The table below lists the samples for GEO Series GSE115092 and establishes the correspondence between the different files.
| GEO code | Title | Processed data file name (GEO supplementary file) | Raw file name |
|---|---|---|---|
| GSM3164970 | WT Input rep1 | AH119spikein-060717_trimmed_S288c_SK1_Yue_PM_FE.bdg | HLYHHAFXX_n01_ah119spikea-062817.fastq.gz |
| GSM3164971 | WT anti-Red1 ChIP rep1 | HLYHHAFXX_n01_ah119spikeb-062817.fastq.gz | |
| GSM3164972 | WT Input rep2 | AH119spikein-100917_trimmed_S288c_SK1_Yue_PM_FE.bdg | HNKY2AFXX_n01_ah119spikea-100917.fastq.gz |
| GSM3164973 | WT anti-Red1 ChIP rep2 | HNKY2AFXX_n01_ah119spikeb-100917.fastq.gz | |
| GSM3164974 | WT Input rep3 | AH119spike-ChIP_122017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HW373AFXX_n01_ah119spike-inp_122017.fastq.gz |
| GSM3164975 | WT anti-Red1 ChIP rep3 | HW373AFXX_n01_ah119spike-chip_122017.fastq.gz | |
| GSM3164976 | red1-pG162A Input rep1 | AH9048spikein-060717_trimmed_S288c_SK1_Yue_PM_FE.bdg | HLYHHAFXX_n01_ah9048spikea-062817.fastq.gz |
| GSM3164977 | red1-pG162A anti-Red1 ChIP rep1 | HLYHHAFXX_n01_ah9048spikeb-062817.fastq.gz | |
| GSM3164978 | red1-pG162A Input rep2 | AH9048spikein-100917_trimmed_S288c_SK1_Yue_PM_FE.bdg | HNKY2AFXX_n01_ah9048spikea-100917.fastq.gz |
| GSM3164979 | red1-pG162A anti-Red1 ChIP rep2 | HNKY2AFXX_n01_ah9048spikeb-100917.fastq.gz | |
| GSM3164980 | dot1Δ Input rep1 | AH8104spikein-100917_trimmed_S288c_SK1_Yue_PM_FE.bdg | HNKY2AFXX_n01_ah8104spikea-100917.fastq.gz |
| GSM3164981 | dot1Δ anti-Red1 ChIP rep1 | HNKY2AFXX_n01_ah8104spikeb-100917.fastq.gz | |
| GSM3164982 | dot1Δ Input rep2 | ah8104spikein_11082017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HVJH5AFXX_n01_ah8104spike-inp_11082017.fastq.gz |
| GSM3164983 | dot1Δ anti-Red1 ChIP rep2 | HVJH5AFXX_n01_ah8104spike-chip_11082017.fastq.gz | |
| GSM3164984 | dot1Δ set1Δ Input rep1 | AH8583spikein-100917_trimmed_S288c_SK1_Yue_PM_FE.bdg | HNKY2AFXX_n01_ah8583spikea-100917.fastq.gz |
| GSM3164985 | dot1Δ set1Δ anti-Red1 ChIP rep1 | HNKY2AFXX_n01_ah8583spikeb-100917.fastq.gz | |
| GSM3164986 | dot1Δ set1Δ Input rep2 | ah8583spikein_11082017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HVJH5AFXX_n01_ah8583spike-inp_11082017.fastq.gz |
| GSM3164987 | dot1Δ set1Δ anti-Red1 ChIP rep2 | HVJH5AFXX_n01_ah8583spike-chip_11082017.fastq.gz | |
| GSM3164988 | dot1Δ rec8Δ Input rep1 | ah8115spikein_11082017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HVJH5AFXX_n01_ah8115spike-inp_11082017.fastq.gz |
| GSM3164989 | dot1Δ rec8Δ anti-Red1 ChIP rep1 | HVJH5AFXX_n01_ah8115spike-chip_11082017.fastq.gz | |
| GSM3164990 | dot1Δ rec8Δ Input rep2 | AH8115spike-Red1-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8115spike-red1-inp_0118.fastq.gz |
| GSM3164991 | dot1Δ rec8Δ anti-Red1 ChIP rep2 | HWKGGAFXX_n01_ah8115spike-red1-chip_0118.fastq.gz | |
| GSM3164992 | set1Δ Input rep1 | AH8584spikein-100917_trimmed_S288c_SK1_Yue_PM_FE.bdg | HNKY2AFXX_n01_ah8584spikea-100917.fastq.gz |
| GSM3164993 | set1Δ anti-Red1 ChIP rep1 | HNKY2AFXX_n01_ah8584spikeb-100917.fastq.gz | |
| GSM3164994 | set1Δ Input rep2 | ah8584spikein_11082017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HVJH5AFXX_n01_ah8584spike-inp_11082017.fastq.gz |
| GSM3164995 | set1Δ anti-Red1 ChIP rep2 | HVJH5AFXX_n01_ah8584spike-chip_11082017.fastq.gz | |
| GSM3164996 | rec8Δ Input rep1 | ah8151spikein_11082017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HVJH5AFXX_n01_ah8151spike-inp_11082017.fastq.gz |
| GSM3164997 | rec8Δ anti-Red1 ChIP rep1 | HVJH5AFXX_n01_ah8151spike-chip_11082017.fastq.gz | |
