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Touchstone exists for simplereverse but is never checked #131

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EricR86 opened this issue Dec 13, 2018 · 0 comments
Open

Touchstone exists for simplereverse but is never checked #131

EricR86 opened this issue Dec 13, 2018 · 0 comments
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bug Something isn't working minor

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@EricR86
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EricR86 commented Dec 13, 2018

Original report (BitBucket issue) by Rachel Chan (Bitbucket: rcwchan).


In the test case simplereverse, a touchstone directory exists but it seems the last time it was updated was 2012 and is not actually part of the current test suite.

Specifically, in the simplereverse run.sh script, there is only the command to run train/identify for segway. The program does not to enter the run directory and compare with the touchstone afterwards:

#!python

...

# seed from python -c "import random; print random.randrange(2**32)"
SEGWAY_RAND_SEED=4014068903 segway "$cluster_arg" \
    --include-coords="../include-coords.bed" \
    --track=testtrack1A,testtrack1B --track=testtrack2A,testtrack2B \
    --num-labels=4 --reverse-world=1 \
    train "../simpleconcat.genomedata" traindir

segway "$cluster_arg" --include-coords="../include-coords.bed" \
    identify "../simpleconcat.genomedata" traindir identifydir

@EricR86 EricR86 added minor bug Something isn't working labels Apr 6, 2020
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