Pingu: DE & {sys,dot}files

Pingu is my personal dotfiles repository, which creates a Desktop Environment (DE) based on Gentoo’s Portage package management tool, which manages packages from its source code; thus, building from source the entire GNU/Linux system.

The layout of this repository is based on a technique I’ve recently taken to calling it the Git bare dotfiles organization strategy, which is extensively explained and discussed both in this 2016 Hacker News thread by the user StreakyCobra, and in an article published by Atlassian, in their Git tutorials section.

This technique, then, consists in creating a bare repository (the .git directory in a complete repo with its worktree there as well) in $HOME/.pingu, and defining the worktree as the / (root) of the entire filesystem. This is specified command-based, as such:

$  git --git-dir=$HOME/.pingu --work-tree=/

But, for the sake of convenience, this command is aliased to the pingu keyword, which can be used to issue commands to perform normal Git operations under the dotfiles repository, located in this case under $HOME/.pingu.

This work and all its documentation is licensed under the Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) License.
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. \ This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Install media

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Official Gentoo Minimal Installation ISO

This is the URL pattern where the ISO lives (updated periodically): https://distfiles.gentoo.org/releases/amd64/autobuilds/current-install-amd64-minimal/install-amd64-minimal-*.iso, where * is the timestamp taken when that particular ISO was built.

Assume $ISO is the previous URL.

A $ISO.DIGESTS file is available, which provides a set of hashes to verify the integrity of the downloaded ISO. If only wanted a SHA256 hash, the file $ISO.sha256 file can be downloaded instead.

Also, a $ISO.asc file is available, which contains the PGP signature of the downloaded ISO. In order to verify the authenticity of the signature, one must do:

$  gpg --auto-key-locate=clear,nodefault,wkd --locate-key releng@gentoo.org
$  gpg --verify install-amd64-minimal-*.iso.asc

Alternative GNU/Linux LiveCD ISO

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Installation

Installation guide of the GNU/Linux distribution offered by Gentoo.

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Disks preparation

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Partitioning

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#  cfdisk /dev/vda

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LABEL	MOUNTPOINT	PARTITION TYPE	FORMAT	SIZE
EFI	/boot/EFI	EFI System	fat32	128M
BOOT	/boot	Linux filesystem	ext4	896M
SYS	/	Linux filesystem	ext4	REST

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#  cfdisk /dev/vda

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LABEL	MOUNTPOINT	PARTITION TYPE	FORMAT	SIZE
DATA	$HOME/data	Linux filesystem	ext4	ALL

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Formatting and mounting root partition

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#  mkfs.vfat -F 32 -n EFI /dev/vda1
#  mkfs.ext4 -L BOOT /dev/vda2
#  mkfs.ext4 -L SYS /dev/vda3
#  mkfs.ext4 -L DATA /dev/vdb1

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#  wipefs /dev/{vda*,vdb*}

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#  mount -L SYS /mnt/system --mkdir

Stage-3 Base System

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#  cd /mnt/system

This is the URL pattern where the Stage-3 tarball lives (updated periodically): https://distfiles.gentoo.org/releases/amd64/autobuilds/current-install-amd64-minimal/stage3-amd64-desktop-openrc-*.tar.xz, where * is the timestamp taken when that particular tarball was built.

Assume $STAGE3 is the previous URL.

A $STAGE3.DIGESTS file is available, which provides a set of hashes to verify the integrity of the downloaded tarball. If only wanted a SHA256 hash, the file $STAGE3.sha256 file can be downloaded instead.

Also, a $STAGE3.asc file is available, which contains the PGP signature of the downloaded tarball. In order to verify the authenticity of the signature, one must do:

$  gpg --auto-key-locate=clear,nodefault,wkd --locate-key releng@gentoo.org
$  gpg --verify stage3-amd64-desktop-openrc-*.tar.xz.asc

After all is on check, unpack the downloaded tarball (from within /mnt/system root’s mountpoint) by doing:

#  tar -xpvf stage3-amd64-desktop-openrc-*.tar.xz --xattrs-include='*.*' --numeric-owner

The --xattrs-include='*.*' argument is used to include preservation of the the extended attributes in all namespaces stored in the archive. Also, the --numeric-owner argument is used to ensure that the user and group IDs of the files being extracted from the tarball will remain the same as Gentoo’s release engineering team intended (even if adventurous users are not using official Gentoo live environments).