| GSM3164998 | rec8Δ Input rep2 | AH8151spike-Red1-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8151spike-red1-inp_0118.fastq.gz |
| GSM3164999 | rec8Δ anti-Red1 ChIP rep2 | HWKGGAFXX_n01_ah8151spike-red1-chip_0118.fastq.gz | |
| GSM3165000 | hop1Δ Input rep1 | AH9120spikein-100917_trimmed_S288c_SK1_Yue_PM_FE.bdg | HNKY2AFXX_n01_ah9120spikea-100917.fastq.gz |
| GSM3165001 | hop1Δ anti-Red1 ChIP rep1 | HNKY2AFXX_n01_ah9120spikeb-100917.fastq.gz | |
| GSM3165002 | hop1Δ Input rep2 | ah9120spikein_11082017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HVJH5AFXX_n01_ah9120spike-inp_11082017.fastq.gz |
| GSM3165003 | hop1Δ anti-Red1 ChIP rep2 | HVJH5AFXX_n01_ah9120spike-chip_11082017.fastq.gz | |
| GSM3165004 | ycs4S/RED1 Input rep1 | AH8218spike-chip_122017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HW373AFXX_n01_ah8218spike-inp_122017.fastq.gz |
| GSM3165005 | ycs4S/RED1 anti-Red1 ChIP rep1 | HW373AFXX_n01_ah8218spike-chip_122017.fastq.gz | |
| GSM3165006 | ycs4S/RED1 Input rep2 | AH8218spike-Red1-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8218spike-red1-inp_0118.fastq.gz |
| GSM3165007 | ycs4S/RED1 anti-Red1 ChIP rep2 | HWKGGAFXX_n01_ah8218spike-red1-chip_0118.fastq.gz | |
| GSM3165008 | red1/RED1 Input rep1 | AH8220spike-chip_122017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HW373AFXX_n01_ah8220spike-inp_122017.fastq.gz |
| GSM3165009 | red1/RED1 anti-Red1 ChIP rep1 | HW373AFXX_n01_ah8220spike-chip_122017.fastq.gz | |
| GSM3165010 | red1/RED1 Input rep2 | AH8220spike-Red1-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8220spike-red1-inp_0118.fastq.gz |
| GSM3165011 | red1/RED1 anti-Red1 ChIP rep2 | HWKGGAFXX_n01_ah8220spike-red1-chip_0118.fastq.gz | |
| GSM3165012 | ycs4S/ycs4S Input rep1 | AH7011spike-chip_122017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HW373AFXX_n01_ah7011spike-inp_122017.fastq.gz |
| GSM3165013 | ycs4S/ycs4S anti-Red1 ChIP rep1 | HW373AFXX_n01_ah7011spike-chip_122017.fastq.gz | |
| GSM3165014 | ycs4S/ycs4S Input rep2 | AH7011spike-Red1-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah7011spike-red1-inp_0118.fastq.gz |
| GSM3165015 | ycs4S/ycs4S anti-Red1 ChIP rep2 | HWKGGAFXX_n01_ah7011spike-red1-chip_0118.fastq.gz | |
| GSM3165016 | ycs4S/red1 Input rep1 | AH8219spike-chip_122017_trimmed_S288c_SK1_Yue_PM_FE.bdg | HW373AFXX_n01_ah8219spike-inp_122017.fastq.gz |
| GSM3165017 | ycs4S/red1 anti-Red1 ChIP rep1 | HW373AFXX_n01_ah8219spike-chip_122017.fastq.gz | |
| GSM3165018 | ycs4S/red1 Input rep2 | AH8219spike-Red1-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8219spike-red1-inp_0118.fastq.gz |
| GSM3165019 | ycs4S/red1 anti-Red1 ChIP rep2 | HWKGGAFXX_n01_ah8219spike-red1-chip_0118.fastq.gz | |
| GSM3165020 | WT Input rep4 | AH119spike-gh2ax-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah119spike-gh2ax-inp_0118.fastq.gz |
| GSM3165021 | WT anti-gH2AX ChIP | HWKGGAFXX_n01_ah119spike-gh2ax-chip_0118.fastq.gz | |
| GSM3165022 | ycs4S/RED1 Input rep3 | AH8218spike-gh2ax-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8218spike-gh2ax-inp_0118.fastq.gz |
| GSM3165023 | ycs4S/RED1 anti-gH2AX ChIP | HWKGGAFXX_n01_ah8218spike-gh2ax-chip_0118.fastq.gz | |
| GSM3165024 | red1/RED1 Input rep3 | AH8220spike-gh2ax-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8220spike-gh2ax-inp_0118.fastq.gz |
| GSM3165025 | red1/RED1 anti-gH2AX ChIP | HWKGGAFXX_n01_ah8220spike-gh2ax-chip_0118.fastq.gz | |
| GSM3165026 | ycs4S/ycs4S Input rep3 | AH7011spike-gh2ax-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah7011spike-gh2ax-inp_0118.fastq.gz |
| GSM3165027 | ycs4S/ycs4S anti-gH2AX ChIP | HWKGGAFXX_n01_ah7011spike-gh2ax-chip_0118.fastq.gz | |
