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AnnoKit

Reference genome annotation file processing toolset

main functions

  • searchs: given a genome range, find genes within the range and related information about the gene.

  • maps: direct related query between gene name(symbol) and gene ID(Ensembl).

  • inquires: given one or more gene names or IDs, query the detailed information of the corresponding genes, transcripts, exons and other related gene structures.

gene structure

eukaryote

prokaryote

install

git clone git@github.com:iOLIGO/AnnoKit.git
pip install AnnoKit/dist/AnnoKit-1.0.0.tar.gz

GTF

gtf file analysis