|
2 | 2 |
|
3 | 3 | PISA is distributed with some software and data obtained from outside the IceCube Collaboration.
|
4 | 4 | The authors and any pertinent copyrights are listed below.
|
5 |
| -If you identify any mistakes in the below or find any other such components being distributed with PISA that are not listed here, please [email](jll1062+pisa@phys.psu.edu) or [file an issue](http://github.com/icecubeopensource/pisa). |
| 5 | +If you identify any mistakes in the below or find any other such components being distributed with PISA that are not listed here, please [email](analysis@icecube.wisc.edu) or [file an issue](https://github.com/icecube/pisa/issues). |
6 | 6 |
|
7 |
| -Unless noted below or in the contents of an individual file, all files distributed with PISA are Copyright (c) 2014-2017, The IceCube Collaboration, and are licensed under the Apache 2.0 license. |
| 7 | +Unless noted below or in the contents of an individual file, all files distributed with PISA are Copyright (c) 2014-2025, The IceCube Collaboration, and are licensed under the Apache 2.0 license. |
8 | 8 | See the LICENSE file for details.
|
9 | 9 |
|
| 10 | + |
| 11 | +## daemonflux |
| 12 | + |
| 13 | +The service [`flux.daemon_flux`](/pisa/stages/flux/daemon_flux) does not reproduce but calls upon the daemonflux software |
| 14 | +> https://github.com/mceq-project/daemonflux |
| 15 | +
|
| 16 | +based on the paper |
| 17 | +> J. P. Yanez, A. Fedynitch, Phys.Rev. D 107, 123037 (2023) |
| 18 | +
|
| 19 | +The software is subject to the following copyright: |
| 20 | +``` |
| 21 | +BSD 3-Clause License |
| 22 | +
|
| 23 | +Copyright (c) 2023, Anatoli Fedynitch |
| 24 | +
|
| 25 | +Redistribution and use in source and binary forms, with or without |
| 26 | +modification, are permitted provided that the following conditions are met: |
| 27 | +
|
| 28 | +1. Redistributions of source code must retain the above copyright notice, this |
| 29 | + list of conditions and the following disclaimer. |
| 30 | +
|
| 31 | +2. Redistributions in binary form must reproduce the above copyright notice, |
| 32 | + this list of conditions and the following disclaimer in the documentation |
| 33 | + and/or other materials provided with the distribution. |
| 34 | +
|
| 35 | +3. Neither the name of the copyright holder nor the names of its |
| 36 | + contributors may be used to endorse or promote products derived from |
| 37 | + this software without specific prior written permission. |
| 38 | +
|
| 39 | +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" |
| 40 | +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
| 41 | +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE |
| 42 | +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE |
| 43 | +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
| 44 | +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
| 45 | +SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
| 46 | +CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
| 47 | +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
| 48 | +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 49 | +``` |
| 50 | + |
10 | 51 | ## MCEq
|
11 | 52 |
|
12 |
| -The service `flux.mceq` does not reproduce but does call upon the MCEq software. |
13 |
| -> https://github.com/afedynitch/MCEq |
| 53 | +Files in the directory [`pisa_examples/resources/flux`](/pisa_examples/resources/flux) containing the name *MCEq* |
| 54 | +have been produced with the MCEq software |
| 55 | +> https://github.com/mceq-project/MCEq |
| 56 | +
|
| 57 | +The authors of that software / the paper that it is based upon |
| 58 | +> A. Fedynitch, R. Engel, T. K. Gaisser, F. Riehn, T. Stanev, EPJ Web Conf. 99 (2015) 08001, arXiv:1503.00544 |
| 59 | + request that anyone who uses their work to produce results cite their work. Please do so if you make use of either of the |
