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vignettes/workshop_isee_extension.Rmd

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## Existing iSEE extensions
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## Overview
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In the next 10 minutes, we will:
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* Run code from the iSEEpathways vignette [Integration with other panels](https://isee.github.io/iSEEpathways/articles/integration.html)
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* Launch an iSEE app that includes panels implemented in extension packages
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### iSEE extension packages
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| Package | Description |
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|:--------|:-------------------------------------------------|
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| [iSEE](https://github.com/iSEE/iSEE) | Core functionality. |
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| [iSEEde](https://github.com/iSEE/iSEEde) | Extension for differential expression analysis. |
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| [iSEEhex](https://github.com/iSEE/iSEEhex) | Extension for summarisation into hexagonal bins. |
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| [iSEEhub](https://github.com/iSEE/iSEEhub) | Extension for access to the Bioconductor `r BiocStyle::Biocpkg("ExperimentHub")`. |
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| [iSEEindex](https://github.com/iSEE/iSEEindex) | Extension for access to custom collectins of local and remote data sets. |
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| [iSEEpathways](https://github.com/iSEE/iSEEpathways) | Extension for pathway analysis. |
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| [iSEEu](https://github.com/iSEE/iSEEu) | The 'iSEE universe': Extension for miscellaneous and experimental functionality. |
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### Input data
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The iSEEpathways vignette [Integration with other panels](https://isee.github.io/iSEEpathways/articles/integration.html) can also be accessed locally using the R code `vignette("integration", package = "iSEEpathways")`.
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Plan:
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* Run code from the iSEEpathways vignette https://isee.github.io/iSEEpathways/articles/integration.html

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