Hierarchy

                        -
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                        - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/class-use/PrimitiveDataType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/class-use/PrimitiveDataType.html deleted file mode 100644 index 5fec1b9..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/class-use/PrimitiveDataType.html +++ /dev/null @@ -1,278 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.ontology.PrimitiveDataType - - - - - - - - -
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                        Uses of Class
                        edu.harvard.hms.dbmi.bd2k.irct.model.ontology.PrimitiveDataType

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                        - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-frame.html index 7cede48..f868ec2 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.ontology - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-summary.html index 1b8463b..cf3d63e 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.ontology - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-tree.html index d996203..5d21274 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.ontology Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-use.html index 8b95658..60a38df 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/ontology/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.ontology - + @@ -87,6 +87,14 @@

                          +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.find +  + + edu.harvard.hms.dbmi.bd2k.irct.model.ontology   @@ -132,6 +140,40 @@

                        +
                      • + + + + + + + + + + + + +
                        Classes in edu.harvard.hms.dbmi.bd2k.irct.model.ontology used by edu.harvard.hms.dbmi.bd2k.irct.event 
                        Class and Description
                        Entity +
                        The Entity class represents a path, and object in a resource.
                        +
                        +
                        • +
                      • + + + + + + + + + + + + +
                        Classes in edu.harvard.hms.dbmi.bd2k.irct.model.ontology used by edu.harvard.hms.dbmi.bd2k.irct.event.find 
                        Class and Description
                        Entity +
                        The Entity class represents a path, and object in a resource.
                        +
                        +
                      • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcess.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcess.html index 73a0e87..605c761 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcess.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcess.html @@ -2,9 +2,9 @@ - + IRCTProcess - + @@ -18,7 +18,7 @@ catch(err) { } //--> -var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10}; +var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10}; var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; var altColor = "altColor"; var rowColor = "rowColor"; @@ -221,13 +221,17 @@

                        Method Summary

                        Sets a map of string representation of the values of the fields for the process
                        + +java.lang.String +toString()  +

                        • Methods inherited from class java.lang.Object

                          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
                          • +equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

                      @@ -261,6 +265,19 @@

                      IRCTProcess

                      Method Detail

                      + + + +
                        +
                      • +

                        toString

                        +
                        public java.lang.String toString()
                        +
                        +
                        Overrides:
                        +
                        toString in class java.lang.Object
                        +
                        +
                        • +
                      diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameterType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameterType.html deleted file mode 100644 index 9500fe5..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameterType.html +++ /dev/null @@ -1,466 +0,0 @@ - - - - - -IRCTProcessParameterType - - - - - - - - -
                      - - -
                      Skip navigation links
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                      edu.harvard.hms.dbmi.bd2k.irct.model.process
                      -

                      Enum IRCTProcessParameterType

                      -
                      -
                      -
                        -
                      • java.lang.Object
                        • -
                      • -
                          -
                        • java.lang.Enum<IRCTProcessParameterType>
                          • -
                        • -
                            -
                          • edu.harvard.hms.dbmi.bd2k.irct.model.process.IRCTProcessParameterType
                            • -
                          -
                          • -
                        -
                        • -
                      -
                      -
                        -
                      • -
                        -
                        All Implemented Interfaces:
                        -
                        java.io.Serializable, java.lang.Comparable<IRCTProcessParameterType>
                        -
                        -
                        -
                        -
                        public enum IRCTProcessParameterType
-extends java.lang.Enum<IRCTProcessParameterType>
                        -
                        Provides a base set of data type "primitives" that can be used for a process parameter
                        -
                        -
                        Author:
                        -
                        Jeremy R. Easton-Marks
                        -
                        -
                        • -
                      -
                      -
                      -
                        -
                      • - - - -
                          -
                        • - - -

                          Method Summary

                          - - - - - - - - - - - - - - -
                          All Methods Static Methods Concrete Methods 
                          Modifier and TypeMethod and Description
                          static IRCTProcessParameterTypevalueOf(java.lang.String name) -
                          Returns the enum constant of this type with the specified name.
                          -
                          static IRCTProcessParameterType[]values() -
                          Returns an array containing the constants of this enum type, in -the order they are declared.
                          -
                          -
                            -
                          • - - -

                            Methods inherited from class java.lang.Enum

                            -compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
                            • -
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                            Methods inherited from class java.lang.Object

                            -getClass, notify, notifyAll, wait, wait, wait
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                          Method Detail

                          - - - -
                            -
                          • -

                            values

                            -
                            public static IRCTProcessParameterType[] values()
                            -
                            Returns an array containing the constants of this enum type, in -the order they are declared. This method may be used to iterate -over the constants as follows: -
                            -for (IRCTProcessParameterType c : IRCTProcessParameterType.values())
-    System.out.println(c);
-
                            -
                            -
                            Returns:
                            -
                            an array containing the constants of this enum type, in the order they are declared
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            valueOf

                            -
                            public static IRCTProcessParameterType valueOf(java.lang.String name)
                            -
                            Returns the enum constant of this type with the specified name. -The string must match exactly an identifier used to declare an -enum constant in this type. (Extraneous whitespace characters are -not permitted.)
                            -
                            -
                            Parameters:
                            -
                            name - the name of the enum constant to be returned.
                            -
                            Returns:
                            -
                            the enum constant with the specified name
                            -
                            Throws:
                            -
                            java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
                            -
                            java.lang.NullPointerException - if the argument is null
                            -
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                      - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessType.html deleted file mode 100644 index 68dc3c8..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessType.html +++ /dev/null @@ -1,511 +0,0 @@ - - - - - -ProcessType - - - - - - - - -
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                      edu.harvard.hms.dbmi.bd2k.irct.model.process
                      -

                      Class ProcessType

                      -
                      -
                      -
                        -
                      • java.lang.Object
                        • -
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                        • edu.harvard.hms.dbmi.bd2k.irct.model.process.ProcessType
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                        All Implemented Interfaces:
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                        java.io.Serializable
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                        @Entity
-public class ProcessType
-extends java.lang.Object
-implements java.io.Serializable
                        -
                        Defines the process type
                        -
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                        Author:
                        -
                        Jeremy R. Easton-Marks
                        -
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                        Serialized Form
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                          Constructor Summary

                          - - - - - - - - -
                          Constructors 
                          Constructor and Description
                          ProcessType() 
                          -
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                          Method Summary

                          - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
                          All Methods Instance Methods Concrete Methods 
                          Modifier and TypeMethod and Description
                          java.lang.StringgetDescription() -
                          Returns a description of the process
                          -
                          java.lang.StringgetDisplayName() 
                          longgetId() -
                          Returns the id
                          -
                          java.lang.StringgetName() -
                          Returns the name of the process
                          -
                          java.util.List<ProcessTypeParameter>getParameter() -
                          Returns a list parameters
                          -
                          voidsetDescription(java.lang.String description) -
                          Sets the description of the process
                          -
                          voidsetDisplayName(java.lang.String displayName) 
                          voidsetId(long id) -
                          Sets the id
                          -
                          voidsetName(java.lang.String name) -
                          Sets the name of the process
                          -
                          voidsetParameter(java.util.List<ProcessTypeParameter> parameter) -
                          Sets a list of the parameters
                          -
                          javax.json.JsonObjecttoJson() -
                          Returns a JSONObject representation of the object.
                          -
                          javax.json.JsonObjecttoJson(int depth) -
                          Returns a JSONObject representation of the object.
                          -
                          -
                            -
                          • - - -

                            Methods inherited from class java.lang.Object

                            -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
                            • -
                          -
                          • -
                        -
                        • -
                      -
                      -
                      -
                        -
                      • - -
                          -
                        • - - -

                          Constructor Detail

                          - - - -
                            -
                          • -

                            ProcessType

                            -
                            public ProcessType()
                            -
                            • -
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                          • -
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                          -
                        • - - -

                          Method Detail

                          - - - -
                            -
                          • -

                            toJson

                            -
                            public javax.json.JsonObject toJson()
                            -
                            Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
                            -
                            -
                            Returns:
                            -
                            JSON Representation
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            toJson

                            -
                            public javax.json.JsonObject toJson(int depth)
                            -
                            Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
                            -
                            -
                            Parameters:
                            -
                            depth - Depth to travel
                            -
                            Returns:
                            -
                            JSON Representation
                            -
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                            • -
                          - - - -
                            -
                          • -

                            getId

                            -
                            public long getId()
                            -
                            Returns the id
                            -
                            -
                            Returns:
                            -
                            ID
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            setId

                            -
                            public void setId(long id)
                            -
                            Sets the id
                            -
                            -
                            Parameters:
                            -
                            id - ID
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            getName

                            -
                            public java.lang.String getName()
                            -
                            Returns the name of the process
                            -
                            -
                            Returns:
                            -
                            Name
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            setName

                            -
                            public void setName(java.lang.String name)
                            -
                            Sets the name of the process
                            -
                            -
                            Parameters:
                            -
                            name - Name
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            getDescription

                            -
                            public java.lang.String getDescription()
                            -
                            Returns a description of the process
                            -
                            -
                            Returns:
                            -
                            Description
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            setDescription

                            -
                            public void setDescription(java.lang.String description)
                            -
                            Sets the description of the process
                            -
                            -
                            Parameters:
                            -
                            description - Description
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            getParameter

                            -
                            public java.util.List<ProcessTypeParameter> getParameter()
                            -
                            Returns a list parameters
                            -
                            -
                            Returns:
                            -
                            List of parameters
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            setParameter

                            -
                            public void setParameter(java.util.List<ProcessTypeParameter> parameter)
                            -
                            Sets a list of the parameters
                            -
                            -
                            Parameters:
                            -
                            parameter - List of the parameters
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            getDisplayName

                            -
                            public java.lang.String getDisplayName()
                            -
                            -
                            Returns:
                            -
                            the displayName
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            setDisplayName

                            -
                            public void setDisplayName(java.lang.String displayName)
                            -
                            -
                            Parameters:
                            -
                            displayName - the displayName to set
                            -
                            -
                            • -
                          -
                          • -
                        -
                        • -
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                      - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameter.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameter.html deleted file mode 100644 index 4656307..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameter.html +++ /dev/null @@ -1,478 +0,0 @@ - - - - - -ProcessTypeParameter - - - - - - - - -
                      - - -
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                      edu.harvard.hms.dbmi.bd2k.irct.model.process
                      -

                      Class ProcessTypeParameter

                      -
                      -
                      -
                        -
                      • java.lang.Object
                        • -
                      • -
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                        • edu.harvard.hms.dbmi.bd2k.irct.model.process.ProcessTypeParameter
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                        All Implemented Interfaces:
                        -
                        java.io.Serializable
                        -
                        -
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                        -
                        @Entity
-public class ProcessTypeParameter
-extends java.lang.Object
-implements java.io.Serializable
                        -
                        An IRCT Process Parameter is used by an IRCT Process to describe a set of - values that can be passed into it.
                        -
                        -
                        Author:
                        -
                        Jeremy R. Easton-Marks
                        -
                        See Also:
                        -
                        Serialized Form
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                          Method Summary

                          - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
                          All Methods Instance Methods Concrete Methods 
                          Modifier and TypeMethod and Description
                          longgetId() -
                          Returns the id
                          -
                          java.lang.StringgetName() -
                          Returns the name of the parameter
                          -
                          ProcessTypeParameterTypegetType() -
                          Returns the IRCT Parameter Type
                          -
                          java.lang.StringgetValue() -
                          Returns the value of the parameter
                          -
                          voidsetId(long id) -
                          Sets the id
                          -
                          voidsetName(java.lang.String name) -
                          Sets the name of the parameter
                          -
                          voidsetType(ProcessTypeParameterType type) -
                          Sets the IRCT Parameter Type
                          -
                          voidsetValue(java.lang.String value) -
                          Sets the value of the parameter
                          -
                          javax.json.JsonObjecttoJson() -
                          Returns a JSONObject representation of the object.
                          -
                          javax.json.JsonObjecttoJson(int depth) -
                          Returns a JSONObject representation of the object.
                          -
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                            Methods inherited from class java.lang.Object

                            -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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                          Constructor Detail

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                            ProcessTypeParameter

                            -
                            public ProcessTypeParameter()
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                          Method Detail

                          - - - -
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                            toJson

                            -
                            public javax.json.JsonObject toJson()
                            -
                            Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
                            -
                            -
                            Returns:
                            -
                            JSON Representation
                            -
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                            • -
                          - - - -
                            -
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                            toJson

                            -
                            public javax.json.JsonObject toJson(int depth)
                            -
                            Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
                            -
                            -
                            Parameters:
                            -
                            depth - Depth to travel
                            -
                            Returns:
                            -
                            JSON Representation
                            -
                            -
                            • -
                          - - - -
                            -
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                            getId

                            -
                            public long getId()
                            -
                            Returns the id
                            -
                            -
                            Returns:
                            -
                            ID
                            -
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                            • -
                          - - - -
                            -
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                            setId

                            -
                            public void setId(long id)
                            -
                            Sets the id
                            -
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                            Parameters:
                            -
                            id - ID
                            -
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                            • -
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                            -
                          • -

                            getName

                            -
                            public java.lang.String getName()
                            -
                            Returns the name of the parameter
                            -
                            -
                            Returns:
                            -
                            Name
                            -
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                            • -
                          - - - -
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                          • -

                            setName

                            -
                            public void setName(java.lang.String name)
                            -
                            Sets the name of the parameter
                            -
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                            Parameters:
                            -
                            name - Name
                            -
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                            • -
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                            -
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                            getType

                            -
                            public ProcessTypeParameterType getType()
                            -
                            Returns the IRCT Parameter Type
                            -
                            -
                            Returns:
                            -
                            Parameter Type
                            -
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                            • -
                          - - - -
                            -
                          • -

                            setType

                            -
                            public void setType(ProcessTypeParameterType type)
                            -
                            Sets the IRCT Parameter Type
                            -
                            -
                            Parameters:
                            -
                            type - Parameter Type
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            getValue

                            -
                            public java.lang.String getValue()
                            -
                            Returns the value of the parameter
                            -
                            -
                            Returns:
                            -
                            Value
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            setValue

                            -
                            public void setValue(java.lang.String value)
                            -
                            Sets the value of the parameter
                            -
                            -
                            Parameters:
                            -
                            value - Value
                            -
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                      - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameterType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameterType.html deleted file mode 100644 index 6782d2c..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameterType.html +++ /dev/null @@ -1,466 +0,0 @@ - - - - - -ProcessTypeParameterType - - - - - - - - -
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                      edu.harvard.hms.dbmi.bd2k.irct.model.process
                      -

                      Enum ProcessTypeParameterType

                      -
                      -
                      -
                        -
                      • java.lang.Object
                        • -
                      • -
                          -
                        • java.lang.Enum<ProcessTypeParameterType>
                          • -
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                          • edu.harvard.hms.dbmi.bd2k.irct.model.process.ProcessTypeParameterType
                            • -
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                        All Implemented Interfaces:
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                        java.io.Serializable, java.lang.Comparable<ProcessTypeParameterType>
                        -
                        -
                        -
                        -
                        public enum ProcessTypeParameterType
-extends java.lang.Enum<ProcessTypeParameterType>
                        -
                        Provides a base set of data type "primitives" that can be used for a process parameter
                        -
                        -
                        Author:
                        -
                        Jeremy R. Easton-Marks
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                          Method Summary

                          - - - - - - - - - - - - - - -
                          All Methods Static Methods Concrete Methods 
                          Modifier and TypeMethod and Description
                          static ProcessTypeParameterTypevalueOf(java.lang.String name) -
                          Returns the enum constant of this type with the specified name.
                          -
                          static ProcessTypeParameterType[]values() -
                          Returns an array containing the constants of this enum type, in -the order they are declared.
                          -
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                            Methods inherited from class java.lang.Enum

                            -compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
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                            Methods inherited from class java.lang.Object

                            -getClass, notify, notifyAll, wait, wait, wait
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                          Method Detail

                          - - - -
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                            values

                            -
                            public static ProcessTypeParameterType[] values()
                            -
                            Returns an array containing the constants of this enum type, in -the order they are declared. This method may be used to iterate -over the constants as follows: -
                            -for (ProcessTypeParameterType c : ProcessTypeParameterType.values())
-    System.out.println(c);
-
                            -
                            -
                            Returns:
                            -
                            an array containing the constants of this enum type, in the order they are declared
                            -
                            -
                            • -
                          - - - -
                            -
                          • -

                            valueOf

                            -
                            public static ProcessTypeParameterType valueOf(java.lang.String name)
                            -
                            Returns the enum constant of this type with the specified name. -The string must match exactly an identifier used to declare an -enum constant in this type. (Extraneous whitespace characters are -not permitted.)
                            -
                            -
                            Parameters:
                            -
                            name - the name of the enum constant to be returned.
                            -
                            Returns:
                            -
                            the enum constant with the specified name
                            -
                            Throws:
                            -
                            java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
                            -
                            java.lang.NullPointerException - if the argument is null
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                      - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcess.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcess.html index ff32054..3dc8991 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcess.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcess.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.process.IRCTProcess - + @@ -91,6 +91,14 @@

                        +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation   @@ -177,6 +185,58 @@

                      Uses of + + +

                      Uses of IRCTProcess in edu.harvard.hms.dbmi.bd2k.irct.event

                      + + + + + + + + + + + + + + + + +
                      Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type IRCTProcess 
                      Modifier and TypeMethod and Description
                      voidIRCTEventListener.afterProcess(SecureSession session, + IRCTProcess process) +
                      Runs the event listeners after a process is run
                      +
                      voidIRCTEventListener.beforeProcess(SecureSession session, + IRCTProcess process) +
                      Runs the event listeners before a process is run
                      +
                      + +
                    • + + +

                      Uses of IRCTProcess in edu.harvard.hms.dbmi.bd2k.irct.event.action

                      + + + + + + + + + + + + + + + + +
                      Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type IRCTProcess 
                      Modifier and TypeMethod and Description
                      voidBeforeProcess.fire(SecureSession session, + IRCTProcess process) 
                      voidAfterProcess.fire(SecureSession session, + IRCTProcess process) 
                      +
                    • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcessParameter.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcessParameter.html deleted file mode 100644 index a92f75a..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/class-use/IRCTProcessParameter.html +++ /dev/null @@ -1,181 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.process.IRCTProcessParameter - - - - - - - - -
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                      edu.harvard.hms.dbmi.bd2k.irct.model.process.ProcessTypeParameterType

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                      - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-frame.html index b2773b5..b6b0930 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.process - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-summary.html index 6f81074..37cdce2 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.process - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-tree.html index 81daf4a..a7f3b30 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.process Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-use.html index 47d6d6b..e276206 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/process/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.process - + @@ -91,6 +91,14 @@

                        +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation   @@ -131,6 +139,40 @@

                      + + + + + + + + + + + + +
                      Classes in edu.harvard.hms.dbmi.bd2k.irct.model.process used by edu.harvard.hms.dbmi.bd2k.irct.event 
                      Class and Description
                      IRCTProcess +
                      Creates an executable process
                      +
                      +

                      • +
                    • + + + + + + + + + + + + +
                      Classes in edu.harvard.hms.dbmi.bd2k.irct.model.process used by edu.harvard.hms.dbmi.bd2k.irct.event.action 
                      Class and Description
                      IRCTProcess +
                      Creates an executable process
                      +
                      +
                    • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/ClauseAbstract.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/ClauseAbstract.html index aa9b32e..b5ca266 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/ClauseAbstract.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/ClauseAbstract.html @@ -2,9 +2,9 @@ - + ClauseAbstract - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinClause.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinClause.html index 002e4c6..7c2740a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinClause.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinClause.html @@ -2,9 +2,9 @@ - + JoinClause - + @@ -18,7 +18,7 @@ catch(err) { } //--> -var methods = {"i0":10,"i1":10}; +var methods = {"i0":10,"i1":10,"i2":10,"i3":10}; var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; var altColor = "altColor"; var rowColor = "rowColor"; @@ -167,12 +167,20 @@

                      Method Summary

                      Method and Description +JoinType +getJoinType()  + + java.util.Map<java.lang.String,java.lang.String> getStringValues()
                      Returns a map of strings that represent the fields for the join clause
                      - + +void +setJoinType(JoinType joinType)  + + void setStringValues(java.util.Map<java.lang.String,java.lang.String> stringValues)
                      Sets a mpa of string that represent the fields for the join clause
                      @@ -225,6 +233,32 @@

                      JoinClause

                      Method Detail

                      + + + +
                        +
                      • +

                        getJoinType

                        +
                        public JoinType getJoinType()
                        +
                        +
                        Returns:
                        +
                        the joinType
                        +
                        +
                        • +
                      + + + +
                        +
                      • +

                        setJoinType

                        +
                        public void setJoinType(JoinType joinType)
                        +
                        +
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                        +
                        joinType - the joinType to set
                        +
                        +
                        • +
                      diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinType.html index f912f12..ad307d5 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/JoinType.html @@ -2,9 +2,9 @@ - + JoinType - + @@ -113,7 +113,8 @@

                      Class JoinType


      -
      public class JoinType
+
      @Entity
+public class JoinType
 extends java.lang.Object
 implements java.io.Serializable
      
 
      
diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/LogicalOperator.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/LogicalOperator.html
deleted file mode 100644
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      edu.harvard.hms.dbmi.bd2k.irct.model.query
      
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      Enum LogicalOperator
      
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-
        public enum LogicalOperator
-extends java.lang.Enum<LogicalOperator>
        
-
        Logical Operator enumerations provide a choice of three different operators
- that can be used to combine different where clauses or other parts of a query
        
-
        
-
        Author:
        
-
        Jeremy R. Easton-Marks
        
-
        
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          Modifier and TypeMethod and Description
          static LogicalOperatorvalueOf(java.lang.String name)
-
          Returns the enum constant of this type with the specified name.
          