| GSM3165028 | ycs4S/red1 Input rep3 | AH8219spike-gh2ax-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah8219spike-gh2ax-inp_0118.fastq.gz |
| GSM3165029 | ycs4S/red1 anti-gH2AX ChIP | HWKGGAFXX_n01_ah8219spike-gh2ax-chip_0118.fastq.gz | |
| GSM3165030 | spo11-Y135F Input | AH4206spike-gh2ax-ChIP_011618_trimmed_S288c_SK1_Yue_PM_FE.bdg | HWKGGAFXX_n01_ah4206spike-gh2ax-inp_0118.fastq.gz |
| GSM3165031 | spo11-Y135F anti-gH2AX ChIP | HWKGGAFXX_n01_ah4206spike-gh2ax-chip_0118.fastq.gz | |
| GSM3165032 | WT 5% spike-in Input | ah119_5-95_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah119_5-95_spike-in_input.fastq.gz |
| GSM3165033 | WT 5% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah119_5-95_spike-in_chip.fastq.gz | |
| GSM3165034 | WT 10% spike-in Input | ah119_10-90_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah119_10-90_spike-in_input.fastq.gz |
| GSM3165035 | WT 10% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah119_10-90_spike-in_chip.fastq.gz | |
| GSM3165036 | WT 15% spike-in Input | ah119_15-85_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah119_15-85_spike-in_input.fastq.gz |
| GSM3165037 | WT 15% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah119_15-85_spike-in_chip.fastq.gz | |
| GSM3165038 | WT 20% spike-in Input | ah119_20-80_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah119_20-80_spike-in_input.fastq.gz |
| GSM3165039 | WT 20% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah119_20-80_spike-in_chip.fastq.gz | |
| GSM3165040 | WT 25% spike-in Input | ah119_25-75_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah119_25-75_spike-in_input.fastq.gz |
| GSM3165041 | WT 25% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah119_25-75_spike-in_chip.fastq.gz | |
| GSM3165042 | WT 30% spike-in Input | ah119_30-70_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah119_30-70_spike-in_input.fastq.gz |
| GSM3165043 | WT 30% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah119_30-70_spike-in_chip.fastq.gz | |
| GSM3165044 | red1-pG162A 5% spike-in Input | ah9048_5-95_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah9048_5-95_spike-in_input.fastq.gz |
| GSM3165045 | red1-pG162A 5% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah9048_5-95_spike-in_chip.fastq.gz | |
| GSM3165046 | red1-pG162A 10% spike-in Input | ah9048_10-90_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah9048_10-90_spike-in_input.fastq.gz |
| GSM3165047 | red1-pG162A 10% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah9048_10-90_spike-in_chip.fastq.gz | |
| GSM3165048 | red1-pG162A 15% spike-in Input | ah9048_15-85_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah9048_15-85_spike-in_input.fastq.gz |
| GSM3165049 | red1-pG162A 15% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah9048_15-85_spike-in_chip.fastq.gz | |
| GSM3165050 | red1-pG162A 20% spike-in Input | ah9048_20-80_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah9048_20-80_spike-in_input.fastq.gz |
| GSM3165051 | red1-pG162A 20% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah9048_20-80_spike-in_chip.fastq.gz | |
| GSM3165052 | red1-pG162A 25% spike-in Input | ah9048_25-75_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah9048_25-75_spike-in_input.fastq.gz |
| GSM3165053 | red1-pG162A 25% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah9048_25-75_spike-in_chip.fastq.gz | |
| GSM3165054 | red1-pG162A 30% spike-in Input | ah9048_30-70_spike-in_06032018_trimmed_S288c_SK1_Yue_PM_FE.bdg | HYKCJAFXX_n01_ah9048_30-70_spike-in_input.fastq.gz |
| GSM3165055 | red1-pG162A 30% spike-in anti-red1 ChIP | HYKCJAFXX_n01_ah9048_30-70_spike-in_chip.fastq.gz |