| 60 | +[`flux.mceq_barr`](/pisa/stages/flux/daemon_flux) or [`flux.mceq_barr_red`](/pisa/stages/flux/daemon_flux) services or of |
| 61 | +the script [`create_barr_sys_tables_mceq.py`](/pisa/scripts/create_barr_sys_tables_mceq.py) which calls upon MCEq. |
14 | 62 |
|
15 |
| -The authors of that software / the paper that it is based upon (A. Fedynitch, R. Engel, T. K. Gaisser, F. Riehn, T. Stanev) request that anyone who uses their work to produce results cite their work, so please do so if you make use the `flux.mceq` service. |
16 | 63 | The form of the citation that they request is found in their documentation at
|
17 | 64 | > http://mceq.readthedocs.io/en/latest/citations.html
|
18 | 65 |
|
19 |
| -## prob3numba |
20 |
| - |
21 |
| -Files in the directory `pisa/pisa/stages/osc/prob3numba` were adapted from the CUDA re-implementation of Prob3++ called prob3GPU |
22 |
| -> https://github.com/rcalland/probGPU |
23 |
| -
|
24 |
| -which is cited by the paper |
25 |
| -> R. G. Calland, A. C. Kaboth, and D. Payne, Journal of Instrumentation 9, P04016 (2014). |
| 66 | +The software is subject to the following copyright: |
| 67 | +``` |
| 68 | +BSD 3-Clause License |
| 69 | +
|
| 70 | +Copyright (c) 2019, Anatoli Fedynitch |
| 71 | +All rights reserved. |
| 72 | +
|
| 73 | +Redistribution and use in source and binary forms, with or without |
| 74 | +modification, are permitted provided that the following conditions are met: |
| 75 | +
|
| 76 | +* Redistributions of source code must retain the above copyright notice, this |
| 77 | + list of conditions and the following disclaimer. |
| 78 | +
|
| 79 | +* Redistributions in binary form must reproduce the above copyright notice, |
| 80 | + this list of conditions and the following disclaimer in the documentation |
| 81 | + and/or other materials provided with the distribution. |
| 82 | +
|
| 83 | +* Neither the name of the copyright holder nor the names of its |
| 84 | + contributors may be used to endorse or promote products derived from |
| 85 | + this software without specific prior written permission. |
| 86 | +
|
| 87 | +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" |
| 88 | +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
| 89 | +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE |
| 90 | +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE |
| 91 | +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
| 92 | +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
| 93 | +SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
| 94 | +CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
| 95 | +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
| 96 | +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 97 | +``` |
26 | 98 |
|
27 | 99 | ## Honda et al. flux models
|
28 | 100 |
|
29 |
| -Files in the directory `example_resources/flux` containing the name *honda* are from |
| 101 | +Files in the directory [`pisa_examples/resources/flux`](/pisa_examples/resources/flux) containing the name *honda* are from |
30 | 102 | > http://www.icrr.u-tokyo.ac.jp/~mhonda
|
31 | 103 |
|
32 | 104 | with associated paper
|
33 | 105 | > M. Honda, M. S. Athar, T. Kajita, K. Kasahara, and S. Midorikawa, Phys. Rev. D 92, 023004 (2015).
|
34 | 106 |
|
35 | 107 | ## Barr et al. flux models
|
36 | 108 |
|
37 |
| -Files in the directory `example_resources/flux` containing the name *bartol* are modified slightly (to have similar format to the work by Honda et al. cited above) from |
| 109 | +Files in the directory [`pisa_examples/resources/flux`](/pisa_examples/resources/flux) containing the name *bartol* are |
| 110 | +modified slightly (to have similar format to the work by Honda et al. cited above) from |
38 | 111 | > http://www-pnp.physics.ox.ac.uk/~barr/fluxfiles
|
39 | 112 |
|
40 | 113 | with associated paper
|
41 | 114 | > G. D. Barr, T. K. Gaisser, P. Lipari, S. Robbins, and T. Stanev, Phys. Rev. D 70, 023006 (2004).