-
          static LogicalOperator[]values()
-
          Returns an array containing the constants of this enum type, in
-the order they are declared.
          
-
          
-
            
-
          • 
-
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-
            Methods inherited from class java.lang.Enum
            
-compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
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            values
            
-
            public static LogicalOperator[] values()
            
-
            Returns an array containing the constants of this enum type, in
-the order they are declared.  This method may be used to iterate
-over the constants as follows:
-
            -for (LogicalOperator c : LogicalOperator.values())
-    System.out.println(c);
-
            
-
            
-
            Returns:
            
-
            an array containing the constants of this enum type, in the order they are declared
            
-
            
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            valueOf
            
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            public static LogicalOperator valueOf(java.lang.String name)
            
-
            Returns the enum constant of this type with the specified name.
-The string must match exactly an identifier used to declare an
-enum constant in this type.  (Extraneous whitespace characters are 
-not permitted.)
            
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-
            Parameters:
            
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            name - the name of the enum constant to be returned.
            
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            Returns:
            
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            the enum constant with the specified name
            
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            java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
            
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            java.lang.NullPointerException - if the argument is null
            
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diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateType.html
index 4729eed..908faed 100644
--- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateType.html
+++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateType.html
@@ -2,9 +2,9 @@
 
 
 
-
+
 PredicateType
-
+
 
 
 
diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValue.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValue.html
deleted file mode 100644
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      edu.harvard.hms.dbmi.bd2k.irct.model.query
      
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      Class PredicateTypeValue
      
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        • 
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        @Entity
-public class PredicateTypeValue
-extends java.lang.Object
-implements java.io.Serializable
        
-
        A predicate type value that is associated with a predicate
        
-
        
-
        Author:
        
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        Jeremy R. Easton-Marks
        
-
        See Also:
        
-
        Serialized Form
        
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          Constructor Summary
          
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          Constructors 
          Constructor and Description
          PredicateTypeValue() 
          
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          java.lang.StringgetField() 
          longgetId()
-
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-
          java.lang.StringgetName() 
          java.util.List<java.lang.String>getPermittedValues()
-
          Returns a list of permitted values if they are limited
          
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          java.lang.StringgetRelationship() 
          java.util.List<PredicateTypeValueDataType>getSupportedDataTypes()
-
          Returns a list of supported predicate types
          
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-
          Sets the id
          
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-
          Sets a list of permitted values if they are limited
          
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          voidsetRelationship(java.lang.String relationship) 
          voidsetRequired(boolean required)
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          voidsetSupportedDataTypes(java.util.List<PredicateTypeValueDataType> supportedDataTypes)
-
          Sets the supported predicate types
          
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          booleansupportsDataType(PrimitiveDataType dataType)
-
          Returns if the predicate supports a given Data Type
          
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          javax.json.JsonObjecttoJson()
-
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-
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          Constructor Detail
          
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            supportsDataType
            
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            public boolean supportsDataType(PrimitiveDataType dataType)
            
-
            Returns if the predicate supports a given Data Type
            
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            Parameters:
            
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            dataType - The Data Type
            
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            JSON Representation
            
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-
            Returns a JSONObject representation of the object. This returns only the
- attributes associated with this object and not their representation.
            
-
            
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            Parameters:
            
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            depth - Depth to travel
            
-
            Returns:
            
-
            JSON Representation
            
-
            
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            • 
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            getId
            
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            public long getId()
            
-
            Returns the id
            
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            Returns:
            
-
            Id
            
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            setId
            
-
            public void setId(long id)
            
-
            Sets the id
            
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            Parameters:
            
-
            id - Id
            
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-
            
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            Returns:
            
-
            the name
            
-
            
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-
            setName
            
-
            public void setName(java.lang.String name)
            
-
            
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            Parameters:
            
-
            name - the name to set
            
-
            
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            getField
            
-
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            public boolean isRequired()
            
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            Returns if this value is required
            
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            Required
            
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            setRequired
            
-
            public void setRequired(boolean required)
            
-
            Sets if this value is required
            
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            Parameters:
            
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            required - Required
            
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-
            • 
-
          
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            getSupportedDataTypes
            
-
            public java.util.List<PredicateTypeValueDataType> getSupportedDataTypes()
            
-
            Returns a list of supported predicate types
            
-
            
-
            Returns:
            
-
            Supported predicate types
            
-
            
-
            • 
-
          
-
-
-
-
            
-
          • 
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            setSupportedDataTypes
            
-
            public void setSupportedDataTypes(java.util.List<PredicateTypeValueDataType> supportedDataTypes)
            
-
            Sets the supported predicate types
            
-
            
-
            Parameters:
            
-
            supportedDataTypes - Supported predicate types
            
-
            
-
            • 
-
          
-
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-
          • 
-
            getPermittedValues
            
-
            public java.util.List<java.lang.String> getPermittedValues()
            
-
            Returns a list of permitted values if they are limited
            
-
            
-
            Returns:
            
-
            Permitted values
            
-
            
-
            • 
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          • 
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            setPermittedValues
            
-
            public void setPermittedValues(java.util.List<java.lang.String> permittedValues)
            
-
            Sets a list of permitted values if they are limited
            
-
            
-
            Parameters:
            
-
            permittedValues - Permitted values
            
-
            
-
            • 
-
          
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-
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-
            getRelationship
            
-
            public java.lang.String getRelationship()
            
-
            
-
            Returns:
            
-
            the relationship
            
-
            
-
            • 
-
          
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-
          • 
-
            setRelationship
            
-
            public void setRelationship(java.lang.String relationship)
            
-
            
-
            Parameters:
            
-
            relationship - the relationship to set
            
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diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValueDataType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValueDataType.html
deleted file mode 100644
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--- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValueDataType.html
+++ /dev/null
@@ -1,466 +0,0 @@
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      edu.harvard.hms.dbmi.bd2k.irct.model.query
      
-
      Enum PredicateTypeValueDataType
      
-
      
-
      
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        • 
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        All Implemented Interfaces:
        
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-
        
-
        
-
        
-
        public enum PredicateTypeValueDataType
-extends java.lang.Enum<PredicateTypeValueDataType>
        
-
        A list of possible predicate types available to the predicate
        
-
        
-
        Author:
        
-
        Jeremy R. Easton-Marks
        
-
        
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          All Methods Static Methods Concrete Methods 
          Modifier and TypeMethod and Description
          static PredicateTypeValueDataTypevalueOf(java.lang.String name)
-
          Returns the enum constant of this type with the specified name.
          
-
          static PredicateTypeValueDataType[]values()
-
          Returns an array containing the constants of this enum type, in
-the order they are declared.
          
-
          
-
            
-
          • 
-
-
-
            Methods inherited from class java.lang.Enum
            
-compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
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diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/Query.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/Query.html
index dfa55ba..ba602d1 100644
--- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/Query.html
+++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/Query.html
@@ -2,9 +2,9 @@
 
 
 
-
+
 Query
-
+
 
 
 
@@ -18,7 +18,7 @@
     catch(err) {
     }
 //-->
-var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10};
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10};
 var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
 var altColor = "altColor";
 var rowColor = "rowColor";
@@ -207,7 +207,7 @@ 
      Method Summary
      
 
 
 
-java.util.List<Resource>
+java.util.Set<Resource>
 getResources()
 
      Returns a list of resources that are associated with the query
      
 
@@ -258,7 +258,7 @@ 
      Method Summary
      
 
 
 void
-setResources(java.util.List<Resource> resources)
+setResources(java.util.Set<Resource> resources)
 
      Sets a list of resources that are associated with the query
      
 
 
@@ -281,13 +281,19 @@ 
      Method Summary
      
 
      Returns a JSONObject representation of the object.
      
 
 
+
+java.lang.String
+toString()
+
      Converts the query into a string
      
+
+
 
 
        
 
      • 
 
 
 
        Methods inherited from class java.lang.Object
        
-equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
        • 
+equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
    @@ -355,6 +361,20 @@

    toJson

    + + + +
      +
    • +

      toString

      +
      public java.lang.String toString()
      +
      Converts the query into a string
      +
      +
      Overrides:
      +
      toString in class java.lang.Object
      +
      +
      • +
    @@ -565,7 +585,7 @@

    removeResource

    • getResources

      -
      public java.util.List<Resource> getResources()
      +
      public java.util.Set<Resource> getResources()
      Returns a list of resources that are associated with the query
      Returns:
      @@ -573,13 +593,13 @@

      getResources

    - +

    • Methods inherited from class java.lang.Object

      -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
      • +equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/WhereClause.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/WhereClause.html index 4656f6d..8593a5b 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/WhereClause.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/WhereClause.html @@ -2,9 +2,9 @@ - + WhereClause - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/ClauseAbstract.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/ClauseAbstract.html index 873347a..c480a44 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/ClauseAbstract.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/ClauseAbstract.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.ClauseAbstract - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinClause.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinClause.html index 2ae6de6..7391d0a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinClause.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinClause.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.JoinClause - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinType.html index eec698f..d376ed2 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/JoinType.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.JoinType - + @@ -72,7 +72,139 @@

    Uses of Class
    edu.harvard.hms.dbmi.bd2k.irct.model.query.JoinType

    -
    No usage of edu.harvard.hms.dbmi.bd2k.irct.model.query.JoinType
    +
    + +
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/LogicalOperator.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/LogicalOperator.html deleted file mode 100644 index 7894cf1..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/LogicalOperator.html +++ /dev/null @@ -1,235 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.LogicalOperator - - - - - - - - -
    - - -
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    Uses of Class
    edu.harvard.hms.dbmi.bd2k.irct.model.query.PredicateTypeValue

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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/Query.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/Query.html index 3c7eaae..fb0a4ca 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/Query.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/Query.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.Query - + @@ -91,6 +91,14 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.model.query   @@ -187,6 +195,62 @@

    Uses of + + +

    Uses of Query in edu.harvard.hms.dbmi.bd2k.irct.event

    + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type Query 
    Modifier and TypeMethod and Description
    voidIRCTEventListener.afterQuery(SecureSession session, + Resource resource, + Query query) +
    Runs the event listeners after a query is run
    +
    voidIRCTEventListener.beforeQuery(SecureSession session, + Resource resource, + Query query) +
    Runs the event listeners before a query is run
    +
    + +
  • + + +

    Uses of Query in edu.harvard.hms.dbmi.bd2k.irct.event.action

    + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type Query 
    Modifier and TypeMethod and Description
    voidBeforeQuery.fire(SecureSession session, + Resource resource, + Query query) 
    voidAfterQuery.fire(SecureSession session, + Resource resource, + Query query) 
    +
  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SelectClause.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SelectClause.html index dfb0616..4303fa8 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SelectClause.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SelectClause.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.SelectClause - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SubQuery.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SubQuery.html index c096d05..7087d55 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SubQuery.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/SubQuery.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.SubQuery - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/WhereClause.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/WhereClause.html index b995ee6..c72f9d6 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/WhereClause.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/class-use/WhereClause.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.query.WhereClause - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-frame.html index c4ea594..8bc81df 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.query - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-summary.html index 09cfe01..fe07717 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.query - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-tree.html index e99d952..ab8e980 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.query Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-use.html index dc760df..8a2abd3 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.query - + @@ -91,6 +91,14 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + edu.harvard.hms.dbmi.bd2k.irct.model.query   @@ -133,12 +141,15 @@

    +JoinType  + + PredicateType
    The predicate type class provides a way for the IRCT application to keep track of which predicates can be used.
    - + Query
    The query class represents any query against any individual or group of resources.
    @@ -147,6 +158,42 @@

    + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.query used by edu.harvard.hms.dbmi.bd2k.irct.event 
    Class and Description
    Query +
    The query class represents any query against any individual or group of + resources.
    +
    +

    • +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.query used by edu.harvard.hms.dbmi.bd2k.irct.event.action 
    Class and Description
    Query +
    The query class represents any query against any individual or group of + resources.
    +
    +
  • @@ -162,18 +209,21 @@

    +JoinType  + + PredicateType
    The predicate type class provides a way for the IRCT application to keep track of which predicates can be used.
    - + Query
    The query class represents any query against any individual or group of resources.
    - + SubQuery
    A sub query may be part of a query or another sub query.
    @@ -191,6 +241,9 @@

    +JoinType  + + PredicateType
    The predicate type class provides a way for the IRCT application to keep track of which predicates can be used.
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/PredicateImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/PredicateImplementationInterface.html deleted file mode 100644 index 132dd66..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/PredicateImplementationInterface.html +++ /dev/null @@ -1,345 +0,0 @@ - - - - - -PredicateImplementationInterface - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.query.predicate
    -

    Interface PredicateImplementationInterface

    -
    -
    -
    -
      -
    • -
      -
      -
      public interface PredicateImplementationInterface
      -
      Provides an implementation that describes the API for any predicate that - needs to be run.
      -
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      Author:
      -
      Jeremy R. Easton-Marks
      -
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        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Abstract Methods 
        Modifier and TypeMethod and Description
        ResultSetrun() -
        Runs the predicate action and returns the computed results
        -
        voidsetAdditionalValue(java.lang.String additionalValue) -
        Sets the additional value (if needed) for the predicate action
        -
        voidsetResultSet(ResultSet resultset) -
        Sets the input result set that the predicate will be run on
        -
        voidsetValue(java.lang.String value) -
        Sets the value (if needed) for the predicate action
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSON representation of the implementing interface - - Equivalent to toJson(1);
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSON representation of the implementing interface while - converting children to JSON of a given depth
        -
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        Method Detail

        - - - -
          -
        • -

          setResultSet

          -
          void setResultSet(ResultSet resultset)
          -
          Sets the input result set that the predicate will be run on
          -
          -
          Parameters:
          -
          resultset - The input result set
          -
          -
          • -
        - - - -
          -
        • -

          setValue

          -
          void setValue(java.lang.String value)
          -
          Sets the value (if needed) for the predicate action
          -
          -
          Parameters:
          -
          value - Value
          -
          -
          • -
        - - - -
          -
        • -

          setAdditionalValue

          -
          void setAdditionalValue(java.lang.String additionalValue)
          -
          Sets the additional value (if needed) for the predicate action
          -
          -
          Parameters:
          -
          additionalValue - Additional Value
          -
          -
          • -
        - - - - - - - -
          -
        • -

          toJson

          -
          javax.json.JsonObject toJson()
          -
          Returns a JSON representation of the implementing interface - - Equivalent to toJson(1);
          -
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          javax.json.JsonObject toJson(int depth)
          -
          Returns a JSON representation of the implementing interface while - converting children to JSON of a given depth
          -
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
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          • -
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    Uses of Interface
    edu.harvard.hms.dbmi.bd2k.irct.model.query.predicate.PredicateImplementationInterface

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    edu.harvard.hms.dbmi.bd2k.irct.model.query.predicate

    -
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    Interfaces

    - -
    - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/package-use.html deleted file mode 100644 index 547275a..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/query/predicate/package-use.html +++ /dev/null @@ -1,182 +0,0 @@ - - - - - -Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.query.predicate - - - - - - - - -
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/Field.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/Field.html index a54b9ee..4eff197 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/Field.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/Field.html @@ -2,9 +2,9 @@ - + Field - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/LogicalOperator.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/LogicalOperator.html index f8a245f..cc7bb90 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/LogicalOperator.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/LogicalOperator.html @@ -2,9 +2,9 @@ - + LogicalOperator - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/PathResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/PathResourceImplementationInterface.html deleted file mode 100644 index 40ea8d3..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/PathResourceImplementationInterface.html +++ /dev/null @@ -1,358 +0,0 @@ - - - - - -PathResourceImplementationInterface - - - - - - - - -
    - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.resource
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    Interface PathResourceImplementationInterface

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        Method Detail

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          getPathRoot

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          java.util.List<Path> getPathRoot()
          -
          Get the root of the resource
          -
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          Returns:
          -
          Root
          -
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          • -
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          relationships

          -
          java.util.List<OntologyRelationship> relationships()
          -
          Returns the Ontology relationships
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          Returns:
          -
          Ontology Relationships
          -
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        - - - -
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          getRelationshipFromString

          -
          OntologyRelationship getRelationshipFromString(java.lang.String relationship)
          -
          Turns a string into a relationship
          -
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          Parameters:
          -
          relationship - String Representation
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          Returns:
          -
          Relationship
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          getOntologyType

          -
          OntologyType getOntologyType()
          -
          Get the ontology type of this resource
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          Returns:
          -
          Ontology Type
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        - - - -
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          getPathFromString

          -
          Path getPathFromString(java.lang.String path)
          -
          Turns a string into a path
          -
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          Parameters:
          -
          path - String representation
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          Returns:
          -
          Path
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    edu.harvard.hms.dbmi.bd2k.irct.model.resource
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    Interface ProcessResourceImplementationInterface

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        Method Detail

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          runProcess

          -
          ActionState runProcess(IRCTProcess pep)
          -
          Run the given process
          -
          -
          Parameters:
          -
          pep - Process to be run
          -
          Returns:
          -
          The id of the process that is running
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          getState

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          ResourceState getState()
          -
          Returns the status of the resource
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          Resource State
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    edu.harvard.hms.dbmi.bd2k.irct.model.resource
    -

    Interface QueryResourceImplementationInterface

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    • -
      -
      All Superinterfaces:
      -
      ResourceImplementationInterface
      -
      -
      -
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      public interface QueryResourceImplementationInterface
-extends ResourceImplementationInterface
      -
      Provides an implementation that describes the API for any resource that has - the ability to handle a query
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
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    Method Summary

