pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools", "setuptools-scm"]

[project]
authors = [{name = "Michael Hoffman", email = "michael.hoffman@utoronto.ca"}]
classifiers = [
  "Natural Language :: English",
  "Development Status :: 5 - Production/Stable",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved :: GNU General Public License v2 (GPLv2)",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Operating System :: Unix",
  "Programming Language :: Python :: 3",
]
# Exclude PyTables 3.4.1 - incorrect binary distribution causes core dumps
# See:
# https://bitbucket.org/hoffmanlab/genomedata/issues/38/pytables-341-causes-a-core-dump-when
dependencies = [
  "numpy",
  "tables>=3.0,!=3.4.1",
  "six",
  "textinput>=0.2.0",
  "path>=16.12",
  "pybigwig",
]
description = "tools for accessing large amounts of genomic data"
dynamic = ["version"]
name = "genomedata"
readme = "README.rst"
requires-python = ">=3.9"

[project.license]
text = "GPL-2.0-only"

[project.urls]
"Bug Tracker" = "https://github.com/hoffmangroup/genomedata/issues"
"Download" = "https://pypi.python.org/pypi/genomedata"
"Homepage" = "https://hoffmanlab.org/proj/genomedata"

[project.scripts]
genomedata-close-data = "genomedata._close_data:main"
genomedata-erase-data = "genomedata._erase_data:main"
genomedata-hardmask = "genomedata._hardmask:main"
genomedata-histogram = "genomedata._histogram:main"
genomedata-info = "genomedata._info:main"
genomedata-load = "genomedata.load_genomedata:main"
genomedata-load-assembly = "genomedata._load_seq:main"
genomedata-load-data = "genomedata._load_data:main"
genomedata-load-seq = "genomedata._load_seq:main"
genomedata-open-data = "genomedata._open_data:main"
genomedata-query = "genomedata._query:main"
genomedata-report = "genomedata._report:main"

[tool.setuptools]
# Override setuptools autodiscovery algorithm
packages = ["genomedata"]

# Enable version inference from scm
[tool.setuptools_scm]

[tool.mypy]
ignore_missing_imports = true

[tool.cibuildwheel]
# Only build on CPython 3.9 as minimum targeted abi
build = "cp39-manylinux_x86_64"

[tool.cibuildwheel.linux]
before-all = "yum -y install hdf5-devel"