README.md

Cistrome Explorer

Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Cistrome Data Browser Toolkit

• Demo
• Documentation

Development

Install dependencies with yarn (v1):

yarn

Run development server for demo app:

yarn start

Run tests:

yarn test
# or
yarn test --watch

Production

Build demo app for production:

yarn build

Build for NPM package:

yarn build-pkg

Docs

yarn docs

Data processing resources

• Notebooks for short analyses or file conversions: ./notebooks/
• Pipeline for combining CistromeDB bigWig files into HiGlass multivec (HDF5-based) files: ./pipelines/cistrome-to-multivec/

Presentations and other resources

• Video & Slides for NCI ITCR 2020 virtual poster
• Poster for BioVis@ISMB 2020

Related repositories

• HiGlass
• HiGlass Server and our fork Cistrome Explorer HiGlass Server
  • To deploy cistrome-explorer-higlass-server to AWS ECS please refer to the modified docker-context/ directory and associated README here.
• clodius
• pybbi