    -java.util.List<IRCTJoin> +JoinType +getSupportedJoinByName(java.lang.String joinTypeName)  + + +java.util.List<JoinType> getSupportedJoins()
    Returns a list joins that are supported by the resource
    - + PredicateType getSupportedPredicateByName(java.lang.String predicateName)
    Returns a predicate type from its name.
    - + java.util.List<PredicateType> getSupportedPredicates()
    Returns a list of supported predicates that are supported by the resource
    - + java.util.List<ProcessType> getSupportedProcesses()
    Returns a list of process that are supported by the resource
    - + ProcessType getSupportedProcessesByName(java.lang.String processName)
    Returns a process type from its name.
    - + java.util.List<VisualizationType> getSupportedVisualizations()
    Returns a list of visualizations that are supported by the resource
    - + +boolean +isSetup()  + + void setDataTypes(java.util.List<DataType> dataTypes)
    Sets the list of data type that are supported by the resource
    - + void setId(long id)
    Sets the id of the resource
    - + void setImplementingInterface(ResourceImplementationInterface implementingInterface)
    Sets the implementing interface of the resource
    - + void setLogicalOperators(java.util.List<LogicalOperator> logicalOperators)
    Sets a list of logical operators that are supported by the resource
    - + void setName(java.lang.String name)
    Sets the name of the resource
    - + void setOntologyType(OntologyType ontologyType)
    Sets the ontology type of the resource
    - + void setParameters(java.util.Map<java.lang.String,java.lang.String> parameters)
    Sets a map of resources for the resource
    - + void setRelationships(java.util.List<OntologyRelationship> relationships)
    Sets the list of relationships that are supported by the resource
    - + +void +setSetup(boolean setup)  + + void -setSupportedJoins(java.util.List<IRCTJoin> supportedJoins) +setSupportedJoins(java.util.List<JoinType> supportedJoins)
    Sets the list joins that are supported by the resource
    - + void setSupportedPredicates(java.util.List<PredicateType> supportedPredicates)
    Sets the list of supported predicates that are supported by the resource
    - + void setSupportedProcesses(java.util.List<ProcessType> supportedProcesses)
    Sets the list of processes that are supported by the resource
    - + void setSupportedVisualizations(java.util.List<VisualizationType> supportedVisualizations)
    Sets a list of visualizations that are supported by the resource
    - + void setup()
    Sets up the Resource and the implementing interface
    - + javax.json.JsonObject toJson()
    Returns a JSONObject representation of the object.
    - + javax.json.JsonObject toJson(int depth)
    Returns a JSONObject representation of the object.
    @@ -520,6 +532,15 @@

    getDataTypeByName

    • + + + +
      +
    • +

      getSupportedJoinByName

      +
      public JoinType getSupportedJoinByName(java.lang.String joinTypeName)
      +
      • +
    @@ -750,7 +771,7 @@

    setSupportedPredicates

    • getSupportedJoins

      -
      public java.util.List<IRCTJoin> getSupportedJoins()
      +
      public java.util.List<JoinType> getSupportedJoins()
      Returns a list joins that are supported by the resource
      Returns:
      @@ -764,7 +785,7 @@

      getSupportedJoins

      • setSupportedJoins

        -
        public void setSupportedJoins(java.util.List<IRCTJoin> supportedJoins)
        +
        public void setSupportedJoins(java.util.List<JoinType> supportedJoins)
        Sets the list joins that are supported by the resource
        Parameters:
        @@ -845,7 +866,7 @@

        getParameters

        -
          +

          • setParameters

            public void setParameters(java.util.Map<java.lang.String,java.lang.String> parameters)
            @@ -856,6 +877,32 @@

            setParameters

      + + + +
        +
      • +

        isSetup

        +
        public boolean isSetup()
        +
        +
        Returns:
        +
        the setup
        +
        +
        • +
      + + + +
        +
      • +

        setSetup

        +
        public void setSetup(boolean setup)
        +
        +
        Parameters:
        +
        setup - the setup to set
        +
        +
        • +
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceImplementationInterface.html deleted file mode 100644 index 9b4b74a..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceImplementationInterface.html +++ /dev/null @@ -1,325 +0,0 @@ - - - - - -ResourceImplementationInterface - - - - - - - - -
    - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.resource
    -

    Interface ResourceImplementationInterface

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      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Abstract Methods 
        Modifier and TypeMethod and Description
        java.util.List<Path>getReturnEntity() -
        Returns a path representation of the default object that is returned
        -
        java.lang.StringgetType() -
        A string representation of the type of resource implementation this is
        -
        voidsetup(java.util.Map<java.lang.String,java.lang.String> parameters) -
        A set of parameters that can used to setup the Resource Implementation
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSON representation of the implementing interface - - Equivalent to toJson(1);
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSON representation of the implementing interface while - converting children to JSON of a given depth
        -
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        Method Detail

        - - - -
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          setup

          -
          void setup(java.util.Map<java.lang.String,java.lang.String> parameters)
          -
          A set of parameters that can used to setup the Resource Implementation
          -
          -
          Parameters:
          -
          parameters - Setup parameters
          -
          -
          • -
        - - - -
          -
        • -

          getType

          -
          java.lang.String getType()
          -
          A string representation of the type of resource implementation this is
          -
          -
          Returns:
          -
          Type
          -
          -
          • -
        - - - -
          -
        • -

          getReturnEntity

          -
          java.util.List<Path> getReturnEntity()
          -
          Returns a path representation of the default object that is returned
          -
          -
          Returns:
          -
          The default returned object
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          javax.json.JsonObject toJson()
          -
          Returns a JSON representation of the implementing interface - - Equivalent to toJson(1);
          -
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          javax.json.JsonObject toJson(int depth)
          -
          Returns a JSON representation of the implementing interface while - converting children to JSON of a given depth
          -
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
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        • -
      -
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    Skip navigation links
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceState.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceState.html index 87d5e17..facfe1f 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceState.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceState.html @@ -2,9 +2,9 @@ - + ResourceState - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Field.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Field.html index 69c2a2e..8754f82 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Field.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Field.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.resource.Field - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/LogicalOperator.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/LogicalOperator.html index 7c0cf8c..0ccd23a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/LogicalOperator.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/LogicalOperator.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.resource.LogicalOperator - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PathResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PathResourceImplementationInterface.html deleted file mode 100644 index 2808dc0..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PathResourceImplementationInterface.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.PathResourceImplementationInterface - - - - - - - - -
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    Uses of Interface
    edu.harvard.hms.dbmi.bd2k.irct.model.resource.PathResourceImplementationInterface

    -
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    No usage of edu.harvard.hms.dbmi.bd2k.irct.model.resource.PathResourceImplementationInterface
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PrimitiveDataType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PrimitiveDataType.html index 2f32fad..17f8a66 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PrimitiveDataType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/PrimitiveDataType.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.resource.PrimitiveDataType - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ProcessResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ProcessResourceImplementationInterface.html deleted file mode 100644 index df9528a..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ProcessResourceImplementationInterface.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.ProcessResourceImplementationInterface - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.resource.ProcessResourceImplementationInterface

    -
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    No usage of edu.harvard.hms.dbmi.bd2k.irct.model.resource.ProcessResourceImplementationInterface
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    edu.harvard.hms.dbmi.bd2k.irct.model.resource.QueryResourceImplementationInterface

    -
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    No usage of edu.harvard.hms.dbmi.bd2k.irct.model.resource.QueryResourceImplementationInterface
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Resource.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Resource.html index e73db39..54a7ccf 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Resource.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/Resource.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.resource.Resource - + @@ -95,10 +95,22 @@

      -edu.harvard.hms.dbmi.bd2k.irct.model.process +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.find   +edu.harvard.hms.dbmi.bd2k.irct.model.process +  + + edu.harvard.hms.dbmi.bd2k.irct.model.query   @@ -267,6 +279,15 @@

    Uses of java.lang.Long +QueryController.addJoinClause(java.lang.Long clauseId, + Resource resource, + JoinType joinType, + java.util.Map<java.lang.String,java.lang.String> joinFields) +
    Adds a join clause
    + + + +java.lang.Long QueryController.addSelectClause(java.lang.Long clauseId, Resource resource, Entity field, @@ -274,7 +295,7 @@

    Uses of Adds or updates a select clause

    - + java.lang.Long QueryController.addWhereClause(java.lang.Long clauseId, Resource resource, @@ -285,21 +306,11 @@

    Uses of Adds or updates a where clause to the query - -java.util.List<Entity> -PathController.searchForOntology(Resource resource, - Entity resourcePath, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
    Searches a resource for a given ontology term from a given ontology.
    - - java.util.List<Entity> -PathController.searchForTerm(Resource resource, +PathController.searchForTerm(Resource resource, Entity resourcePath, - java.lang.String searchTerm, + FindInformationInterface findInformation, SecureSession session)
    Searches a resource for a given searchTerm.
    @@ -324,6 +335,92 @@

    Uses of + + +

    Uses of Resource in edu.harvard.hms.dbmi.bd2k.irct.event

    + + + + + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type Resource 
    Modifier and TypeMethod and Description
    voidIRCTEventListener.afterQuery(SecureSession session, + Resource resource, + Query query) +
    Runs the event listeners after a query is run
    +
    voidIRCTEventListener.beforeFind(Resource resource, + Entity resourcePath, + java.util.List<FindInformationInterface> findInformation, + SecureSession session) +
    Runs the event listeners before a find is executed
    +
    voidIRCTEventListener.beforeQuery(SecureSession session, + Resource resource, + Query query) +
    Runs the event listeners before a query is run
    +
    + +
  • + + +

    Uses of Resource in edu.harvard.hms.dbmi.bd2k.irct.event.action

    + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type Resource 
    Modifier and TypeMethod and Description
    voidBeforeQuery.fire(SecureSession session, + Resource resource, + Query query) 
    voidAfterQuery.fire(SecureSession session, + Resource resource, + Query query) 
    +
    • +
  • + + +

    Uses of Resource in edu.harvard.hms.dbmi.bd2k.irct.event.find

    + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.find with parameters of type Resource 
    Modifier and TypeMethod and Description
    voidBeforeFind.fire(Resource resource, + Entity resourcePath, + java.util.List<FindInformationInterface> findInformation, + SecureSession session) 
    +
  • @@ -371,7 +468,7 @@

    Uses of -java.util.List<Resource> +java.util.Set<Resource> Query.getResources()
    Returns a list of resources that are associated with the query
    @@ -408,7 +505,7 @@

    Uses of void -Query.setResources(java.util.List<Resource> resources) +Query.setResources(java.util.Set<Resource> resources)
    Sets a list of resources that are associated with the query
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceImplementationInterface.html deleted file mode 100644 index 88cf02e..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceImplementationInterface.html +++ /dev/null @@ -1,246 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.ResourceImplementationInterface - - - - - - - - -
    - - -
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    Uses of Interface
    edu.harvard.hms.dbmi.bd2k.irct.model.resource.ResourceImplementationInterface

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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceState.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceState.html index ef6d000..4b6effe 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceState.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/class-use/ResourceState.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.resource.ResourceState - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/PathResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/PathResourceImplementationInterface.html index de66526..75c7445 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/PathResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/PathResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + PathResourceImplementationInterface - + @@ -18,7 +18,7 @@ catch(err) { } //--> -var methods = {"i0":6,"i1":6,"i2":6}; +var methods = {"i0":6,"i1":6}; var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]}; var altColor = "altColor"; var rowColor = "rowColor"; @@ -133,28 +133,18 @@

    Method Summary

    java.util.List<Entity> -getPathRelationship(Entity path, - OntologyRelationship relationship, - SecureSession session) -
    Given a path give all the associated paths of that type of relationship
    +find(Entity path, + FindInformationInterface findInformation, + SecureSession session) +
    Given a path find all entities that match the finds
    java.util.List<Entity> -searchOntology(Entity path, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
    Given a given path find all the ontology terms of the given ontology type - that are in that path.
    - - - -java.util.List<Entity> -searchPaths(Entity path, - java.lang.String searchTerm, - SecureSession session) -
    Given a given path find all the searchTerms that are in that path.
    +getPathRelationship(Entity path, + OntologyRelationship relationship, + SecureSession session) +
    Given a path give all the associated paths of that type of relationship
    @@ -202,49 +192,22 @@

    getPathRelationship

    • - - - -
      -
    • -

      searchPaths

      -
      java.util.List<Entity> searchPaths(Entity path,
-                                   java.lang.String searchTerm,
-                                   SecureSession session)
-                            throws ResourceInterfaceException
      -
      Given a given path find all the searchTerms that are in that path. If - path is null search the entire resource
      -
      -
      Parameters:
      -
      path - Path
      -
      searchTerm - Search Term
      -
      session - Secure Session
      -
      Returns:
      -
      Paths
      -
      Throws:
      -
      ResourceInterfaceException - A resource exception occurred
      -
      -
      • -
    - +
    • -

      searchOntology

      -
      java.util.List<Entity> searchOntology(Entity path,
-                                      java.lang.String ontologyType,
-                                      java.lang.String ontologyTerm,
-                                      SecureSession session)
-                               throws ResourceInterfaceException
      -
      Given a given path find all the ontology terms of the given ontology type - that are in that path. If the path is null search the entire resource
      +

      find

      +
      java.util.List<Entity> find(Entity path,
+                            FindInformationInterface findInformation,
+                            SecureSession session)
+                     throws ResourceInterfaceException
      +
      Given a path find all entities that match the finds
      Parameters:
      path - Path
      -
      ontologyType - Ontology Type
      -
      ontologyTerm - Ontology Term
      -
      session - Secure Session
      +
      find - Find Data
      +
      session - Session
      Returns:
      Paths
      Throws:
      diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ProcessResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ProcessResourceImplementationInterface.html index 5bc3396..eb7df16 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ProcessResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ProcessResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + ProcessResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/QueryResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/QueryResourceImplementationInterface.html index 2d5c218..9e18db5 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/QueryResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/QueryResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + QueryResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ResourceImplementationInterface.html index a27debf..c4eeb04 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/ResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + ResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/VisualizationResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/VisualizationResourceImplementationInterface.html index 0bee8f0..fb2fab9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/VisualizationResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/VisualizationResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + VisualizationResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/PathResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/PathResourceImplementationInterface.html index 6507435..09ae6d9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/PathResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/PathResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation.PathResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ProcessResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ProcessResourceImplementationInterface.html index 749b98f..44d0b17 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ProcessResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ProcessResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation.ProcessResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/QueryResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/QueryResourceImplementationInterface.html index 311f4f7..929fe5c 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/QueryResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/QueryResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation.QueryResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ResourceImplementationInterface.html index e324af8..7bc3679 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/ResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation.ResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/VisualizationResourceImplementationInterface.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/VisualizationResourceImplementationInterface.html index 0b35b3e..690c1a4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/VisualizationResourceImplementationInterface.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/class-use/VisualizationResourceImplementationInterface.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation.VisualizationResourceImplementationInterface - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-frame.html index b1dbf0e..f64a559 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-summary.html index 84a54d4..33eb5b6 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-tree.html index d066f68..814ef53 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-use.html index 2afe8ad..ab467c0 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/implementation/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-frame.html index 0a82a77..a1320c5 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.resource - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-summary.html index 478c48a..c4554a4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.resource - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-tree.html index e324cd4..77b2f7d 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.resource Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-use.html index dd34c67..2be28a4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/resource/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.resource - + @@ -95,30 +95,42 @@

        -edu.harvard.hms.dbmi.bd2k.irct.model.join +edu.harvard.hms.dbmi.bd2k.irct.event   -edu.harvard.hms.dbmi.bd2k.irct.model.process +edu.harvard.hms.dbmi.bd2k.irct.event.action   -edu.harvard.hms.dbmi.bd2k.irct.model.query +edu.harvard.hms.dbmi.bd2k.irct.event.find   -edu.harvard.hms.dbmi.bd2k.irct.model.resource +edu.harvard.hms.dbmi.bd2k.irct.model.join   -edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation +edu.harvard.hms.dbmi.bd2k.irct.model.process   -edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular +edu.harvard.hms.dbmi.bd2k.irct.model.query +  + + +edu.harvard.hms.dbmi.bd2k.irct.model.resource +  + + +edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation   +edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular +  + + edu.harvard.hms.dbmi.bd2k.irct.model.visualization   @@ -190,6 +202,60 @@

      • +
    • + + + + + + + + + + + + +
      Classes in edu.harvard.hms.dbmi.bd2k.irct.model.resource used by edu.harvard.hms.dbmi.bd2k.irct.event 
      Class and Description
      Resource +
      The resource class provides a way for the IRCT application to keep track of + which resources are available.
      +
      +
      • +
    • + + + + + + + + + + + + +
      Classes in edu.harvard.hms.dbmi.bd2k.irct.model.resource used by edu.harvard.hms.dbmi.bd2k.irct.event.action 
      Class and Description
      Resource +
      The resource class provides a way for the IRCT application to keep track of + which resources are available.
      +
      +
      • +
    • + + + + + + + + + + + + +
      Classes in edu.harvard.hms.dbmi.bd2k.irct.model.resource used by edu.harvard.hms.dbmi.bd2k.irct.event.find 
      Class and Description
      Resource +
      The resource class provides a way for the IRCT application to keep track of + which resources are available.
      +
      +
    • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Data.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Data.html index 6744771..cf725f3 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Data.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Data.html @@ -2,9 +2,9 @@ - + Data - + @@ -18,6 +18,12 @@ catch(err) { } //--> +var methods = {"i0":6}; +var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]}; +var altColor = "altColor"; +var rowColor = "rowColor"; +var tableTab = "tableTab"; +var activeTableTab = "activeTableTab";
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    @@ -112,6 +118,54 @@

    Interface Data

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        Method Detail

        + + + +
          +
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          getFileList

          +
          java.util.List<java.io.File> getFileList()
          +
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      +
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    +
    @@ -163,13 +217,13 @@

    Interface Data

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    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/DataConverterImplementation.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/DataConverterImplementation.html index 609a124..c1f2714 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/DataConverterImplementation.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/DataConverterImplementation.html @@ -2,9 +2,9 @@ - + DataConverterImplementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/FileResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/FileResultSet.html deleted file mode 100644 index 3752d1b..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/FileResultSet.html +++ /dev/null @@ -1,1875 +0,0 @@ - - - - - -FileResultSet - - - - - - - - -
    - - -
    Skip navigation links
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    • Summary: 
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    edu.harvard.hms.dbmi.bd2k.irct.model.result
    -

    Class FileResultSet

    -
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    - -
    -
      -
    • -
      -
      All Implemented Interfaces:
      -
      Joinable, Persistable, ResultSet
      -
      -
      -
      -
      public class FileResultSet
-extends ResultSetImpl
-implements Persistable
      -
      An implementation of a Result Set that is persistable to the file system
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
      -
      • -
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    • - -
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      • - - -