Building Target System

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Compile options

Edit the file /mnt/system/etc/portage/make.conf accordingly to the specific hardware. The proposed skeleton is suggested in order to have this system configuration.

There are several things that might need a change. Let’s go through them, discussing for each one its possible values:

-march=: This setting specifies the name of the target architecture. With this setting set, GCC will be free to generate instructions that work on the specified CPU, but (typically) not on earlier CPUs in the architecture family. A commonly used value is native, as that tells the compiler to select the target architecture of the current system (if GCC is able to detect it). Other common values are znver1 (Ryzen 1000 and 2000 series), znver2 (Ryzen 3000, 4000, 5000, and EPYC 7xx2 series), znver3 (5000 and EPYC 7xx3 series), alderlake (Intel 12th Gen), skylake (Intel 6-11th Gen), etc. This also can be searched online, or guessed by GCC itself (issuing gcc -Q -march=native --help=target | grep march | head -n 1 | tr -d ' \t').
-j: This setting sets the number of jobs that make will try to execute in a parallel manner. This can be equal to the number of CPUs (threads) seen by the kernel, but I enjoy setting it to a lower number to be able to multitask quite efficiently while emerging (compiling/building) a set of packages, e.g. -j10 with 16 CPUs.
VIDEO_CARDS: This setting should be configured appropriately depending on the available GPU(s). Common choices include nouveau (NVIDIA GPU - Reverse Engineered FOSS Driver), nvidia (NVIDIA GPU - Privative Driver), amdgpu radeonsi (AMD Modern GPU), radeon (AMD Old GPU), intel (Intel GPU), virgl (Virtio GPU), vmware (VMware SVGA GPU), virtualbox (Virtualbox GPU), etc.
ACCEPT_LICENSE: This setting can be set to override the system wide accepted default licenses in the profiles. The license groups defined in the Gentoo repository, managed by the Gentoo Licenses project, are:
- @GPL-COMPATIBLE: GPL compatible licenses approved by the Free Software Foundation <ref>.
- @FSF-APPROVED: Free software licenses approved by the FSF. Includes @GPL-COMPATIBLE.
- @OSI-APPROVED: Licenses approved by the Open Source Initiative <ref>.
- @MISC-FREE: Misc licenses that are probably free software, i.e. follow the Free Software Definition, but are not approved by either FSF or OSI <ref>.
- @FREE-SOFTWARE: Combines @FSF-APPROVED, @OSI-APPROVED and @MISC-FREE.
- @FSF-APPROVED-OTHER: FSF-approved licenses for “free documentation” and “works of practical use besides software and documentation” (including fonts).
- @MISC-FREE-DOCS: Misc licenses for free documents and other works (including fonts) that follow the free definition, but are NOT listed in @FSF-APPROVED-OTHER <ref>.
- @FREE-DOCUMENTS: Combines @FSF-APPROVED-OTHER and @MISC-FREE-DOCS.
- @FREE: Metaset of all licenses with the freedom to use, share, modify and share modifications. Combines @FREE-SOFTWARE and @FREE-DOCUMENTS.
- @BINARY-REDISTRIBUTABLE: Licenses that at least permit free redistribution of the software in binary form. Includes @FREE.
- @EULA: License agreements that try to take away your rights. These are more restrictive than “all-rights-reserved” or require explicit approval.

Copy DNS info

One thing still remains to be done before entering the new environment and that is copying over the DNS information in /etc/resolv.conf. This needs to be done to ensure that networking still works even after entering the new environment. /etc/resolv.conf contains the name servers for the network.

To copy this information, it is recommended to pass the -L, --dereference option to the cp command. This ensures that, if /etc/resolv.conf is a symbolic link, that the link’s target file is copied instead of the symbolic link itself. Otherwise in the new environment the symbolic link would point to a non-existing file (as the link’s target is most likely not available inside the new environment).

#  cp -L /etc/resolv.conf /mnt/system/etc/

Mounting necessary filesystems

In a few moments, the Linux root will be changed towards the new location. The filesystems that need to be made available are:

/proc: Pseudo-filesystem that it looks like regular files, but is generated on-the-fly by the Linux kernel.