|
42 | 115 |
|
| 116 | +## nuSQuIDS |
| 117 | + |
| 118 | +The service [`osc.nusquids`](/pisa/stages/osc/nusquids.py) does not reproduce but calls upon the nuSQuIDS software |
| 119 | +> https://github.com/arguelles/nuSQuIDS |
| 120 | +which is subject to the LGPL-3.0 license. |
| 121 | + |
| 122 | +## prob3numba |
| 123 | + |
| 124 | +Files in [`pisa/stages/osc/prob3numba`](/pisa/stages/osc/prob3numba) were adapted from the CUDA re-implementation of Prob3++ called prob3GPU |
| 125 | +> https://github.com/rcalland/probGPU |
| 126 | +
|
| 127 | +which is cited by the paper |
| 128 | +> R. G. Calland, A. C. Kaboth, and D. Payne, Journal of Instrumentation 9, P04016 (2014). |
| 129 | +
|
43 | 130 | ## PREM
|
44 | 131 |
|
45 |
| -The preliminary reference Earth model data in the `example_resources/osc` directory (named `PREM*`) come from the paper |
| 132 | +The preliminary reference Earth model data in the [`pisa_examples/resources/osc`](/pisa_examples/resources/osc) (named `PREM*`) come from the paper |
46 | 133 | > A. M. Dziewonski and D. L. Anderson, Physics of the Earth and Planetary Interiors 25, 297 (1981)
|
47 | 134 |
|
| 135 | +## emcee |
| 136 | + |
| 137 | +The files [`llh_client.py`](/pisa/utils/llh_client.py) and [`analysis.py`](/pisa/analysis/analysis.py) call upon the emcee software |
| 138 | +> https://github.com/dfm/emcee |
| 139 | +
|
| 140 | +which is subject to the following copyright: |
| 141 | +``` |
| 142 | +The MIT License (MIT) |
| 143 | +
|
| 144 | +Copyright (c) 2010-2021 Daniel Foreman-Mackey & contributors. |
| 145 | +
|
| 146 | +Permission is hereby granted, free of charge, to any person obtaining a copy |
| 147 | +of this software and associated documentation files (the "Software"), to deal |
| 148 | +in the Software without restriction, including without limitation the rights |
| 149 | +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell |
| 150 | +copies of the Software, and to permit persons to whom the Software is |
| 151 | +furnished to do so, subject to the following conditions: |
| 152 | +
|
| 153 | +The above copyright notice and this permission notice shall be included in all |
| 154 | +copies or substantial portions of the Software. |
| 155 | +
|
| 156 | +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR |
| 157 | +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, |
| 158 | +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE |
| 159 | +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER |
| 160 | +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, |
| 161 | +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE |
| 162 | +SOFTWARE. |
| 163 | +``` |
| 164 | + |
48 | 165 | ## KDE
|
49 | 166 |
|
50 |
| -The file `pisa/pisa/utils/vbwkde.py` contains an implementation of (part of) the paper |
| 167 | +The file [`vbwkde.py`](/pisa/pisa/utils/vbwkde.py) contains an implementation of (part of) the paper |
51 | 168 | > Z. I. Botev, J. F. Grotowski, and D. P. Kroese, Ann. Statist. 38, 2916 (2010).
|
52 | 169 |
|
53 | 170 | The functions `isj_bandwidth` and `fixed_point` therein are adapted directly from the Matlab implementation by Zdravko Botev at
|
@@ -84,7 +201,7 @@ and are therefore subject to the following copyright:
|
84 | 201 |
|
85 | 202 | ## Versioneer
|
86 | 203 |
|
87 |
| -Automatic versioning is provided by public-domain sofware The Versioneer, written by Brian Warner (files `versioneer.py` and `pisa/_version.py`). |
88 |
| -This project can be found at |
89 |
| -> https://github.com/warner/python-versioneer |
| 204 | +Automatic versioning is provided by public-domain sofware The Versioneer, written by Brian Warner |
| 205 | +(files `versioneer.py` and `pisa/_version.py`). This project can be found at |
| 206 | +> https://github.com/python-versioneer/python-versioneer |
90 | 207 |
|
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