        Constructor Summary

        - - - - - - - - -
        Constructors 
        Constructor and Description
        FileResultSet() 
        -
        • -
      - -
        -
      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        booleanabsolute(long newRow) -
        Moves the cursor to the given row number in the ResultSet
        -
        voidafterLast() -
        Moves the cursor to the end of the ResultSet, after the last row.
        -
        voidappendRow() -
        Adds a new row to the file result set
        -
        voidbeforeFirst() -
        Moves the cursor to the beginning of the ResultSet object, before the - first row.
        -
        booleanfirst() -
        Moves the cursor to the first row of the ResultSet object.
        -
        booleangetBoolean(int columnIndex) -
        Retrieves the boolean value of the given column position at the current - row
        -
        booleangetBoolean(java.lang.String columnLabel) -
        Retrieves the boolean value of the given column at the current row
        -
        bytegetByte(int columnIndex) -
        Retrieves the byte value of the given column position at the current row
        -
        bytegetByte(java.lang.String columnLabel) -
        Retrieves the byte value of the given column at the current row
        -
        java.util.DategetDate(int columnIndex) -
        Retrieves the Date value of the given column position at the current row
        -
        java.util.DategetDate(java.lang.String columnLabel) -
        Retrieves the Date value of the given column at the current row
        -
        doublegetDouble(int columnIndex) -
        Retrieves the double value of the given column position at the current - row
        -
        doublegetDouble(java.lang.String columnLabel) -
        Retrieves the double value of the given column at the current row
        -
        floatgetFloat(int columnIndex) -
        Retrieves the float value of the given column position at the current row
        -
        floatgetFloat(java.lang.String columnLabel) -
        Retrieves the float value of the given column at the current row
        -
        intgetInt(int columnIndex) -
        Retrieves the int value of the given column position at the current row
        -
        intgetInt(java.lang.String columnLabel) -
        Retrieves the int value of the given column at the current row
        -
        longgetLong(int columnIndex) -
        Retrieves the long value of the given column position at the current row
        -
        longgetLong(java.lang.String columnLabel) -
        Retrieves the long value of the given column at the current row
        -
        java.lang.ObjectgetObject(int columnIndex) -
        Returns an object representation of the value at the given column index
        -
        longgetRow() -
        Returns the current position of the cursor in the ResultSet object
        -
        longgetSize() -
        Returns the size of the ResultSetObject
        -
        java.lang.StringgetString(int columnIndex) -
        Retrieves the String value of the given column position at the current - row
        -
        java.lang.StringgetString(java.lang.String columnLabel) -
        Retrieves the String value of the given column at the current row
        -
        booleanisAvailable(java.lang.String location) -
        Returns if the result set can be loaded.
        -
        booleanisCurrent() -
        Returns if the current result set has been persisted.
        -
        booleanisPersisted() -
        Returns true if the Result Set has been persisted
        -
        booleanlast() -
        Moves the cursor to the last row in the ResultSet object
        -
        voidload(java.lang.String fileName) -
        Load the Result Set from the location specified
        -
        voidmerge() -
        Updates the current persisted state with any changes
        -
        booleannext() -
        Moves the cursor to the next row of the ResultSet object
        -
        voidpersist() -
        Persists the result set to the long term storage
        -
        voidpersist(java.lang.String fileName) -
        Persists the result set to the long term storage
        -
        booleanprevious() -
        Moves the cursor to the previous row in the ResultSet object
        -
        voidrefresh() -
        Refreshes the result set with the persisted state.
        -
        booleanrelative(long rows) -
        Moves the cursor a given number of rows forward
        -
        javax.json.JsonObjecttoJson() -
        Returns a JSONObject representation of the object.
        -
        javax.json.JsonObjecttoJson(int depth) -
        Returns a JSONObject representation of the object.
        -
        voidupdateBoolean(int columnIndex, - boolean value) -
        Updates the boolean value of the given column position at the current row
        -
        voidupdateBoolean(java.lang.String columnLabel, - boolean value) -
        Updates the boolean value of the given column at the current row
        -
        voidupdateByte(int columnIndex, - byte value) -
        Updates the byte value of the given column position at the current row
        -
        voidupdateByte(java.lang.String columnLabel, - byte value) -
        Updates the byte value of the given column at the current row
        -
        voidupdateDate(int columnIndex, - java.util.Date value) -
        Updates the Date value of the given column position at the current row
        -
        voidupdateDate(java.lang.String columnLabel, - java.util.Date value) -
        Updates the Date value of the given column at the current row
        -
        voidupdateDouble(int columnIndex, - double value) -
        Updates the double value of the given column position at the current row
        -
        voidupdateDouble(java.lang.String columnLabel, - double value) -
        Updates the double value of the given column at the current row
        -
        voidupdateFloat(int columnIndex, - float value) -
        Updates the float value of the given column position at the current row
        -
        voidupdateFloat(java.lang.String columnLabel, - float value) -
        Updates the float value of the given column at the current row
        -
        voidupdateInt(int columnIndex, - int value) -
        Updates the int value of the given column position at the current row
        -
        voidupdateInt(java.lang.String columnLabel, - int value) -
        Updates the int value of the given column at the current row
        -
        voidupdateLong(int columnIndex, - long value) -
        Updates the long value of the given column position at the current row
        -
        voidupdateLong(java.lang.String columnLabel, - long value) -
        Updates the long value of the given column at the current row
        -
        voidupdateObject(int columnIndex, - java.lang.Object obj) -
        Updates the column with an object representation of the value
        -
        voidupdateString(int columnIndex, - java.lang.String value) -
        Updates the String value of the given column position at the current row
        -
        voidupdateString(java.lang.String columnLabel, - java.lang.String value) -
        Updates the String value of the given column at the current row
        -
        - -
          -
        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
          • -
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        Constructor Detail

        - - - -
          -
        • -

          FileResultSet

          -
          public FileResultSet()
          -
          • -
        -
        • -
      - -
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      • - - -

        Method Detail

        - - - -
          -
        • -

          isAvailable

          -
          public boolean isAvailable(java.lang.String location)
          -
          Description copied from interface: Persistable
          -
          Returns if the result set can be loaded.
          -
          -
          Specified by:
          -
          isAvailable in interface Persistable
          -
          Parameters:
          -
          location - Location of the Result Set
          -
          Returns:
          -
          Available
          -
          -
          • -
        - - - - - - - - - - - - - - - -
          -
        • -

          absolute

          -
          public boolean absolute(long newRow)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the given row number in the ResultSet
          -
          -
          Specified by:
          -
          absolute in interface ResultSet
          -
          Overrides:
          -
          absolute in class ResultSetImpl
          -
          Parameters:
          -
          newRow - The row to move to
          -
          Returns:
          -
          true if the cursor moved successfully, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - - - - - - - - - -
          -
        • -

          first

          -
          public boolean first()
-              throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the first row of the ResultSet object.
          -
          -
          Specified by:
          -
          first in interface ResultSet
          -
          Overrides:
          -
          first in class ResultSetImpl
          -
          Returns:
          -
          true if moved to the first row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          last

          -
          public boolean last()
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the last row in the ResultSet object
          -
          -
          Specified by:
          -
          last in interface ResultSet
          -
          Overrides:
          -
          last in class ResultSetImpl
          -
          Returns:
          -
          true if the cursor moved to the new row
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          next

          -
          public boolean next()
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the next row of the ResultSet object
          -
          -
          Specified by:
          -
          next in interface ResultSet
          -
          Overrides:
          -
          next in class ResultSetImpl
          -
          Returns:
          -
          true if moved to the next row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          relative

          -
          public boolean relative(long rows)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor a given number of rows forward
          -
          -
          Specified by:
          -
          relative in interface ResultSet
          -
          Overrides:
          -
          relative in class ResultSetImpl
          -
          Parameters:
          -
          rows - The number of rows to move forward
          -
          Returns:
          -
          true if the cursor moved to the new row
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          previous

          -
          public boolean previous()
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the previous row in the ResultSet object
          -
          -
          Specified by:
          -
          previous in interface ResultSet
          -
          Overrides:
          -
          previous in class ResultSetImpl
          -
          Returns:
          -
          true if the cursor moved to the previous row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getRow

          -
          public long getRow()
-            throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Returns the current position of the cursor in the ResultSet object
          -
          -
          Specified by:
          -
          getRow in interface ResultSet
          -
          Overrides:
          -
          getRow in class ResultSetImpl
          -
          Returns:
          -
          The position of the cursor in the ResultSet object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          persist

          -
          public void persist(java.lang.String fileName)
-             throws PersistableException
          -
          Description copied from interface: Persistable
          -
          Persists the result set to the long term storage
          -
          -
          Specified by:
          -
          persist in interface Persistable
          -
          Parameters:
          -
          fileName - Location
          -
          Throws:
          -
          PersistableException - An error occur persisting the object
          -
          -
          • -
        - - - - - - - - - - - -
          -
        • -

          refresh

          -
          public void refresh()
-             throws PersistableException
          -
          Description copied from interface: Persistable
          -
          Refreshes the result set with the persisted state. It will over ride any - entries that have not been merged.
          -
          -
          Specified by:
          -
          refresh in interface Persistable
          -
          Throws:
          -
          PersistableException - An error occur refreshing the object
          -
          -
          • -
        - - - -
          -
        • -

          isCurrent

          -
          public boolean isCurrent()
          -
          Description copied from interface: Persistable
          -
          Returns if the current result set has been persisted. - - True if no updates are pending for an update or persist False if an - update is pending
          -
          -
          Specified by:
          -
          isCurrent in interface Persistable
          -
          Returns:
          -
          Current state
          -
          -
          • -
        - - - -
          -
        • -

          isPersisted

          -
          public boolean isPersisted()
          -
          Description copied from interface: Persistable
          -
          Returns true if the Result Set has been persisted
          -
          -
          Specified by:
          -
          isPersisted in interface Persistable
          -
          Returns:
          -
          Persisted state
          -
          -
          • -
        - - - -
          -
        • -

          getBoolean

          -
          public boolean getBoolean(int columnIndex)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the boolean value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getBoolean in interface ResultSet
          -
          Overrides:
          -
          getBoolean in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          -
          • -
        - - - -
          -
        • -

          getBoolean

          -
          public boolean getBoolean(java.lang.String columnLabel)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the boolean value of the given column at the current row
          -
          -
          Specified by:
          -
          getBoolean in interface ResultSet
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          Overrides:
          -
          getBoolean in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
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          updateBoolean

          -
          public void updateBoolean(int columnIndex,
-                          boolean value)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the boolean value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateBoolean in interface ResultSet
          -
          Overrides:
          -
          updateBoolean in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
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        - - - -
          -
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          updateBoolean

          -
          public void updateBoolean(java.lang.String columnLabel,
-                          boolean value)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the boolean value of the given column at the current row
          -
          -
          Specified by:
          -
          updateBoolean in interface ResultSet
          -
          Overrides:
          -
          updateBoolean in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getByte

          -
          public byte getByte(int columnIndex)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the byte value of the given column position at the current row
          -
          -
          Specified by:
          -
          getByte in interface ResultSet
          -
          Overrides:
          -
          getByte in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getByte

          -
          public byte getByte(java.lang.String columnLabel)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the byte value of the given column at the current row
          -
          -
          Specified by:
          -
          getByte in interface ResultSet
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          Overrides:
          -
          getByte in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
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          • -
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          updateByte

          -
          public void updateByte(int columnIndex,
-                       byte value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the byte value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateByte in interface ResultSet
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          Overrides:
          -
          updateByte in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateByte

          -
          public void updateByte(java.lang.String columnLabel,
-                       byte value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the byte value of the given column at the current row
          -
          -
          Specified by:
          -
          updateByte in interface ResultSet
          -
          Overrides:
          -
          updateByte in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDate

          -
          public java.util.Date getDate(int columnIndex)
-                       throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the Date value of the given column position at the current row
          -
          -
          Specified by:
          -
          getDate in interface ResultSet
          -
          Overrides:
          -
          getDate in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDate

          -
          public java.util.Date getDate(java.lang.String columnLabel)
-                       throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the Date value of the given column at the current row
          -
          -
          Specified by:
          -
          getDate in interface ResultSet
          -
          Overrides:
          -
          getDate in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDate

          -
          public void updateDate(int columnIndex,
-                       java.util.Date value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the Date value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateDate in interface ResultSet
          -
          Overrides:
          -
          updateDate in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDate

          -
          public void updateDate(java.lang.String columnLabel,
-                       java.util.Date value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the Date value of the given column at the current row
          -
          -
          Specified by:
          -
          updateDate in interface ResultSet
          -
          Overrides:
          -
          updateDate in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDouble

          -
          public double getDouble(int columnIndex)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the double value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getDouble in interface ResultSet
          -
          Overrides:
          -
          getDouble in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDouble

          -
          public double getDouble(java.lang.String columnLabel)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the double value of the given column at the current row
          -
          -
          Specified by:
          -
          getDouble in interface ResultSet
          -
          Overrides:
          -
          getDouble in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDouble

          -
          public void updateDouble(int columnIndex,
-                         double value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the double value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateDouble in interface ResultSet
          -
          Overrides:
          -
          updateDouble in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDouble

          -
          public void updateDouble(java.lang.String columnLabel,
-                         double value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the double value of the given column at the current row
          -
          -
          Specified by:
          -
          updateDouble in interface ResultSet
          -
          Overrides:
          -
          updateDouble in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getFloat

          -
          public float getFloat(int columnIndex)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the float value of the given column position at the current row
          -
          -
          Specified by:
          -
          getFloat in interface ResultSet
          -
          Overrides:
          -
          getFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getFloat

          -
          public float getFloat(java.lang.String columnLabel)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the float value of the given column at the current row
          -
          -
          Specified by:
          -
          getFloat in interface ResultSet
          -
          Overrides:
          -
          getFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateFloat

          -
          public void updateFloat(int columnIndex,
-                        float value)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the float value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateFloat in interface ResultSet
          -
          Overrides:
          -
          updateFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateFloat

          -
          public void updateFloat(java.lang.String columnLabel,
-                        float value)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the float value of the given column at the current row
          -
          -
          Specified by:
          -
          updateFloat in interface ResultSet
          -
          Overrides:
          -
          updateFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getInt

          -
          public int getInt(int columnIndex)
-           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the int value of the given column position at the current row
          -
          -
          Specified by:
          -
          getInt in interface ResultSet
          -
          Overrides:
          -
          getInt in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getInt

          -
          public int getInt(java.lang.String columnLabel)
-           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the int value of the given column at the current row
          -
          -
          Specified by:
          -
          getInt in interface ResultSet
          -
          Overrides:
          -
          getInt in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          public void updateInt(int columnIndex,
-                      int value)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the int value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateInt in interface ResultSet
          -
          Overrides:
          -
          updateInt in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          public void updateInt(java.lang.String columnLabel,
-                      int value)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the int value of the given column at the current row
          -
          -
          Specified by:
          -
          updateInt in interface ResultSet
          -
          Overrides:
          -
          updateInt in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          public long getLong(int columnIndex)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the long value of the given column position at the current row
          -
          -
          Specified by:
          -
          getLong in interface ResultSet
          -
          Overrides:
          -
          getLong in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          public long getLong(java.lang.String columnLabel)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the long value of the given column at the current row
          -
          -
          Specified by:
          -
          getLong in interface ResultSet
          -
          Overrides:
          -
          getLong in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          public void updateLong(int columnIndex,
-                       long value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the long value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateLong in interface ResultSet
          -
          Overrides:
          -
          updateLong in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          public void updateLong(java.lang.String columnLabel,
-                       long value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the long value of the given column at the current row
          -
          -
          Specified by:
          -
          updateLong in interface ResultSet
          -
          Overrides:
          -
          updateLong in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          public java.lang.String getString(int columnIndex)
-                           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the String value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getString in interface ResultSet
          -
          Overrides:
          -
          getString in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          public java.lang.String getString(java.lang.String columnLabel)
-                           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the String value of the given column at the current row
          -
          -
          Specified by:
          -
          getString in interface ResultSet
          -
          Overrides:
          -
          getString in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          public void updateString(int columnIndex,
-                         java.lang.String value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the String value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateString in interface ResultSet
          -
          Overrides:
          -
          updateString in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          public void updateString(java.lang.String columnLabel,
-                         java.lang.String value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the String value of the given column at the current row
          -
          -
          Specified by:
          -
          updateString in interface ResultSet
          -
          Overrides:
          -
          updateString in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getObject

          -
          public java.lang.Object getObject(int columnIndex)
-                           throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Returns an object representation of the value at the given column index
          -
          -
          Specified by:
          -
          getObject in interface Joinable
          -
          Overrides:
          -
          getObject in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          Returns:
          -
          The column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateObject

          -
          public void updateObject(int columnIndex,
-                         java.lang.Object obj)
-                  throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Updates the column with an object representation of the value
          -
          -
          Specified by:
          -
          updateObject in interface Joinable
          -
          Overrides:
          -
          updateObject in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          obj - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson()
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation. - - This is equivalent of toJson(1);
          -
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        - - - -
          -
        • -

          toJson

          -
          public javax.json.JsonObject toJson(int depth)
          -
          Returns a JSONObject representation of the object. This returns only the - attributes associated with this object and not their representation.
          -
          -
          Parameters:
          -
          depth - Depth to travel
          -
          Returns:
          -
          JSON Representation
          -
          -
          • -
        -
        • -
      -
      • -
    -
    -
    - - -
    - - -
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Joinable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Joinable.html deleted file mode 100644 index 0eaf05b..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Joinable.html +++ /dev/null @@ -1,502 +0,0 @@ - - - - - -Joinable - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result
    -

    Interface Joinable

    -
    -
    -
    -
      -
    • -
      -
      All Known Implementing Classes:
      -
      FileResultSet, MemoryResultSet, ResultSetImpl
      -
      -
      -
      -
      public interface Joinable
      -
      The Joinable interface provides a means for different ResultSets to be - combined. Different types of Joins can implement this interface which - provides the basis for setting the columns that will be joined upon.
      -
      -
      Version:
      -
      1.0
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Abstract Methods 
        Modifier and TypeMethod and Description
        int[]getMatchColumnIndexes() -
        Gets the indexes of the columns that are to be matched
        -
        java.lang.String[]getMatchColumnNames() -
        Gets the names of the columns that are to be matched
        -
        java.lang.ObjectgetObject(int columnIndex) -
        Returns an object representation of the value at the given column index
        -
        voidsetMatchColumn(int columnIndex) -
        Sets the designated column index to be joined on
        -
        voidsetMatchColumn(int[] columnIndexes) -
        Sets the designated columns by index to be joined on
        -
        voidsetMatchColumn(java.lang.String columnLabel) -
        Sets the designated column label to be joined on
        -
        voidsetMatchColumns(java.lang.String[] columnLabels) -
        Sets the designated columns by label to be joined on
        -
        voidunsetMatchColumn(int columnIndex) -
        Unsets the given column as a joining column
        -
        voidunsetMatchColumn(int[] columnIndexes) -
        Unsets the given columns as a joining column
        -
        voidunsetMatchColumn(java.lang.String columnLabel) -
        Unsets the given column as a joining column
        -
        voidunsetMatchColumn(java.lang.String[] columnLabels) -
        Unsets the given columns as a joining column
        -
        voidupdateObject(int columnIndex, - java.lang.Object obj) -
        Updates the column with an object representation of the value
        -
        -
        • -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Method Detail

        - - - -
          -
        • -

          getObject

          -
          java.lang.Object getObject(int columnIndex)
-                    throws ResultSetException
          -
          Returns an object representation of the value at the given column index
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          Returns:
          -
          The column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateObject

          -
          void updateObject(int columnIndex,
-                  java.lang.Object obj)
-           throws ResultSetException
          -
          Updates the column with an object representation of the value
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          obj - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getMatchColumnIndexes

          -
          int[] getMatchColumnIndexes()
-                     throws ResultSetException
          -
          Gets the indexes of the columns that are to be matched
          -
          -
          Returns:
          -
          an int array of column indexes that are set as matched columns
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getMatchColumnNames

          -
          java.lang.String[] getMatchColumnNames()
-                                throws ResultSetException
          -
          Gets the names of the columns that are to be matched
          -
          -
          Returns:
          -
          a string array of column indexes that are set as matched columns
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumn

          -
          void setMatchColumn(int columnIndex)
-             throws ResultSetException
          -
          Sets the designated column index to be joined on
          -
          -
          Parameters:
          -
          columnIndex - the column index to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumn

          -
          void setMatchColumn(int[] columnIndexes)
-             throws ResultSetException
          -
          Sets the designated columns by index to be joined on
          -
          -
          Parameters:
          -
          columnIndexes - the column indexes to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumn

          -
          void setMatchColumn(java.lang.String columnLabel)
-             throws ResultSetException
          -
          Sets the designated column label to be joined on
          -
          -
          Parameters:
          -
          columnLabel - the column index to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumns

          -
          void setMatchColumns(java.lang.String[] columnLabels)
-              throws ResultSetException
          -
          Sets the designated columns by label to be joined on
          -
          -
          Parameters:
          -
          columnLabels - the column labels to join on
          -
          Throws:
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          ResultSetException - If a ResultSetException occurs
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          unsetMatchColumn

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          void unsetMatchColumn(int columnIndex)
-               throws ResultSetException
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          Unsets the given column as a joining column
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          columnIndex - the index of the column to no longer match on
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          ResultSetException - If a ResultSetException occurs
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          unsetMatchColumn

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          void unsetMatchColumn(int[] columnIndexes)
-               throws ResultSetException
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          Unsets the given columns as a joining column
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          Parameters:
          -
          columnIndexes - the indexes of the column to no longer match on
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          unsetMatchColumn

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          void unsetMatchColumn(java.lang.String columnLabel)
-               throws ResultSetException
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          Unsets the given column as a joining column
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          Parameters:
          -
          columnLabel - the label of the column to no longer match on
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          unsetMatchColumn

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          void unsetMatchColumn(java.lang.String[] columnLabels)
-               throws ResultSetException
          -
          Unsets the given columns as a joining column
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          Parameters:
          -
          columnLabels - the index of the column to no longer match on
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/MemoryResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/MemoryResultSet.html deleted file mode 100644 index 85d90bb..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/MemoryResultSet.html +++ /dev/null @@ -1,1372 +0,0 @@ - - - - - -MemoryResultSet - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result
    -