#  mount -t proc /proc /mnt/system/proc

/sys: Pseudo-filesystem, like /proc, which it was once meant to replace, and is more structured than /proc.

#  mount -R /sys /mnt/system/sys
#  mount --make-rslave /mnt/system/sys

/dev: Regular file system which contains all devices, and it is partially managed by the Linux device manager (usually udev).

#  mount -R /dev /mnt/system/dev
#  mount --make-rslave /mnt/system/dev

/run: Temporary file system used for files generated at runtime, such as PID files or locks.

#  mount -B /run /mnt/system/run
#  mount --make-slave /mnt/system/run

The /proc location will be mounted on /mnt/system/proc whereas the others are bind-mounted. The latter means that, for instance, /mnt/system/sys will actually be /sys (it is just a second entry point to the same filesystem) whereas /mnt/system/proc is a new mount (instance so to speak) of the filesystem.

When using **non-Gentoo installation media**, this might not be sufficient. Some distributions make /dev/shm a symbolic link to /run/shm which, after the chroot, becomes invalid. Making /dev/shm a proper tmpfs mount up front can fix this:

#  test -L /dev/shm && rm /dev/shm && mkdir /dev/shm
#  mount -t tmpfs -o nosuid,nodev,noexec shm /dev/shm

Also ensure that mode 1777 is set:

#  chmod 1777 /dev/shm /run/shm

Entering the new environment

Now that all partitions are initialized and the base environment installed, it is time to enter the new installation environment by chrooting into it. This means that the session will change its root (most top-level location that can be accessed) from the current installation environment to the installation system (namely the initialized partitions). Hence the name, change root or chroot.

#  chroot /mnt/system /bin/bash
#  source /etc/profile
#  export PS1="(chroot) ${PS1}"

Now that the new environment has been entered, it is necessary to mount the BOOT and EFI partition. This will be important when it is time to compile the kernel and install the bootloader:

(chroot) #  mount -L BOOT /boot
(chroot) #  mount -L EFI /boot/EFI --mkdir

Configuring Portage

Next step is to install a snapshot of the Gentoo ebuild repository. This snapshot contains a collection of files that informs Portage about available software titles (for installation), which profiles the system administrator can select, package or profile specific news items, etc. This will fetch the latest snapshot (which is released on a daily basis) from one of Gentoo’s mirrors and install it onto the system:

(chroot) #  emerge-webrsync

It is possible to update the Gentoo ebuild repository to the latest version. This command will use the rsync protocol to update the Gentoo ebuild repository (which was fetched earlier on through emerge-webrsync) to the latest state:

(chroot) #  emerge --sync

When the Gentoo ebuild repository is synchronized, Portage may notice that new news items are available for reading. News items were created to provide a communication medium to push critical messages to users via the Gentoo ebuild repository.

List all of them with:

(chroot) #  eselect news list

Read all new items with:

(chroot) #  eselect news read

Or read specific items with:

(chroot) #  eselect news read <N>

Purge already read items with:

(chroot) #  eselect news purge

At this point, it is wise to update the system’s @world set so that a base can be established. This following step is necessary so the system can apply any updates or USE flag changes which have appeared since the stage3 was built and from any profile selection:

(chroot) #  emerge -vauDU @world

Configure the timezone with:

(chroot) #  ls /usr/share/zoneinfo
(chroot) #  echo "Europe/Madrid" > /etc/timezone
(chroot) #  emerge --config timezone-data

Configure the locales with:

(chroot) #  echo "en_US.UTF-8 UTF-8" > /etc/locale.gen
(chroot) #  locale-gen
(chroot) #  eselect locale list
(chroot) #  eselect locale set <N>

Reload the environment with:

(chroot) #  env-update
(chroot) #  source /etc/profile
(chroot) #  export PS1="(chroot) ${PS1}"

Building Kernel

Now it is time to configure and compile the kernel sources. For the purposes of the installation, there are several packages we need to get before proceeding to the actual building stage:

(chroot) #  emerge -va dev-python/pytest gentoo-sources linux-headers linux-firmware

Check current /usr/src/linux symlink:

(chroot) #  eselect kernel list

Change the symlink to the previously emerged version by doing:

(chroot) #  eselect kernel set <N>

Ensure the source tree is properly cleaned up:

(chroot) #  cd /usr/src/linux
(chroot) #  make mrproper

Generate a generic kernel configuration file, and open it up (.config) with the menuconfig editor:

(chroot) #  make menuconfig

Pass the unit test suite (pytest) to check for config errors:

(chroot) #  make testconfig

Build the kernel (vmlinux), its selected modules (*.ko) and the kernel compressed image (bzImage).