    Class MemoryResultSet

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      All Implemented Interfaces:
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      Joinable, ResultSet
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      public class MemoryResultSet
-extends ResultSetImpl
      -
      The memory ResultSet stores a result set in JVM memory. It is a fast - implementation that provides a way to handle small data sets.
      -
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      Author:
      -
      Jeremy R. Easton-Marks
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        Constructor Summary

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        Constructors 
        Constructor and Description
        MemoryResultSet() 
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        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        voidappendRow() -
        Adds a new row to the memory result set
        -
        booleangetBoolean(int columnIndex) -
        Retrieves the boolean value of the given column position at the current - row
        -
        booleangetBoolean(java.lang.String columnLabel) -
        Retrieves the boolean value of the given column at the current row
        -
        bytegetByte(int columnIndex) -
        Retrieves the byte value of the given column position at the current row
        -
        bytegetByte(java.lang.String columnLabel) -
        Retrieves the byte value of the given column at the current row
        -
        java.util.DategetDate(int columnIndex) -
        Retrieves the Date value of the given column position at the current row
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        java.util.DategetDate(java.lang.String columnLabel) -
        Retrieves the Date value of the given column at the current row
        -
        doublegetDouble(int columnIndex) -
        Retrieves the double value of the given column position at the current - row
        -
        doublegetDouble(java.lang.String columnLabel) -
        Retrieves the double value of the given column at the current row
        -
        floatgetFloat(int columnIndex) -
        Retrieves the float value of the given column position at the current row
        -
        floatgetFloat(java.lang.String columnLabel) -
        Retrieves the float value of the given column at the current row
        -
        intgetInt(int columnIndex) -
        Retrieves the int value of the given column position at the current row
        -
        intgetInt(java.lang.String columnLabel) -
        Retrieves the int value of the given column at the current row
        -
        longgetLong(int columnIndex) -
        Retrieves the long value of the given column position at the current row
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        longgetLong(java.lang.String columnLabel) -
        Retrieves the long value of the given column at the current row
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        java.lang.ObjectgetObject(int columnIndex) -
        Returns an object representation of the value at the given column index
        -
        longgetSize() -
        Returns the size of the ResultSetObject
        -
        java.lang.StringgetString(int columnIndex) -
        Retrieves the String value of the given column position at the current - row
        -
        java.lang.StringgetString(java.lang.String columnLabel) -
        Retrieves the String value of the given column at the current row
        -
        voidupdateBoolean(int columnIndex, - boolean value) -
        Updates the boolean value of the given column position at the current row
        -
        voidupdateBoolean(java.lang.String columnLabel, - boolean value) -
        Updates the boolean value of the given column at the current row
        -
        voidupdateByte(int columnIndex, - byte value) -
        Updates the byte value of the given column position at the current row
        -
        voidupdateByte(java.lang.String columnLabel, - byte value) -
        Updates the byte value of the given column at the current row
        -
        voidupdateDate(int columnIndex, - java.util.Date value) -
        Updates the Date value of the given column position at the current row
        -
        voidupdateDate(java.lang.String columnLabel, - java.util.Date value) -
        Updates the Date value of the given column at the current row
        -
        voidupdateDouble(int columnIndex, - double value) -
        Updates the double value of the given column position at the current row
        -
        voidupdateDouble(java.lang.String columnLabel, - double value) -
        Updates the double value of the given column at the current row
        -
        voidupdateFloat(int columnIndex, - float value) -
        Updates the float value of the given column position at the current row
        -
        voidupdateFloat(java.lang.String columnLabel, - float value) -
        Updates the float value of the given column at the current row
        -
        voidupdateInt(int columnIndex, - int value) -
        Updates the int value of the given column position at the current row
        -
        voidupdateInt(java.lang.String columnLabel, - int value) -
        Updates the int value of the given column at the current row
        -
        voidupdateLong(int columnIndex, - long value) -
        Updates the long value of the given column position at the current row
        -
        voidupdateLong(java.lang.String columnLabel, - long value) -
        Updates the long value of the given column at the current row
        -
        voidupdateObject(int columnIndex, - java.lang.Object obj) -
        Updates the column with an object representation of the value
        -
        voidupdateString(int columnIndex, - java.lang.String value) -
        Updates the String value of the given column position at the current row
        -
        voidupdateString(java.lang.String columnLabel, - java.lang.String value) -
        Updates the String value of the given column at the current row
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        - -
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        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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        Constructor Detail

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          MemoryResultSet

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          public MemoryResultSet()
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        Method Detail

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          getBoolean

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          public boolean getBoolean(int columnIndex)
-                   throws ResultSetException
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          Description copied from interface: ResultSet
          -
          Retrieves the boolean value of the given column position at the current - row
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          -
          Specified by:
          -
          getBoolean in interface ResultSet
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          Overrides:
          -
          getBoolean in class ResultSetImpl
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          Parameters:
          -
          columnIndex - The column starting at position 1
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          Returns:
          -
          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getBoolean

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          public boolean getBoolean(java.lang.String columnLabel)
-                   throws ResultSetException
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          Description copied from interface: ResultSet
          -
          Retrieves the boolean value of the given column at the current row
          -
          -
          Specified by:
          -
          getBoolean in interface ResultSet
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          Overrides:
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          getBoolean in class ResultSetImpl
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          Parameters:
          -
          columnLabel - the name of the column to retrieve
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          Returns:
          -
          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateBoolean

          -
          public void updateBoolean(int columnIndex,
-                          boolean value)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the boolean value of the given column position at the current row
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          -
          Specified by:
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          updateBoolean in interface ResultSet
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          Overrides:
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          updateBoolean in class ResultSetImpl
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          Parameters:
          -
          columnIndex - The column starting at position 1
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateBoolean

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          public void updateBoolean(java.lang.String columnLabel,
-                          boolean value)
-                   throws ResultSetException
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          Description copied from interface: ResultSet
          -
          Updates the boolean value of the given column at the current row
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          -
          Specified by:
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          updateBoolean in interface ResultSet
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          Overrides:
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          updateBoolean in class ResultSetImpl
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          Parameters:
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          columnLabel - the name of the column to set
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getByte

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          public byte getByte(int columnIndex)
-             throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the byte value of the given column position at the current row
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          Specified by:
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          getByte in interface ResultSet
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          Overrides:
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          getByte in class ResultSetImpl
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          Parameters:
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          columnIndex - The column starting at position 1
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          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getByte

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          public byte getByte(java.lang.String columnLabel)
-             throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the byte value of the given column at the current row
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          Specified by:
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          getByte in interface ResultSet
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          Overrides:
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          getByte in class ResultSetImpl
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          Parameters:
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          columnLabel - the name of the column to retrieve
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          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateByte

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          public void updateByte(int columnIndex,
-                       byte value)
-                throws ResultSetException
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          Description copied from interface: ResultSet
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          Updates the byte value of the given column position at the current row
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          -
          Specified by:
          -
          updateByte in interface ResultSet
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          Overrides:
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          updateByte in class ResultSetImpl
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          Parameters:
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          columnIndex - The column starting at position 1
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateByte

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          public void updateByte(java.lang.String columnLabel,
-                       byte value)
-                throws ResultSetException
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          Description copied from interface: ResultSet
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          Updates the byte value of the given column at the current row
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          Specified by:
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          updateByte in interface ResultSet
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          Overrides:
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          updateByte in class ResultSetImpl
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          Parameters:
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          columnLabel - the name of the column to set
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getDate

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          public java.util.Date getDate(int columnIndex)
-                       throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the Date value of the given column position at the current row
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          Specified by:
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          getDate in interface ResultSet
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          Overrides:
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          getDate in class ResultSetImpl
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          Parameters:
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          columnIndex - The column starting at position 1
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          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getDate

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          public java.util.Date getDate(java.lang.String columnLabel)
-                       throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the Date value of the given column at the current row
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          Specified by:
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          getDate in interface ResultSet
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          Overrides:
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          getDate in class ResultSetImpl
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          Parameters:
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          columnLabel - the name of the column to retrieve
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          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateDate

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          public void updateDate(int columnIndex,
-                       java.util.Date value)
-                throws ResultSetException
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          Description copied from interface: ResultSet
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          Updates the Date value of the given column position at the current row
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          -
          Specified by:
          -
          updateDate in interface ResultSet
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          Overrides:
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          updateDate in class ResultSetImpl
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          Parameters:
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          columnIndex - The column starting at position 1
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateDate

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          public void updateDate(java.lang.String columnLabel,
-                       java.util.Date value)
-                throws ResultSetException
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          Description copied from interface: ResultSet
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          Updates the Date value of the given column at the current row
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          Specified by:
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          updateDate in interface ResultSet
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          Overrides:
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          updateDate in class ResultSetImpl
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          Parameters:
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          columnLabel - the name of the column to set
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getDouble

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          public double getDouble(int columnIndex)
-                 throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the double value of the given column position at the current - row
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          Specified by:
          -
          getDouble in interface ResultSet
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          Overrides:
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          getDouble in class ResultSetImpl
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          Parameters:
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          columnIndex - The column starting at position 1
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          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getDouble

          -
          public double getDouble(java.lang.String columnLabel)
-                 throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the double value of the given column at the current row
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          -
          Specified by:
          -
          getDouble in interface ResultSet
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          Overrides:
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          getDouble in class ResultSetImpl
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          Parameters:
          -
          columnLabel - the name of the column to retrieve
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          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateDouble

          -
          public void updateDouble(int columnIndex,
-                         double value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
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          Updates the double value of the given column position at the current row
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          Specified by:
          -
          updateDouble in interface ResultSet
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          Overrides:
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          updateDouble in class ResultSetImpl
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          Parameters:
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          columnIndex - The column starting at position 1
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateDouble

          -
          public void updateDouble(java.lang.String columnLabel,
-                         double value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the double value of the given column at the current row
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          Specified by:
          -
          updateDouble in interface ResultSet
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          Overrides:
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          updateDouble in class ResultSetImpl
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          Parameters:
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          columnLabel - the name of the column to set
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          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getFloat

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          public float getFloat(int columnIndex)
-               throws ResultSetException
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          Description copied from interface: ResultSet
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          Retrieves the float value of the given column position at the current row
          -
          -
          Specified by:
          -
          getFloat in interface ResultSet
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          Overrides:
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          getFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
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          Returns:
          -
          the column value
          -
          Throws:
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          ResultSetException - If a ResultSetException occurs
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          getFloat

          -
          public float getFloat(java.lang.String columnLabel)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
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          Retrieves the float value of the given column at the current row
          -
          -
          Specified by:
          -
          getFloat in interface ResultSet
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          Overrides:
          -
          getFloat in class ResultSetImpl
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          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
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          the column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateFloat

          -
          public void updateFloat(int columnIndex,
-                        float value)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the float value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateFloat in interface ResultSet
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          Overrides:
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          updateFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
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          Throws:
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          ResultSetException - If a ResultSetException occurs
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          updateFloat

          -
          public void updateFloat(java.lang.String columnLabel,
-                        float value)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the float value of the given column at the current row
          -
          -
          Specified by:
          -
          updateFloat in interface ResultSet
          -
          Overrides:
          -
          updateFloat in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
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          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          getInt

          -
          public int getInt(int columnIndex)
-           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the int value of the given column position at the current row
          -
          -
          Specified by:
          -
          getInt in interface ResultSet
          -
          Overrides:
          -
          getInt in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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        • -

          getInt

          -
          public int getInt(java.lang.String columnLabel)
-           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the int value of the given column at the current row
          -
          -
          Specified by:
          -
          getInt in interface ResultSet
          -
          Overrides:
          -
          getInt in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          public void updateInt(int columnIndex,
-                      int value)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the int value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateInt in interface ResultSet
          -
          Overrides:
          -
          updateInt in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          public void updateInt(java.lang.String columnLabel,
-                      int value)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the int value of the given column at the current row
          -
          -
          Specified by:
          -
          updateInt in interface ResultSet
          -
          Overrides:
          -
          updateInt in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          public long getLong(int columnIndex)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the long value of the given column position at the current row
          -
          -
          Specified by:
          -
          getLong in interface ResultSet
          -
          Overrides:
          -
          getLong in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          public long getLong(java.lang.String columnLabel)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the long value of the given column at the current row
          -
          -
          Specified by:
          -
          getLong in interface ResultSet
          -
          Overrides:
          -
          getLong in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          public void updateLong(int columnIndex,
-                       long value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the long value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateLong in interface ResultSet
          -
          Overrides:
          -
          updateLong in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          public void updateLong(java.lang.String columnLabel,
-                       long value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the long value of the given column at the current row
          -
          -
          Specified by:
          -
          updateLong in interface ResultSet
          -
          Overrides:
          -
          updateLong in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          public java.lang.String getString(int columnIndex)
-                           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the String value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getString in interface ResultSet
          -
          Overrides:
          -
          getString in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          public java.lang.String getString(java.lang.String columnLabel)
-                           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the String value of the given column at the current row
          -
          -
          Specified by:
          -
          getString in interface ResultSet
          -
          Overrides:
          -
          getString in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
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        • -

          updateString

          -
          public void updateString(int columnIndex,
-                         java.lang.String value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the String value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateString in interface ResultSet
          -
          Overrides:
          -
          updateString in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          public void updateString(java.lang.String columnLabel,
-                         java.lang.String value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the String value of the given column at the current row
          -
          -
          Specified by:
          -
          updateString in interface ResultSet
          -
          Overrides:
          -
          updateString in class ResultSetImpl
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getObject

          -
          public java.lang.Object getObject(int columnIndex)
-                           throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Returns an object representation of the value at the given column index
          -
          -
          Specified by:
          -
          getObject in interface Joinable
          -
          Overrides:
          -
          getObject in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          Returns:
          -
          The column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateObject

          -
          public void updateObject(int columnIndex,
-                         java.lang.Object obj)
-                  throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Updates the column with an object representation of the value
          -
          -
          Specified by:
          -
          updateObject in interface Joinable
          -
          Overrides:
          -
          updateObject in class ResultSetImpl
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          obj - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Persistable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Persistable.html index a99f6a6..a92ca7d 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Persistable.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Persistable.html @@ -2,9 +2,9 @@ - + Persistable - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Result.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Result.html index ed9aee7..2b7099a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Result.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/Result.html @@ -2,9 +2,9 @@ - + Result - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultDataType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultDataType.html index fa24341..7e3ad06 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultDataType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultDataType.html @@ -2,9 +2,9 @@ - + ResultDataType - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultSet.html deleted file mode 100644 index f5a2162..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultSet.html +++ /dev/null @@ -1,1455 +0,0 @@ - - - - - -ResultSet - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result
    -

    Interface ResultSet

    -
    -
    -
    -
      -
    • -
      -
      All Known Implementing Classes:
      -
      FileResultSet, MemoryResultSet, ResultSetImpl
      -
      -
      -
      -
      public interface ResultSet
      -
      Provides an interface that all result sets are to implement. It is based on - the Java ResultSet classes but provides more customizable features.
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
      -
      • -
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    • - -
        -
      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Abstract Methods 
        Modifier and TypeMethod and Description
        booleanabsolute(long row) -
        Moves the cursor to the given row number in the ResultSet
        -
        voidafterLast() -
        Moves the cursor to the end of the ResultSet, after the last row.
        -
        voidbeforeFirst() -
        Moves the cursor to the beginning of the ResultSet object, before the - first row.
        -
        voidclose() -
        Releases the connection to the datasource
        -
        intfindColumn(java.lang.String columnLabel) -
        Returns the position of the given column in the ResultSet object
        -
        booleanfirst() -
        Moves the cursor to the first row of the ResultSet object.
        -
        booleangetBoolean(int columnIndex) -
        Retrieves the boolean value of the given column position at the current - row
        -
        booleangetBoolean(java.lang.String columnLabel) -
        Retrieves the boolean value of the given column at the current row
        -
        bytegetByte(int columnIndex) -
        Retrieves the byte value of the given column position at the current row
        -
        bytegetByte(java.lang.String columnLabel) -
        Retrieves the byte value of the given column at the current row
        -
        ColumngetColumn(int columnIndex) -
        Gets the column associated with the columnIndex
        -
        Column[]getColumns() -
        Returns an array of columns associated with the result set
        -
        intgetColumnSize() -
        Returns the column size
        -
        java.util.DategetDate(int columnIndex) -
        Retrieves the Date value of the given column position at the current row
        -
        java.util.DategetDate(java.lang.String columnLabel) -
        Retrieves the Date value of the given column at the current row
        -
        doublegetDouble(int columnIndex) -
        Retrieves the double value of the given column position at the current - row
        -
        doublegetDouble(java.lang.String columnLabel) -
        Retrieves the double value of the given column at the current row
        -
        floatgetFloat(int columnIndex) -
        Retrieves the float value of the given column position at the current row
        -
        floatgetFloat(java.lang.String columnLabel) -
        Retrieves the float value of the given column at the current row
        -
        intgetInt(int columnIndex) -
        Retrieves the int value of the given column position at the current row
        -
        intgetInt(java.lang.String columnLabel) -
        Retrieves the int value of the given column at the current row
        -
        longgetLong(int columnIndex) -
        Retrieves the long value of the given column position at the current row
        -
        longgetLong(java.lang.String columnLabel) -
        Retrieves the long value of the given column at the current row
        -
        longgetRow() -
        Returns the current position of the cursor in the ResultSet object
        -
        longgetSize() -
        Returns the size of the ResultSetObject
        -
        java.lang.StringgetString(int columnIndex) -
        Retrieves the String value of the given column position at the current - row
        -
        java.lang.StringgetString(java.lang.String columnLabel) -
        Retrieves the String value of the given column at the current row
        -
        booleanisClosed() -
        Returns the status of the connection to the datasource
        -
        booleanisFirst() -
        Retrieves if the cursor is on the first row in the ResultSet object
        -
        booleanisLast() -
        Retrieves if the cursor is on the last row in the ResultSet object
        -
        booleanlast() -
        Moves the cursor to the last row in the ResultSet object
        -
        booleannext() -
        Moves the cursor to the next row of the ResultSet object
        -
        booleanprevious() -
        Moves the cursor to the previous row in the ResultSet object
        -
        booleanrelative(long rows) -
        Moves the cursor a given number of rows forward
        -
        voidupdateBoolean(int columnIndex, - boolean value) -
        Updates the boolean value of the given column position at the current row
        -
        voidupdateBoolean(java.lang.String columnLabel, - boolean value) -
        Updates the boolean value of the given column at the current row
        -
        voidupdateByte(int columnIndex, - byte value) -
        Updates the byte value of the given column position at the current row
        -
        voidupdateByte(java.lang.String columnLabel, - byte value) -
        Updates the byte value of the given column at the current row
        -
        voidupdateDate(int columnIndex, - java.util.Date value) -
        Updates the Date value of the given column position at the current row
        -
        voidupdateDate(java.lang.String columnLabel, - java.util.Date value) -
        Updates the Date value of the given column at the current row
        -
        voidupdateDouble(int columnIndex, - double value) -
        Updates the double value of the given column position at the current row
        -
        voidupdateDouble(java.lang.String columnLabel, - double value) -
        Updates the double value of the given column at the current row
        -
        voidupdateFloat(int columnIndex, - float value) -
        Updates the float value of the given column position at the current row
        -
        voidupdateFloat(java.lang.String columnLabel, - float value) -
        Updates the float value of the given column at the current row
        -
        voidupdateInt(int columnIndex, - int value) -
        Updates the int value of the given column position at the current row
        -
        voidupdateInt(java.lang.String columnLabel, - int value) -
        Updates the int value of the given column at the current row
        -
        voidupdateLong(int columnIndex, - long value) -
        Updates the long value of the given column position at the current row
        -
        voidupdateLong(java.lang.String columnLabel, - long value) -
        Updates the long value of the given column at the current row
        -
        voidupdateString(int columnIndex, - java.lang.String value) -
        Updates the String value of the given column position at the current row
        -
        voidupdateString(java.lang.String columnLabel, - java.lang.String value) -
        Updates the String value of the given column at the current row
        -
        -
        • -
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    • - -
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      • - - -

        Method Detail

        - - - - - - - -
          -
        • -

          isClosed

          -
          boolean isClosed()
          -
          Returns the status of the connection to the datasource
          -
          -
          Returns:
          -
          true if closed
          -
          -
          • -
        - - - -
          -
        • -

          absolute

          -
          boolean absolute(long row)
-          throws ResultSetException
          -
          Moves the cursor to the given row number in the ResultSet
          -
          -
          Parameters:
          -
          row - The row to move to
          -
          Returns:
          -
          true if the cursor moved successfully, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          afterLast

          -
          void afterLast()
-        throws ResultSetException
          -
          Moves the cursor to the end of the ResultSet, after the last row.
          -
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          beforeFirst

          -
          void beforeFirst()
-          throws ResultSetException
          -
          Moves the cursor to the beginning of the ResultSet object, before the - first row.
          -
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          first

          -
          boolean first()
-       throws ResultSetException
          -
          Moves the cursor to the first row of the ResultSet object.
          -
          -
          Returns:
          -
          true if moved to the first row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
        - - - -
          -
        • -

          next

          -
          boolean next()
-      throws ResultSetException
          -
          Moves the cursor to the next row of the ResultSet object
          -
          -
          Returns:
          -
          true if moved to the next row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
        - - - -
          -
        • -

          relative

          -
          boolean relative(long rows)
-          throws ResultSetException
          -
          Moves the cursor a given number of rows forward
          -
          -
          Parameters:
          -
          rows - The number of rows to move forward
          -
          Returns:
          -
          true if the cursor moved to the new row
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          previous

          -
          boolean previous()
-          throws ResultSetException
          -
          Moves the cursor to the previous row in the ResultSet object
          -
          -
          Returns:
          -
          true if the cursor moved to the previous row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          last

          -
          boolean last()
-      throws ResultSetException
          -
          Moves the cursor to the last row in the ResultSet object
          -
          -
          Returns:
          -
          true if the cursor moved to the new row
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          isFirst

          -
          boolean isFirst()
-         throws ResultSetException
          -
          Retrieves if the cursor is on the first row in the ResultSet object
          -
          -
          Returns:
          -
          true if the cursor is on the first row; false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          isLast

          -
          boolean isLast()
-        throws ResultSetException
          -
          Retrieves if the cursor is on the last row in the ResultSet object
          -
          -
          Returns:
          -
          true if the cursor is on the last row; false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
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        • -

          getRow

          -
          long getRow()
-     throws ResultSetException
          -
          Returns the current position of the cursor in the ResultSet object
          -
          -
          Returns:
          -
          The position of the cursor in the ResultSet object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
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          -
        • -

          getSize

          -
          long getSize()
-      throws ResultSetException
          -
          Returns the size of the ResultSetObject
          -
          -
          Returns:
          -
          The size of the ResultSet object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
        - - - -
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          findColumn

          -
          int findColumn(java.lang.String columnLabel)
-        throws ResultSetException
          -
          Returns the position of the given column in the ResultSet object
          -
          -
          Parameters:
          -
          columnLabel - The name of the column
          -
          Returns:
          -
          The position of the column
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
        - - - -
          -
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          getColumn

          -
          Column getColumn(int columnIndex)
-          throws ResultSetException
          -
          Gets the column associated with the columnIndex
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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          • -
        - - - -
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        • -

          getColumns

          -
          Column[] getColumns()
-             throws ResultSetException
          -
          Returns an array of columns associated with the result set
          -
          -
          Returns:
          -
          Columns
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
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        - - - -
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          getBoolean

          -
          boolean getBoolean(int columnIndex)
-            throws ResultSetException
          -
          Retrieves the boolean value of the given column position at the current - row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getBoolean

          -
          boolean getBoolean(java.lang.String columnLabel)
-            throws ResultSetException
          -
          Retrieves the boolean value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateBoolean

          -
          void updateBoolean(int columnIndex,
-                   boolean value)
-            throws ResultSetException
          -
          Updates the boolean value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateBoolean

          -
          void updateBoolean(java.lang.String columnLabel,
-                   boolean value)
-            throws ResultSetException
          -
          Updates the boolean value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getByte

          -
          byte getByte(int columnIndex)
-      throws ResultSetException
          -
          Retrieves the byte value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getByte

          -
          byte getByte(java.lang.String columnLabel)
-      throws ResultSetException
          -
          Retrieves the byte value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateByte

          -
          void updateByte(int columnIndex,
-                byte value)
-         throws ResultSetException
          -
          Updates the byte value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateByte

          -
          void updateByte(java.lang.String columnLabel,
-                byte value)
-         throws ResultSetException
          -
          Updates the byte value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDate

          -
          java.util.Date getDate(int columnIndex)
-                throws ResultSetException
          -
          Retrieves the Date value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDate

          -
          java.util.Date getDate(java.lang.String columnLabel)
-                throws ResultSetException
          -
          Retrieves the Date value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDate

          -
          void updateDate(int columnIndex,
-                java.util.Date value)
-         throws ResultSetException
          -
          Updates the Date value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDate

          -
          void updateDate(java.lang.String columnLabel,
-                java.util.Date value)
-         throws ResultSetException
          -
          Updates the Date value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDouble

          -
          double getDouble(int columnIndex)
-          throws ResultSetException
          -
          Retrieves the double value of the given column position at the current - row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDouble

          -
          double getDouble(java.lang.String columnLabel)
-          throws ResultSetException
          -
          Retrieves the double value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDouble

          -
          void updateDouble(int columnIndex,
-                  double value)
-           throws ResultSetException
          -
          Updates the double value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDouble

          -
          void updateDouble(java.lang.String columnLabel,
-                  double value)
-           throws ResultSetException
          -
          Updates the double value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getFloat

          -
          float getFloat(int columnIndex)
-        throws ResultSetException
          -
          Retrieves the float value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getFloat

          -
          float getFloat(java.lang.String columnLabel)
-        throws ResultSetException
          -
          Retrieves the float value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateFloat

          -
          void updateFloat(int columnIndex,
-                 float value)
-          throws ResultSetException
          -
          Updates the float value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateFloat

          -
          void updateFloat(java.lang.String columnLabel,
-                 float value)
-          throws ResultSetException
          -
          Updates the float value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getInt

          -
          int getInt(int columnIndex)
-    throws ResultSetException
          -
          Retrieves the int value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getInt

          -
          int getInt(java.lang.String columnLabel)
-    throws ResultSetException
          -
          Retrieves the int value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          void updateInt(int columnIndex,
-               int value)
-        throws ResultSetException
          -
          Updates the int value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          void updateInt(java.lang.String columnLabel,
-               int value)
-        throws ResultSetException
          -
          Updates the int value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          long getLong(int columnIndex)
-      throws ResultSetException
          -
          Retrieves the long value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          long getLong(java.lang.String columnLabel)
-      throws ResultSetException
          -
          Retrieves the long value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          void updateLong(int columnIndex,
-                long value)
-         throws ResultSetException
          -
          Updates the long value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          void updateLong(java.lang.String columnLabel,
-                long value)
-         throws ResultSetException
          -
          Updates the long value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          java.lang.String getString(int columnIndex)
-                    throws ResultSetException
          -
          Retrieves the String value of the given column position at the current - row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          java.lang.String getString(java.lang.String columnLabel)
-                    throws ResultSetException
          -
          Retrieves the String value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          void updateString(int columnIndex,
-                  java.lang.String value)
-           throws ResultSetException
          -
          Updates the String value of the given column position at the current row
          -
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          void updateString(java.lang.String columnLabel,
-                  java.lang.String value)
-           throws ResultSetException
          -
          Updates the String value of the given column at the current row
          -
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getColumnSize

          -
          int getColumnSize()
-           throws ResultSetException
          -
          Returns the column size
          -
          -
          Returns:
          -
          Column size
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result
    -

    Class ResultSetImpl

    -
    -
    -
      -
    • java.lang.Object
      • -
    • -
        -
      • edu.harvard.hms.dbmi.bd2k.irct.model.result.ResultSetImpl
        • -
      -
      • -
    -
    -
      -
    • -
      -
      All Implemented Interfaces:
      -
      Joinable, ResultSet
      -
      -
      -
      Direct Known Subclasses:
      -
      FileResultSet, MemoryResultSet
      -
      -
      -
      -
      public class ResultSetImpl
-extends java.lang.Object
-implements ResultSet, Joinable
      -
      This class provides a base implementation of ResultSets that adds basic - functionality that can then be extended by individual implementations.
      -
      -
      Author:
      -
      Jeremy R. Easton-Marks
      -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Constructor Summary

        - - - - - - - - -
        Constructors 
        Constructor and Description
        ResultSetImpl() 
        -
        • -
      - -
        -
      • - - -

        Method Summary

        - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
        All Methods Instance Methods Concrete Methods 
        Modifier and TypeMethod and Description
        booleanabsolute(long row) -
        Moves the cursor to the given row number in the ResultSet
        -
        voidafterLast() -
        Moves the cursor to the end of the ResultSet, after the last row.
        -
        voidappendColumn(Column column) -
        Adds a new column to a Result Set.
        -
        voidbeforeFirst() -
        Moves the cursor to the beginning of the ResultSet object, before the - first row.
        -
        voidclose() -
        Releases the connection to the datasource
        -
        intfindColumn(java.lang.String columnLabel) -
        Returns the position of the given column in the ResultSet object
        -
        booleanfirst() -
        Moves the cursor to the first row of the ResultSet object.
        -
        booleangetBoolean(int columnIndex) -
        Retrieves the boolean value of the given column position at the current - row
        -
        booleangetBoolean(java.lang.String columnLabel) -
        Retrieves the boolean value of the given column at the current row
        -
        bytegetByte(int columnIndex) -
        Retrieves the byte value of the given column position at the current row
        -
        bytegetByte(java.lang.String columnLabel) -
        Retrieves the byte value of the given column at the current row
        -
        ColumngetColumn(int columnIndex) -
        Gets the column associated with the columnIndex
        -
        Column[]getColumns() -
        Returns an array of columns associated with the result set
        -
        intgetColumnSize() -
        Returns the column size
        -
        java.util.DategetDate(int columnIndex) -
        Retrieves the Date value of the given column position at the current row
        -
        java.util.DategetDate(java.lang.String columnLabel) -
        Retrieves the Date value of the given column at the current row
        -
        doublegetDouble(int columnIndex) -
        Retrieves the double value of the given column position at the current - row
        -
        doublegetDouble(java.lang.String columnLabel) -
        Retrieves the double value of the given column at the current row
        -
        floatgetFloat(int columnIndex) -
        Retrieves the float value of the given column position at the current row
        -
        floatgetFloat(java.lang.String columnLabel) -
        Retrieves the float value of the given column at the current row
        -
        intgetInt(int columnIndex) -
        Retrieves the int value of the given column position at the current row
        -
        intgetInt(java.lang.String columnLabel) -
        Retrieves the int value of the given column at the current row
        -
        longgetLong(int columnIndex) -
        Retrieves the long value of the given column position at the current row
        -
        longgetLong(java.lang.String columnLabel) -
        Retrieves the long value of the given column at the current row
        -
        int[]getMatchColumnIndexes() -
        Gets the indexes of the columns that are to be matched
        -
        java.lang.String[]getMatchColumnNames() -
        Gets the names of the columns that are to be matched
        -
        java.lang.ObjectgetObject(int columnIndex) -
        Returns an object representation of the value at the given column index
        -
        longgetRow() -
        Returns the current position of the cursor in the ResultSet object
        -
        longgetRowPosition() 
        longgetSize() -
        Returns the size of the ResultSetObject
        -
        java.lang.StringgetString(int columnIndex) -
        Retrieves the String value of the given column position at the current - row
        -
        java.lang.StringgetString(java.lang.String columnLabel) -
        Retrieves the String value of the given column at the current row
        -
        booleanisClosed() -
        Returns the status of the connection to the datasource
        -
        booleanisFirst() -
        Retrieves if the cursor is on the first row in the ResultSet object
        -
        booleanisLast() -
        Retrieves if the cursor is on the last row in the ResultSet object
        -
        booleanlast() -
        Moves the cursor to the last row in the ResultSet object
        -
        booleannext() -
        Moves the cursor to the next row of the ResultSet object
        -
        booleanprevious() -
        Moves the cursor to the previous row in the ResultSet object
        -
        booleanrelative(long rows) -
        Moves the cursor a given number of rows forward
        -
        voidsetColumns(Column[] columns) 
        voidsetMatchColumn(int columnIndex) -
        Sets the designated column index to be joined on
        -
        voidsetMatchColumn(int[] columnIndexes) -
        Sets the designated columns by index to be joined on
        -
        voidsetMatchColumn(java.lang.String columnLabel) -
        Sets the designated column label to be joined on
        -
        voidsetMatchColumns(java.lang.String[] columnLabels) -
        Sets the designated columns by label to be joined on
        -
        voidsetRowPosition(long rowPosition) 
        voidunsetMatchColumn(int columnIndex) -
        Unsets the given column as a joining column
        -
        voidunsetMatchColumn(int[] columnIndexes) -
        Unsets the given columns as a joining column
        -
        voidunsetMatchColumn(java.lang.String columnLabel) -
        Unsets the given column as a joining column
        -
        voidunsetMatchColumn(java.lang.String[] columnLabels) -
        Unsets the given columns as a joining column
        -
        voidupdateBoolean(int columnIndex, - boolean value) -
        Updates the boolean value of the given column position at the current row
        -
        voidupdateBoolean(java.lang.String columnLabel, - boolean value) -
        Updates the boolean value of the given column at the current row
        -
        voidupdateByte(int columnIndex, - byte value) -
        Updates the byte value of the given column position at the current row
        -
        voidupdateByte(java.lang.String columnLabel, - byte value) -
        Updates the byte value of the given column at the current row
        -
        voidupdateDate(int columnIndex, - java.util.Date value) -
        Updates the Date value of the given column position at the current row
        -
        voidupdateDate(java.lang.String columnLabel, - java.util.Date value) -
        Updates the Date value of the given column at the current row
        -
        voidupdateDouble(int columnIndex, - double value) -
        Updates the double value of the given column position at the current row
        -
        voidupdateDouble(java.lang.String columnLabel, - double value) -
        Updates the double value of the given column at the current row
        -
        voidupdateFloat(int columnIndex, - float value) -
        Updates the float value of the given column position at the current row
        -
        voidupdateFloat(java.lang.String columnLabel, - float value) -
        Updates the float value of the given column at the current row
        -
        voidupdateInt(int columnIndex, - int value) -
        Updates the int value of the given column position at the current row
        -
        voidupdateInt(java.lang.String columnLabel, - int value) -
        Updates the int value of the given column at the current row
        -
        voidupdateLong(int columnIndex, - long value) -
        Updates the long value of the given column position at the current row
        -
        voidupdateLong(java.lang.String columnLabel, - long value) -
        Updates the long value of the given column at the current row
        -
        voidupdateObject(int columnIndex, - java.lang.Object obj) -
        Updates the column with an object representation of the value
        -
        voidupdateString(int columnIndex, - java.lang.String value) -
        Updates the String value of the given column position at the current row
        -
        voidupdateString(java.lang.String columnLabel, - java.lang.String value) -
        Updates the String value of the given column at the current row
        -
        -
          -
        • - - -

          Methods inherited from class java.lang.Object

          -equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
          • -
        -
        • -
      -
      • -
    -
    -
    -
      -
    • - -
        -
      • - - -

        Constructor Detail

        - - - -
          -
        • -

          ResultSetImpl

          -
          public ResultSetImpl()
          -
          • -
        -
        • -
      - -
        -
      • - - -

        Method Detail

        - - - -
          -
        • -

          appendColumn

          -
          public void appendColumn(Column column)
-                  throws ResultSetException
          -
          Adds a new column to a Result Set. The Result set must be empty for this - to be performed.
          -
          -
          Parameters:
          -
          column - New Column
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getMatchColumnIndexes

          -
          public int[] getMatchColumnIndexes()
-                            throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Gets the indexes of the columns that are to be matched
          -
          -
          Specified by:
          -
          getMatchColumnIndexes in interface Joinable
          -
          Returns:
          -
          an int array of column indexes that are set as matched columns
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getMatchColumnNames

          -
          public java.lang.String[] getMatchColumnNames()
-                                       throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Gets the names of the columns that are to be matched
          -
          -
          Specified by:
          -
          getMatchColumnNames in interface Joinable
          -
          Returns:
          -
          a string array of column indexes that are set as matched columns
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumn

          -
          public void setMatchColumn(int columnIndex)
-                    throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Sets the designated column index to be joined on
          -
          -
          Specified by:
          -
          setMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnIndex - the column index to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumn

          -
          public void setMatchColumn(int[] columnIndexes)
-                    throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Sets the designated columns by index to be joined on
          -
          -
          Specified by:
          -
          setMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnIndexes - the column indexes to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumn

          -
          public void setMatchColumn(java.lang.String columnLabel)
-                    throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Sets the designated column label to be joined on
          -
          -
          Specified by:
          -
          setMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnLabel - the column index to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          setMatchColumns

          -
          public void setMatchColumns(java.lang.String[] columnLabels)
-                     throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Sets the designated columns by label to be joined on
          -
          -
          Specified by:
          -
          setMatchColumns in interface Joinable
          -
          Parameters:
          -
          columnLabels - the column labels to join on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          unsetMatchColumn

          -
          public void unsetMatchColumn(int columnIndex)
-                      throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Unsets the given column as a joining column
          -
          -
          Specified by:
          -
          unsetMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnIndex - the index of the column to no longer match on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          unsetMatchColumn

          -
          public void unsetMatchColumn(int[] columnIndexes)
-                      throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Unsets the given columns as a joining column
          -
          -
          Specified by:
          -
          unsetMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnIndexes - the indexes of the column to no longer match on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          unsetMatchColumn

          -
          public void unsetMatchColumn(java.lang.String columnLabel)
-                      throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Unsets the given column as a joining column
          -
          -
          Specified by:
          -
          unsetMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnLabel - the label of the column to no longer match on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          unsetMatchColumn

          -
          public void unsetMatchColumn(java.lang.String[] columnLabels)
-                      throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Unsets the given columns as a joining column
          -
          -
          Specified by:
          -
          unsetMatchColumn in interface Joinable
          -
          Parameters:
          -
          columnLabels - the index of the column to no longer match on
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - - - - - -
          -
        • -

          isClosed

          -
          public boolean isClosed()
          -
          Description copied from interface: ResultSet
          -
          Returns the status of the connection to the datasource
          -
          -
          Specified by:
          -
          isClosed in interface ResultSet
          -
          Returns:
          -
          true if closed
          -
          -
          • -
        - - - -
          -
        • -

          absolute

          -
          public boolean absolute(long row)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the given row number in the ResultSet
          -
          -
          Specified by:
          -
          absolute in interface ResultSet
          -
          Parameters:
          -
          row - The row to move to
          -
          Returns:
          -
          true if the cursor moved successfully, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - - - - - -
          -
        • -

          beforeFirst

          -
          public void beforeFirst()
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the beginning of the ResultSet object, before the - first row.
          -
          -
          Specified by:
          -
          beforeFirst in interface ResultSet
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          first

          -
          public boolean first()
-              throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the first row of the ResultSet object.
          -
          -
          Specified by:
          -
          first in interface ResultSet
          -
          Returns:
          -
          true if moved to the first row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          next

          -
          public boolean next()
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the next row of the ResultSet object
          -
          -
          Specified by:
          -
          next in interface ResultSet
          -
          Returns:
          -
          true if moved to the next row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          relative

          -
          public boolean relative(long rows)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor a given number of rows forward
          -
          -
          Specified by:
          -
          relative in interface ResultSet
          -
          Parameters:
          -
          rows - The number of rows to move forward
          -
          Returns:
          -
          true if the cursor moved to the new row
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          previous