(chroot) #  KCFLAGS="$(grep -woP 'OPT_FLAGS="\K[^"]+' /etc/portage/make.conf)" nice make [-j<N>]

Add the -j<N> flag so that GNU Make can parallelize jobs, where N is the number of jobs to handle in parallel. The CFLAGS are passed in from Portage’s info (supplied previously in /etc/portage/make.conf)

As this has been already configured in /etc/portage/make.conf previously, it can be accessed directly:

Install the built modules into /lib/modules/<VERSION>:

(chroot) #  make modules_install

Export the API headers into ./usr, in case needed later on:

(chroot) #  make headers

Install the kernel’s needed resources in /boot, using the following mapping:

bzImage -> /boot/vmlinuz-<VERSION>
System.map -> /boot/System.map-<VERSION>
.config -> /boot/config-<VERSION>

If these files already existed in /boot prior to this step, then it renames them to *.old, in order to maintain a backup until the new version gets tested.

(chroot) #  make install

(…)

(chroot) #  emerge -va dracut

Create the first iteration of the initial ramdisk FS (i.e. initramfs or initrd):

(chroot) #  dracut --kver=<VERSION> --hostonly --early-microcode

Basic system configuration

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`fstab` file

Under Linux, all partitions used by the system must be listed in /etc/fstab. This file contains the mount points of those partitions (where they are seen in the file system structure), how they should be mounted and with what special options (automatically or not, whether users can mount them or not, etc.).

LABEL=EFI /boot/EFI vfat noauto,noatime 0 2
LABEL=BOOT /boot ext4 defaults,noatime,nodiratime 0 1
LABEL=SYS / ext4 defaults,noatime,nodiratime 0 1
LABEL=DATA /home/iwas/data ext4 defaults,noatime,nodiratime 0 2

`hostname` file

One of the choices the system administrator has to make is name their PC. This seems to be quite easy, but lots of users are having difficulties finding the appropriate name for the hostname. To speed things up, know that the decision is not final, as it can be changed afterwards.

(chroot) #  echo "sheldon" > /etc/hostname

`hosts` file

An important next step may be to inform this new system about other hosts in its network environment. Network host names can be defined in the /etc/hosts file. Adding host names here will enable host name to IP addresses resolution for hosts that are not resolved by the nameserver.

127.0.0.1 sheldon.swa2.ml sheldon localhost

Network configuration

There are many options available for configuring network interfaces. Most LAN networks operate a DHCP server. If this is the case, then using the dhcpcd program to obtain an IP address is recommended.

(chroot) #  emerge -va dhcpcd
(chroot) #  rc-update add dhcpcd default

Set root password

Set the root password using the passwd command:

(chroot) #  passwd

System logger

Some tools are missing from the stage3 archive because several packages provide the same functionality. It is now up to the user to choose which ones to install. The first tool to decision is a logging mechanism for the system. UNIX and Linux have an excellent history of logging capabilities; if needed, everything that happens on the system can be logged in a log file.

The package sysklogd offers the traditional set of system logging daemons. The default logging configuration works well out of the box which makes this package a good option for beginners.

(chroot) #  emerge -va sysklogd
(chroot) #  rc-update add sysklogd default

Time synchronization

It is important to use some method of synchronizing the system clock. This is usually done via the NTP protocol and software. Other implementations using the NTP protocol exist, like chrony. To set it up, do:

(chroot) #  emerge -va chrony
(chroot) #  rc-update add chronyd default

Filesystem tools

Depending on the filesystems used, it may be necessary to install the required file system utilities (for checking the filesystem integrity, (re)formatting file systems, etc.). Note that ext4 user space tools (e2fsprogs) are already installed as a part of the @system set.