          -
          public boolean previous()
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the previous row in the ResultSet object
          -
          -
          Specified by:
          -
          previous in interface ResultSet
          -
          Returns:
          -
          true if the cursor moved to the previous row, false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          last

          -
          public boolean last()
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Moves the cursor to the last row in the ResultSet object
          -
          -
          Specified by:
          -
          last in interface ResultSet
          -
          Returns:
          -
          true if the cursor moved to the new row
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          isFirst

          -
          public boolean isFirst()
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves if the cursor is on the first row in the ResultSet object
          -
          -
          Specified by:
          -
          isFirst in interface ResultSet
          -
          Returns:
          -
          true if the cursor is on the first row; false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          isLast

          -
          public boolean isLast()
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves if the cursor is on the last row in the ResultSet object
          -
          -
          Specified by:
          -
          isLast in interface ResultSet
          -
          Returns:
          -
          true if the cursor is on the last row; false otherwise
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getRow

          -
          public long getRow()
-            throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Returns the current position of the cursor in the ResultSet object
          -
          -
          Specified by:
          -
          getRow in interface ResultSet
          -
          Returns:
          -
          The position of the cursor in the ResultSet object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getSize

          -
          public long getSize()
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Returns the size of the ResultSetObject
          -
          -
          Specified by:
          -
          getSize in interface ResultSet
          -
          Returns:
          -
          The size of the ResultSet object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - - - - - -
          -
        • -

          findColumn

          -
          public int findColumn(java.lang.String columnLabel)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Returns the position of the given column in the ResultSet object
          -
          -
          Specified by:
          -
          findColumn in interface ResultSet
          -
          Parameters:
          -
          columnLabel - The name of the column
          -
          Returns:
          -
          The position of the column
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getColumn

          -
          public Column getColumn(int columnIndex)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Gets the column associated with the columnIndex
          -
          -
          Specified by:
          -
          getColumn in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column object
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - - - - - - - - - -
          -
        • -

          getBoolean

          -
          public boolean getBoolean(int columnIndex)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the boolean value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getBoolean in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getBoolean

          -
          public boolean getBoolean(java.lang.String columnLabel)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the boolean value of the given column at the current row
          -
          -
          Specified by:
          -
          getBoolean in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateBoolean

          -
          public void updateBoolean(int columnIndex,
-                          boolean value)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the boolean value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateBoolean in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateBoolean

          -
          public void updateBoolean(java.lang.String columnLabel,
-                          boolean value)
-                   throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the boolean value of the given column at the current row
          -
          -
          Specified by:
          -
          updateBoolean in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getByte

          -
          public byte getByte(int columnIndex)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the byte value of the given column position at the current row
          -
          -
          Specified by:
          -
          getByte in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getByte

          -
          public byte getByte(java.lang.String columnLabel)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the byte value of the given column at the current row
          -
          -
          Specified by:
          -
          getByte in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateByte

          -
          public void updateByte(int columnIndex,
-                       byte value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the byte value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateByte in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateByte

          -
          public void updateByte(java.lang.String columnLabel,
-                       byte value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the byte value of the given column at the current row
          -
          -
          Specified by:
          -
          updateByte in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDate

          -
          public java.util.Date getDate(int columnIndex)
-                       throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the Date value of the given column position at the current row
          -
          -
          Specified by:
          -
          getDate in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDate

          -
          public java.util.Date getDate(java.lang.String columnLabel)
-                       throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the Date value of the given column at the current row
          -
          -
          Specified by:
          -
          getDate in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDate

          -
          public void updateDate(int columnIndex,
-                       java.util.Date value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the Date value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateDate in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDate

          -
          public void updateDate(java.lang.String columnLabel,
-                       java.util.Date value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the Date value of the given column at the current row
          -
          -
          Specified by:
          -
          updateDate in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDouble

          -
          public double getDouble(int columnIndex)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the double value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getDouble in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getDouble

          -
          public double getDouble(java.lang.String columnLabel)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the double value of the given column at the current row
          -
          -
          Specified by:
          -
          getDouble in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDouble

          -
          public void updateDouble(int columnIndex,
-                         double value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the double value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateDouble in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateDouble

          -
          public void updateDouble(java.lang.String columnLabel,
-                         double value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the double value of the given column at the current row
          -
          -
          Specified by:
          -
          updateDouble in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getFloat

          -
          public float getFloat(int columnIndex)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the float value of the given column position at the current row
          -
          -
          Specified by:
          -
          getFloat in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getFloat

          -
          public float getFloat(java.lang.String columnLabel)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the float value of the given column at the current row
          -
          -
          Specified by:
          -
          getFloat in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateFloat

          -
          public void updateFloat(int columnIndex,
-                        float value)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the float value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateFloat in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateFloat

          -
          public void updateFloat(java.lang.String columnLabel,
-                        float value)
-                 throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the float value of the given column at the current row
          -
          -
          Specified by:
          -
          updateFloat in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
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          -
        • -

          getInt

          -
          public int getInt(int columnIndex)
-           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the int value of the given column position at the current row
          -
          -
          Specified by:
          -
          getInt in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getInt

          -
          public int getInt(java.lang.String columnLabel)
-           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the int value of the given column at the current row
          -
          -
          Specified by:
          -
          getInt in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          public void updateInt(int columnIndex,
-                      int value)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the int value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateInt in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateInt

          -
          public void updateInt(java.lang.String columnLabel,
-                      int value)
-               throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the int value of the given column at the current row
          -
          -
          Specified by:
          -
          updateInt in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          public long getLong(int columnIndex)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the long value of the given column position at the current row
          -
          -
          Specified by:
          -
          getLong in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getLong

          -
          public long getLong(java.lang.String columnLabel)
-             throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the long value of the given column at the current row
          -
          -
          Specified by:
          -
          getLong in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          public void updateLong(int columnIndex,
-                       long value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the long value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateLong in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateLong

          -
          public void updateLong(java.lang.String columnLabel,
-                       long value)
-                throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the long value of the given column at the current row
          -
          -
          Specified by:
          -
          updateLong in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          public java.lang.String getString(int columnIndex)
-                           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the String value of the given column position at the current - row
          -
          -
          Specified by:
          -
          getString in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getString

          -
          public java.lang.String getString(java.lang.String columnLabel)
-                           throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Retrieves the String value of the given column at the current row
          -
          -
          Specified by:
          -
          getString in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to retrieve
          -
          Returns:
          -
          the column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          public void updateString(int columnIndex,
-                         java.lang.String value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the String value of the given column position at the current row
          -
          -
          Specified by:
          -
          updateString in interface ResultSet
          -
          Parameters:
          -
          columnIndex - The column starting at position 1
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateString

          -
          public void updateString(java.lang.String columnLabel,
-                         java.lang.String value)
-                  throws ResultSetException
          -
          Description copied from interface: ResultSet
          -
          Updates the String value of the given column at the current row
          -
          -
          Specified by:
          -
          updateString in interface ResultSet
          -
          Parameters:
          -
          columnLabel - the name of the column to set
          -
          value - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getObject

          -
          public java.lang.Object getObject(int columnIndex)
-                           throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Returns an object representation of the value at the given column index
          -
          -
          Specified by:
          -
          getObject in interface Joinable
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          Returns:
          -
          The column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          updateObject

          -
          public void updateObject(int columnIndex,
-                         java.lang.Object obj)
-                  throws ResultSetException
          -
          Description copied from interface: Joinable
          -
          Updates the column with an object representation of the value
          -
          -
          Specified by:
          -
          updateObject in interface Joinable
          -
          Parameters:
          -
          columnIndex - The column starting at position 0
          -
          obj - The new column value
          -
          Throws:
          -
          ResultSetException - If a ResultSetException occurs
          -
          -
          • -
        - - - -
          -
        • -

          getRowPosition

          -
          public long getRowPosition()
          -
          • -
        - - - -
          -
        • -

          setRowPosition

          -
          public void setRowPosition(long rowPosition)
          -
          • -
        -
        • -
      -
      • -
    -
    -
    - - -
    - - -
    Skip navigation links
    - - - - -
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    • Summary: 
      • -
    • Nested | 
      • -
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      • -
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      • -
    • Method
      • -
    - -
    - - -
    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultStatus.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultStatus.html index 23ad33d..990c396 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultStatus.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/ResultStatus.html @@ -2,9 +2,9 @@ - + ResultStatus - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Column.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Column.html deleted file mode 100644 index af6e31d..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Column.html +++ /dev/null @@ -1,199 +0,0 @@ - - - - - -Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.Column - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result.Column

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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Data.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Data.html index 8687342..4c45792 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Data.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Data.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.result.Data - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/DataConverterImplementation.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/DataConverterImplementation.html index 5464489..21eea58 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/DataConverterImplementation.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/DataConverterImplementation.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.DataConverterImplementation - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Joinable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Joinable.html deleted file mode 100644 index 50adf11..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Joinable.html +++ /dev/null @@ -1,219 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.result.Joinable - - - - - - - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result.Joinable

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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Persistable.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Persistable.html index 85e61d1..e2dac40 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Persistable.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Persistable.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.result.Persistable - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Result.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Result.html index a28ab84..d949ed5 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Result.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/Result.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.Result - + @@ -95,6 +95,14 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.result +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -247,25 +255,69 @@

    Uses of javax.ws.rs.core.StreamingOutput -XSLXTabularDataConverter.createStream(Result result)  +ResultDataConverter.createStream(Result result) +
    Returns an output stream
    + + + + + +
  • + + +

    Uses of Result in edu.harvard.hms.dbmi.bd2k.irct.event

    + + + + + + + + + + - - + + - - + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type Result 
    Modifier and TypeMethod and Description
    voidIRCTEventListener.afterGetResult(Result result) +
    Runs the event listeners after a result is retrieved
    +
    javax.ws.rs.core.StreamingOutputXMLTabularDataConverter.createStream(Result result) voidIRCTEventListener.afterSaveResult(Result result) +
    Runs the event listers after a result is saved
    +
    javax.ws.rs.core.StreamingOutputResultDataConverter.createStream(Result result) -
    Returns an output stream
    +    		voidIRCTEventListener.beforeSaveResult(Result result) +
    Runs the event listers before a result is saved
    +
    • +
  • + + +

    Uses of Result in edu.harvard.hms.dbmi.bd2k.irct.event.result

    + + + + + + + + + + + - - + + - - + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.result with parameters of type Result 
    Modifier and TypeMethod and Description
    voidBeforeSaveResult.fire(Result result) 
    javax.ws.rs.core.StreamingOutputJSONTabularDataConverter.createStream(Result result) voidAfterSaveResult.fire(Result result) 
    javax.ws.rs.core.StreamingOutputCSVTabularDataConverter.createStream(Result result) voidAfterGetResult.fire(Result result) +
    An action that is run after a result is retrieved
    +
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultDataType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultDataType.html index 6801bd1..c86493e 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultDataType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultDataType.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.ResultDataType - + @@ -191,26 +191,10 @@

    Uses of ResultDataType -XSLXTabularDataConverter.getResultDataType()  - - -ResultDataType -XMLTabularDataConverter.getResultDataType()  - - -ResultDataType ResultDataConverter.getResultDataType()
    Returns the data type the data converter supports
    - -ResultDataType -JSONTabularDataConverter.getResultDataType()  - - -ResultDataType -CSVTabularDataConverter.getResultDataType()  -

    • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultSet.html deleted file mode 100644 index db3f40d..0000000 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultSet.html +++ /dev/null @@ -1,537 +0,0 @@ - - - - - -Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.result.ResultSet - - - - - - - - -
    - - -
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    edu.harvard.hms.dbmi.bd2k.irct.model.result.ResultSet

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    - - - diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultStatus.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultStatus.html index dce5fd6..4d8f7b2 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultStatus.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/class-use/ResultStatus.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.ResultStatus - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/PersistableException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/PersistableException.html index 4f95347..4d67ae9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/PersistableException.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/PersistableException.html @@ -2,9 +2,9 @@ - + PersistableException - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/ResultSetException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/ResultSetException.html index cde0242..5a1e8e4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/ResultSetException.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/ResultSetException.html @@ -2,9 +2,9 @@ - + ResultSetException - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/RowSetExeception.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/RowSetExeception.html index 2ce6c8b..4380842 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/RowSetExeception.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/RowSetExeception.html @@ -2,9 +2,9 @@ - + RowSetExeception - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/PersistableException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/PersistableException.html index e5002d6..6252bbc 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/PersistableException.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/PersistableException.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.exception.PersistableException - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/ResultSetException.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/ResultSetException.html index e8e0426..9c720d7 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/ResultSetException.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/ResultSetException.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.exception.ResultSetException - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/RowSetExeception.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/RowSetExeception.html index 48a58ff..8be7095 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/RowSetExeception.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/class-use/RowSetExeception.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.exception.RowSetExeception - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-frame.html index c0e8689..4227c9a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.exception - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-summary.html index c621072..fbfd8d9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.exception - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-tree.html index fef12d1..f941315 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.exception Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-use.html index 67a5463..82d86f4 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/exception/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.result.exception - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JSONResultImpl.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JSONResultImpl.html index e64ecca..b59daf5 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JSONResultImpl.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JSONResultImpl.html @@ -2,9 +2,9 @@ - + JSONResultImpl - + @@ -160,6 +160,13 @@

    Method Summary

    +
      +
    • + + +

      Methods inherited from interface edu.harvard.hms.dbmi.bd2k.irct.model.result.Data

      +getFileList
      • +
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JsonFileResult.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JsonFileResult.html index 7b48592..a6d3c4b 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JsonFileResult.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/JsonFileResult.html @@ -2,9 +2,9 @@ - + JsonFileResult - + @@ -18,7 +18,7 @@ catch(err) { } //--> -var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10}; +var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10}; var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; var altColor = "altColor"; var rowColor = "rowColor"; @@ -165,66 +165,70 @@

    Method Summary

    +java.util.List<java.io.File> +getFileList()  + + boolean isAvailable(java.lang.String location)
    Returns if the result set can be loaded.
    - + boolean isClosed()
    Is the json result implementation closed
    - + boolean isCurrent()
    Returns if the current result set has been persisted.
    - + boolean isPersisted()
    Returns true if the Result Set has been persisted
    - + void load(java.lang.String location)
    Load the Result Set from the location specified
    - + void merge()
    Updates the current persisted state with any changes
    - + void persist()
    Persists the result set to the long term storage
    - + void persist(java.lang.String location)
    Persists the result set to the long term storage
    - + void refresh()
    Refreshes the result set with the persisted state.
    - + void setArray(javax.json.JsonArray jsonArray)
    Sets the json array to save
    - + void setObject(javax.json.JsonObject jsonObject)
    Set the json object to save
    @@ -475,7 +479,7 @@

    setArray

    -
      +

      • isClosed

        public boolean isClosed()
        @@ -489,6 +493,19 @@

        isClosed

      + + + +
        +
      • +

        getFileList

        +
        public java.util.List<java.io.File> getFileList()
        +
        +
        Specified by:
        +
        getFileList in interface Data
        +
        +
        • +
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JSONResultImpl.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JSONResultImpl.html index f1245f9..460471b 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JSONResultImpl.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JSONResultImpl.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.result.json.JSONResultImpl - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JsonFileResult.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JsonFileResult.html index 3fa18e7..0b33c46 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JsonFileResult.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/class-use/JsonFileResult.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.json.JsonFileResult - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-frame.html index 1f48916..744d8e3 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.json - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-summary.html index 391d9c6..e2c8b47 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.json - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-tree.html index d99edec..c62e0f0 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.json Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-use.html index c8a1cc4..4979b99 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/json/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.result.json - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-frame.html index 51318f8..0d7a2db 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-summary.html index 577beb2..633a23a 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-tree.html index 5b0c28c..d41d123 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-use.html index 0c5ec2b..f7f90df 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.result - + @@ -99,6 +99,14 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.result +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -215,6 +223,42 @@

    + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.result used by edu.harvard.hms.dbmi.bd2k.irct.event 
    Class and Description
    Result +
    The result class is created for each execution that is run on the IRCT + (Query, Process, etc...).
    +
    + +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.result used by edu.harvard.hms.dbmi.bd2k.irct.event.result 
    Class and Description
    Result +
    The result class is created for each execution that is run on the IRCT + (Query, Process, etc...).
    +
    +
  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Column.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Column.html index 4297899..c4e0c28 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Column.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Column.html @@ -2,9 +2,9 @@ - + Column - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/FileResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/FileResultSet.html index a31e3f7..7d5632f 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/FileResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/FileResultSet.html @@ -2,9 +2,9 @@ - + FileResultSet - + @@ -18,7 +18,7 @@ catch(err) { } //--> -var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10,"i19":10,"i20":10,"i21":10,"i22":10,"i23":10,"i24":10,"i25":10,"i26":10,"i27":10,"i28":10,"i29":10,"i30":10,"i31":10,"i32":10,"i33":10,"i34":10,"i35":10,"i36":10,"i37":10,"i38":10,"i39":10,"i40":10,"i41":10,"i42":10,"i43":10,"i44":10,"i45":10,"i46":10,"i47":10,"i48":10,"i49":10,"i50":10,"i51":10,"i52":10,"i53":10,"i54":10}; +var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10,"i19":10,"i20":10,"i21":10,"i22":10,"i23":10,"i24":10,"i25":10,"i26":10,"i27":10,"i28":10,"i29":10,"i30":10,"i31":10,"i32":10,"i33":10,"i34":10,"i35":10,"i36":10,"i37":10,"i38":10,"i39":10,"i40":10,"i41":10,"i42":10,"i43":10,"i44":10,"i45":10,"i46":10,"i47":10,"i48":10,"i49":10,"i50":10,"i51":10,"i52":10,"i53":10,"i54":10,"i55":10}; var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; var altColor = "altColor"; var rowColor = "rowColor"; @@ -243,269 +243,273 @@

    Method Summary

    +java.util.List<java.io.File> +getFileList()  + + float getFloat(int columnIndex)
    Retrieves the float value of the given column position at the current row
    - + float getFloat(java.lang.String columnLabel)
    Retrieves the float value of the given column at the current row
    - + int getInt(int columnIndex)
    Retrieves the int value of the given column position at the current row
    - + int getInt(java.lang.String columnLabel)
    Retrieves the int value of the given column at the current row
    - + long getLong(int columnIndex)
    Retrieves the long value of the given column position at the current row
    - + long getLong(java.lang.String columnLabel)
    Retrieves the long value of the given column at the current row
    - + java.lang.Object getObject(int columnIndex)
    Get an object from a column from the current row
    - + long getRow()
    Returns the current position of the cursor in the ResultSet object
    - + long getSize()
    Returns the size of the ResultSetObject
    - + java.lang.String getString(int columnIndex)
    Retrieves the String value of the given column position at the current row
    - + java.lang.String getString(java.lang.String columnLabel)
    Retrieves the String value of the given column at the current row
    - + boolean isAvailable(java.lang.String location)
    Returns if the result set can be loaded.
    - + boolean isCurrent()
    Returns if the current result set has been persisted.
    - + boolean isPersisted()
    Returns true if the Result Set has been persisted
    - + boolean last()
    Moves the cursor to the last row in the ResultSet object
    - + void load(java.lang.String fileName)
    Load the Result Set from the location specified
    - + void merge()
    Updates the current persisted state with any changes
    - + boolean next()
    Moves the cursor to the next row of the ResultSet object
    - + void persist()
    Persists the result set to the long term storage
    - + void persist(java.lang.String fileName)
    Persists the result set to the long term storage
    - + boolean previous()
    Moves the cursor to the previous row in the ResultSet object
    - + void refresh()
    Refreshes the result set with the persisted state.
    - + boolean relative(long rows)
    Moves the cursor a given number of rows forward
    - + javax.json.JsonObject toJson()
    Returns a JSONObject representation of the object.
    - + javax.json.JsonObject toJson(int depth)
    Returns a JSONObject representation of the object.
    - + void updateBoolean(int columnIndex, boolean value)
    Updates the boolean value of the given column position at the current row
    - + void updateBoolean(java.lang.String columnLabel, boolean value)
    Updates the boolean value of the given column at the current row
    - + void updateByte(int columnIndex, byte value)
    Updates the byte value of the given column position at the current row
    - + void updateByte(java.lang.String columnLabel, byte value)
    Updates the byte value of the given column at the current row
    - + void updateDate(int columnIndex, java.util.Date value)
    Updates the Date value of the given column position at the current row
    - + void updateDate(java.lang.String columnLabel, java.util.Date value)
    Updates the Date value of the given column at the current row
    - + void updateDouble(int columnIndex, double value)
    Updates the double value of the given column position at the current row
    - + void updateDouble(java.lang.String columnLabel, double value)
    Updates the double value of the given column at the current row
    - + void updateFloat(int columnIndex, float value)
    Updates the float value of the given column position at the current row
    - + void updateFloat(java.lang.String columnLabel, float value)
    Updates the float value of the given column at the current row
    - + void updateInt(int columnIndex, int value)
    Updates the int value of the given column position at the current row
    - + void updateInt(java.lang.String columnLabel, int value)
    Updates the int value of the given column at the current row
    - + void updateLong(int columnIndex, long value)
    Updates the long value of the given column position at the current row
    - + void updateLong(java.lang.String columnLabel, long value)
    Updates the long value of the given column at the current row
    - + void updateObject(int columnIndex, java.lang.Object obj)
    Updates an object from a column from the current row
    - + void updateString(int columnIndex, java.lang.String value)
    Updates the String value of the given column position at the current row
    - + void updateString(java.lang.String columnLabel, java.lang.String value) @@ -920,6 +924,21 @@

    refresh

    • + + + + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/MemoryResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/MemoryResultSet.html index 4b1533c..83e71be 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/MemoryResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/MemoryResultSet.html @@ -2,9 +2,9 @@ - + MemoryResultSet - + @@ -403,7 +403,7 @@

    Method Summary

    Methods inherited from class edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.ResultSetImpl

    -absolute, afterLast, appendColumn, beforeFirst, close, findColumn, first, getColumn, getColumns, getColumnSize, getRow, getRowPosition, isClosed, isFirst, isLast, last, load, next, previous, relative, setRowPosition +absolute, afterLast, appendColumn, beforeFirst, close, findColumn, first, getColumn, getColumns, getColumnSize, getFileList, getRow, getRowPosition, isClosed, isFirst, isLast, last, load, next, previous, relative, setRowPosition diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/ResultSetImpl.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/ResultSetImpl.html index 19401ea..cd60c32 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/ResultSetImpl.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/ResultSetImpl.html @@ -2,9 +2,9 @@ - + ResultSetImpl - + @@ -18,7 +18,7 @@ catch(err) { } //--> -var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10,"i19":10,"i20":10,"i21":10,"i22":10,"i23":10,"i24":10,"i25":10,"i26":10,"i27":10,"i28":10,"i29":10,"i30":10,"i31":10,"i32":10,"i33":10,"i34":10,"i35":10,"i36":10,"i37":10,"i38":10,"i39":10,"i40":10,"i41":10,"i42":10,"i43":10,"i44":10,"i45":10,"i46":10,"i47":10,"i48":10,"i49":10,"i50":10,"i51":10,"i52":10,"i53":10,"i54":10,"i55":10,"i56":10}; +var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10,"i19":10,"i20":10,"i21":10,"i22":10,"i23":10,"i24":10,"i25":10,"i26":10,"i27":10,"i28":10,"i29":10,"i30":10,"i31":10,"i32":10,"i33":10,"i34":10,"i35":10,"i36":10,"i37":10,"i38":10,"i39":10,"i40":10,"i41":10,"i42":10,"i43":10,"i44":10,"i45":10,"i46":10,"i47":10,"i48":10,"i49":10,"i50":10,"i51":10,"i52":10,"i53":10,"i54":10,"i55":10,"i56":10,"i57":10}; var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; var altColor = "altColor"; var rowColor = "rowColor"; @@ -279,243 +279,247 @@

    Method Summary

    +java.util.List<java.io.File> +getFileList()  + + float getFloat(int columnIndex)
    Retrieves the float value of the given column position at the current row
    - + float getFloat(java.lang.String columnLabel)
    Retrieves the float value of the given column at the current row
    - + int getInt(int columnIndex)
    Retrieves the int value of the given column position at the current row
    - + int getInt(java.lang.String columnLabel)
    Retrieves the int value of the given column at the current row
    - + long getLong(int columnIndex)
    Retrieves the long value of the given column position at the current row
    - + long getLong(java.lang.String columnLabel)
    Retrieves the long value of the given column at the current row
    - + java.lang.Object getObject(int columnIndex)
    Get an object from a column from the current row
    - + long getRow()
    Returns the current position of the cursor in the ResultSet object
    - + long getRowPosition()
    Gets the current row position
    - + long getSize()
    Returns the size of the ResultSetObject
    - + java.lang.String getString(int columnIndex)
    Retrieves the String value of the given column position at the current row
    - + java.lang.String getString(java.lang.String columnLabel)
    Retrieves the String value of the given column at the current row
    - + boolean isClosed()
    Returns the status of the connection to the datasource
    - + boolean isFirst()
    Retrieves if the cursor is on the first row in the ResultSet object
    - + boolean isLast()
    Retrieves if the cursor is on the last row in the ResultSet object
    - + boolean last()
    Moves the cursor to the last row in the ResultSet object
    - + void load(java.lang.String resultSetLocation)  - + boolean next()
    Moves the cursor to the next row of the ResultSet object
    - + boolean previous()
    Moves the cursor to the previous row in the ResultSet object
    - + boolean relative(long rows)
    Moves the cursor a given number of rows forward
    - + void setRowPosition(long rowPosition)
    Sets the current row position
    - + void updateBoolean(int columnIndex, boolean value)
    Updates the boolean value of the given column position at the current row
    - + void updateBoolean(java.lang.String columnLabel, boolean value)
    Updates the boolean value of the given column at the current row
    - + void updateByte(int columnIndex, byte value)
    Updates the byte value of the given column position at the current row
    - + void updateByte(java.lang.String columnLabel, byte value)
    Updates the byte value of the given column at the current row
    - + void updateDate(int columnIndex, java.util.Date value)
    Updates the Date value of the given column position at the current row
    - + void updateDate(java.lang.String columnLabel, java.util.Date value)
    Updates the Date value of the given column at the current row
    - + void updateDouble(int columnIndex, double value)
    Updates the double value of the given column position at the current row
    - + void updateDouble(java.lang.String columnLabel, double value)
    Updates the double value of the given column at the current row
    - + void updateFloat(int columnIndex, float value)
    Updates the float value of the given column position at the current row
    - + void updateFloat(java.lang.String columnLabel, float value)
    Updates the float value of the given column at the current row
    - + void updateInt(int columnIndex, int value)
    Updates the int value of the given column position at the current row
    - + void updateInt(java.lang.String columnLabel, int value)
    Updates the int value of the given column at the current row
    - + void updateLong(int columnIndex, long value)
    Updates the long value of the given column position at the current row
    - + void updateLong(java.lang.String columnLabel, long value)
    Updates the long value of the given column at the current row
    - + void updateObject(int columnIndex, java.lang.Object obj)
    Updates an object from a column from the current row
    - + void updateString(int columnIndex, java.lang.String value)
    Updates the String value of the given column position at the current row
    - + void updateString(java.lang.String columnLabel, java.lang.String value) @@ -600,6 +604,19 @@

    load

    + + + +
      +
    • +

      getFileList

      +
      public java.util.List<java.io.File> getFileList()
      +
      +
      Specified by:
      +
      getFileList in interface Data
      +
      +
      • +
    diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Row.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Row.html index f0d4cd2..5050f8b 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Row.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/Row.html @@ -2,9 +2,9 @@ - + Row - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Column.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Column.html index e852e10..ae5c349 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Column.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Column.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.Column - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/FileResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/FileResultSet.html index 8e10a1e..dedc211 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/FileResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/FileResultSet.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.FileResultSet - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/MemoryResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/MemoryResultSet.html index 031dd80..26fab2d 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/MemoryResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/MemoryResultSet.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.MemoryResultSet - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSet.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSet.html index 5c04f7b..4394114 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSet.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSet.html @@ -2,9 +2,9 @@ - + Uses of Interface edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.ResultSet - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSetImpl.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSetImpl.html index b0e1490..88f3810 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSetImpl.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/ResultSetImpl.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.ResultSetImpl - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Row.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Row.html index d03793c..e0ecb82 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Row.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/class-use/Row.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular.Row - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-frame.html index c4e00ed..2c6cd44 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-summary.html index 7c4d826..f1e50fd 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-tree.html index b1f41ca..9dc30df 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-use.html index 3b0c2b7..8e338ff 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/result/tabular/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.result.tabular - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/JWT.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/JWT.html index ce693ff..d475e45 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/JWT.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/JWT.html @@ -2,9 +2,9 @@ - + JWT - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/SecureSession.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/SecureSession.html index 97517d2..8000e70 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/SecureSession.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/SecureSession.html @@ -2,9 +2,9 @@ - + SecureSession - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/Token.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/Token.html index b17ca03..f26b8b9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/Token.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/Token.html @@ -2,9 +2,9 @@ - + Token - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/User.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/User.html index b7e414b..4e4d8c2 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/User.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/User.html @@ -2,9 +2,9 @@ - + User - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/JWT.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/JWT.html index 2750ea0..d6af9d6 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/JWT.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/JWT.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.security.JWT - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/SecureSession.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/SecureSession.html index b509d30..169eef1 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/SecureSession.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/SecureSession.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.security.SecureSession - + @@ -91,14 +91,26 @@

      -edu.harvard.hms.dbmi.bd2k.irct.executable +edu.harvard.hms.dbmi.bd2k.irct.event   -edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.find +  + + +edu.harvard.hms.dbmi.bd2k.irct.executable   +edu.harvard.hms.dbmi.bd2k.irct.model.resource.implementation +  + + edu.harvard.hms.dbmi.bd2k.irct.security   @@ -206,24 +218,14 @@

    Uses of java.util.List<Entity> -PathController.searchForOntology(Resource resource, - Entity resourcePath, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
    Searches a resource for a given ontology term from a given ontology.
    - - - -java.util.List<Entity> -PathController.searchForTerm(Resource resource, +PathController.searchForTerm(Resource resource, Entity resourcePath, - java.lang.String searchTerm, + FindInformationInterface findInformation, SecureSession session)
    Searches a resource for a given searchTerm.
    - + java.util.List<Entity> PathController.traversePath(Resource resource, Entity resourcePath, @@ -235,6 +237,204 @@

    Uses of + + +

    Uses of SecureSession in edu.harvard.hms.dbmi.bd2k.irct.event

    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type SecureSession 
    Modifier and TypeMethod and Description
    voidIRCTEventListener.afterAction(SecureSession session, + Action action) +
    Runs the event listeners after an action is run
    +
    voidIRCTEventListener.afterExecutionPlan(SecureSession session, + Executable executable) +
    Runs the event listeners after an execution plan is run
    +
    voidIRCTEventListener.afterFind(java.util.List<Entity> matches, + FindInformationInterface findInformation, + SecureSession session) +
    Runs the listeners after a find is executed
    +
    voidIRCTEventListener.afterJoin(SecureSession session, + IRCTJoin joinType) +
    Runs the event listeners after a join is run
    +
    voidIRCTEventListener.afterProcess(SecureSession session, + IRCTProcess process) +
    Runs the event listeners after a process is run
    +
    voidIRCTEventListener.afterQuery(SecureSession session, + Resource resource, + Query query) +
    Runs the event listeners after a query is run
    +
    voidIRCTEventListener.beforeAction(SecureSession session, + Action action) +
    Runs the event listeners before an action is run
    +
    voidIRCTEventListener.beforeExecutionPlan(SecureSession session, + Executable executable) +
    Runs the event listener before an execution plan is run
    +
    voidIRCTEventListener.beforeFind(Resource resource, + Entity resourcePath, + java.util.List<FindInformationInterface> findInformation, + SecureSession session) +
    Runs the event listeners before a find is executed
    +
    voidIRCTEventListener.beforeJoin(SecureSession session, + IRCTJoin joinType) +
    Runs the event listeners before a join is run
    +
    voidIRCTEventListener.beforeProcess(SecureSession session, + IRCTProcess process) +
    Runs the event listeners before a process is run
    +
    voidIRCTEventListener.beforeQuery(SecureSession session, + Resource resource, + Query query) +
    Runs the event listeners before a query is run
    +
    + +
  • + + +

    Uses of SecureSession in edu.harvard.hms.dbmi.bd2k.irct.event.action

    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.action with parameters of type SecureSession 
    Modifier and TypeMethod and Description
    voidBeforeAction.fire(SecureSession session, + Action action) 
    voidAfterAction.fire(SecureSession session, + Action action) 
    voidBeforeExecutionPlan.fire(SecureSession session, + Executable executable) 
    voidAfterExecutionPlan.fire(SecureSession session, + Executable executable) +
    An action that is run after an execution plan is completed
    +
    voidBeforeJoin.fire(SecureSession session, + IRCTJoin joinType) 
    voidAfterJoin.fire(SecureSession session, + IRCTJoin joinType) 
    voidBeforeProcess.fire(SecureSession session, + IRCTProcess process) 
    voidAfterProcess.fire(SecureSession session, + IRCTProcess process) 
    voidBeforeQuery.fire(SecureSession session, + Resource resource, + Query query) 
    voidAfterQuery.fire(SecureSession session, + Resource resource, + Query query) 
    +
    • +
  • + + +

    Uses of SecureSession in edu.harvard.hms.dbmi.bd2k.irct.event.find

    + + + + + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.find with parameters of type SecureSession 
    Modifier and TypeMethod and Description
    voidAfterFind.fire(java.util.List<Entity> matches, + FindInformationInterface findInformation, + SecureSession session) 
    voidBeforeFind.fire(Resource resource, + Entity resourcePath, + java.util.List<FindInformationInterface> findInformation, + SecureSession session) 
    +
  • @@ -281,27 +481,35 @@

    Uses of java.util.List<Entity> +PathResourceImplementationInterface.find(Entity path, + FindInformationInterface findInformation, + SecureSession session) +
    Given a path find all entities that match the finds
    + + + +java.util.List<Entity> PathResourceImplementationInterface.getPathRelationship(Entity path, OntologyRelationship relationship, SecureSession session)
    Given a path give all the associated paths of that type of relationship
    - + Result QueryResourceImplementationInterface.getResults(SecureSession session, Result result)
    Returns the results of the query if they are available
    - + Result ProcessResourceImplementationInterface.getResults(SecureSession session, Result result)
    Returns the results of the process if they are available
    - + Result ProcessResourceImplementationInterface.runProcess(SecureSession session, IRCTProcess process, @@ -309,7 +517,7 @@

    Uses of Run the given process - + Result QueryResourceImplementationInterface.runQuery(SecureSession session, Query qep, @@ -317,24 +525,6 @@

    Uses of Runs the given query - -java.util.List<Entity> -PathResourceImplementationInterface.searchOntology(Entity path, - java.lang.String ontologyType, - java.lang.String ontologyTerm, - SecureSession session) -
    Given a given path find all the ontology terms of the given ontology type - that are in that path.
    - - - -java.util.List<Entity> -PathResourceImplementationInterface.searchPaths(Entity path, - java.lang.String searchTerm, - SecureSession session) -
    Given a given path find all the searchTerms that are in that path.
    - -

    • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/Token.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/Token.html index 7ea88e2..fcf3bdc 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/Token.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/Token.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.security.Token - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/User.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/User.html index ff338f8..a3e58bf 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/User.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/class-use/User.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.security.User - + @@ -87,6 +87,14 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.result +  + + edu.harvard.hms.dbmi.bd2k.irct.model.result   @@ -172,6 +180,46 @@

    Uses of + + +

    Uses of User in edu.harvard.hms.dbmi.bd2k.irct.event

    + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event with parameters of type User 
    Modifier and TypeMethod and Description
    voidIRCTEventListener.beforeGetResult(User user, + java.lang.Long resultId) +
    Runs the event listeners before a result is retrieved
    +
    + +
  • + + +

    Uses of User in edu.harvard.hms.dbmi.bd2k.irct.event.result

    + + + + + + + + + + + + +
    Methods in edu.harvard.hms.dbmi.bd2k.irct.event.result with parameters of type User 
    Modifier and TypeMethod and Description
    voidBeforeGetResult.fire(User user, + java.lang.Long resultId) 
    +
  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-frame.html index 7c3792d..2761c25 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.security - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-summary.html index 118d363..adc1dda 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.security - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-tree.html index 7a9d80e..6d67814 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.security Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-use.html index 435f0e0..dbc4f08 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/security/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.security - + @@ -91,6 +91,22 @@

      +edu.harvard.hms.dbmi.bd2k.irct.event +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.action +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.find +  + + +edu.harvard.hms.dbmi.bd2k.irct.event.result +  + + edu.harvard.hms.dbmi.bd2k.irct.executable   @@ -159,6 +175,82 @@

    • +
  • + + + + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.security used by edu.harvard.hms.dbmi.bd2k.irct.event 
    Class and Description
    SecureSession +
    A secure session contains information about a user, the token associated with + that user, and the unique key generated for that combination.
    +
    User +
    A basic user representation.
    +
    +
    • +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.security used by edu.harvard.hms.dbmi.bd2k.irct.event.action 
    Class and Description
    SecureSession +
    A secure session contains information about a user, the token associated with + that user, and the unique key generated for that combination.
    +
    +
    • +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.security used by edu.harvard.hms.dbmi.bd2k.irct.event.find 
    Class and Description
    SecureSession +
    A secure session contains information about a user, the token associated with + that user, and the unique key generated for that combination.
    +
    +
    • +
  • + + + + + + + + + + + + +
    Classes in edu.harvard.hms.dbmi.bd2k.irct.model.security used by edu.harvard.hms.dbmi.bd2k.irct.event.result 
    Class and Description
    User +
    A basic user representation.
    +
    +
  • diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationReturnType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationReturnType.html index 27ddec8..d70f33e 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationReturnType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationReturnType.html @@ -2,9 +2,9 @@ - + VisualizationReturnType - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationType.html index 6fac61d..d24e301 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/VisualizationType.html @@ -2,9 +2,9 @@ - + VisualizationType - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationReturnType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationReturnType.html index a52829e..451d645 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationReturnType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationReturnType.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.visualization.VisualizationReturnType - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationType.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationType.html index 98c7b69..6fbfdef 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationType.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/class-use/VisualizationType.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.model.visualization.VisualizationType - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-frame.html index 1203568..20b1b3d 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.visualization - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-summary.html index e1c2318..a61ca85 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.visualization - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-tree.html index 960eae7..1854a87 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.model.visualization Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-use.html index 7f5c8d3..6b7a159 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/model/visualization/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct.model.visualization - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-frame.html index f0aea99..9634b77 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-summary.html index dd5b8f4..ef05a9c 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-tree.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-tree.html index e98810c..cffc9ca 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-tree.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-tree.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct Class Hierarchy - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-use.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-use.html index 6ea49b7..f4ee6c0 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-use.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/package-use.html @@ -2,9 +2,9 @@ - + Uses of Package edu.harvard.hms.dbmi.bd2k.irct - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/SecurityUtility.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/SecurityUtility.html index e8805f1..fd664f0 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/SecurityUtility.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/SecurityUtility.html @@ -2,9 +2,9 @@ - + SecurityUtility - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/class-use/SecurityUtility.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/class-use/SecurityUtility.html index 6ca3b08..e276374 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/class-use/SecurityUtility.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/class-use/SecurityUtility.html @@ -2,9 +2,9 @@ - + Uses of Class edu.harvard.hms.dbmi.bd2k.irct.security.SecurityUtility - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-frame.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-frame.html index 987c8eb..5cb09b9 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-frame.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-frame.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.security - + diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-summary.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-summary.html index 7bd2552..3a77d67 100644 --- a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-summary.html +++ b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/security/package-summary.html @@ -2,9 +2,9 @@ - + edu.harvard.hms.dbmi.bd2k.irct.security - + @@ -44,7 +44,7 @@