For a basic approach, installing all VFAT-related FS userspace tools is a good starting point:

(chroot) #  emerge -va dosfstools

Bootloader

With the Linux kernel configured, system tools installed and configuration files edited, it is time to install the last important piece of a Linux installation: the bootloader. The bootloader is responsible for firing up the Linux kernel upon boot; without it, the system would not know how to proceed after the UEFI/BIOS firmware is loaded.

By default, the majority of Linux systems now rely upon GRUB. With no additional configuration, GRUB gladly supports older BIOS (“pc”) systems. With a small amount of configuration, necessary before build time, GRUB can support more than a half a dozen additional platforms.

(chroot) #  emerge -va grub

Next, install the necessary GRUB files to the /boot/grub/ directory via the grub-install command:

(chroot) #  grub-install --bootloader-id=GRUB --efi-directory=/boot/EFI --recheck

Then, generate a generic GRUB configuration file, with the grub-mkconfig command:

(chroot) #  grub-mkconfig -o /boot/grub/grub.cfg

Finishing

Working as root on a Unix/Linux system is dangerous and should be avoided as much as possible. Therefore it is strongly recommended to add a user for day-to-day use. For instance, before rebooting, let’s do so:

(chroot) #  useradd -m -s /bin/bash -G tty,wheel,audio,video,input,users iwas
(chroot) #  passwd iwas

Exit the chrooted environment and unmount all mounted partitions. Then type in that one magical command that initiates the final, true test: reboot.

(chroot) #  exit
#  cd
#  umount /mnt/system/dev/{shm,pts}
#  umount -R /mnt/system
#  reboot

Do not forget to remove the bootable media (ISO), otherwise it might be booted again instead of the new installed system.

Once booted to the newly built kernel, create the second and last iteration of the initrd image:

#  dracut --kver=<VERSION> --hostonly --early-microcode --force

With the installation finished and the system rebooted, if everything has gone well, we can now remove the downloaded stage3 tarball from the disk. Remember that it was downloaded to the / directory:

#  rm /stage3-*.tar.*

Pingu environment

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$  git clone --bare https://github.com/iwas-coder/pingu $HOME/.pingu

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#  git --git-dir=$HOME/.pingu --work-tree=/ checkout -f

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Main components

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i3

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As an add-on, I use the picom compositor (a fork of the initial compton project) to add transparency, shadows and animations to all windows and apps. Specifically, I am using the pijulius’s fork, which includes fantastic animation code to the project (the only one I tried that works perfectly for production).

For this reason, I’d like to give a shoutout to Istvan Petres for this fork and all its contributions, thank you!

$  cd ~/data/git/external
$  git clone https://github.com/pijulius/picom picom.pijulius
$  cd !$
$  git submodule update --init --recursive
$  meson setup --buildtype=release . build
$  ninja -C build
#  ln -s $(pwd)/build/src/picom /usr/local/bin

If wanted to reduce file size of the binary, using the upx utility, do:

$  upx --color --best build/src/picom

Kitty

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GNU Emacs

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Pingu: DE & {sys,dot}files

Table of Contents

Install media

Official Gentoo Minimal Installation ISO

Alternative GNU/Linux LiveCD ISO

Installation

Disks preparation

Partitioning

Formatting and mounting root partition

Stage-3 Base System

Building Target System

Compile options

Copy DNS info

Mounting necessary filesystems

Entering the new environment

Configuring Portage

Building Kernel

Basic system configuration

`fstab` file

`hostname` file

`hosts` file

Network configuration

Set root password

System logger

Time synchronization

Filesystem tools

Bootloader

Finishing

Pingu environment

Main components

i3

Kitty

GNU Emacs

Files

README.org

Latest commit

History

README.org

File metadata and controls

Pingu: DE & {sys,dot}files

Table of Contents

Install media

Official Gentoo Minimal Installation ISO

Alternative GNU/Linux LiveCD ISO

Installation

Disks preparation

Partitioning

Formatting and mounting root partition

Stage-3 Base System

Building Target System

Compile options

Copy DNS info

Mounting necessary filesystems

Entering the new environment

Configuring Portage

Building Kernel

Basic system configuration

fstab file

hostname file

hosts file

Network configuration

Set root password

System logger

Time synchronization

Filesystem tools

Bootloader

Finishing

Pingu environment

Main components

i3

Kitty

GNU Emacs

`fstab` file

`hostname` file

`hosts` file