error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'? #29590

yangdianxi · 2024-12-20T13:56:41Z

yangdianxi
Dec 20, 2024

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Issue or question about MOOSE

During moose installation, make -j 1, during the test, LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'? Do you have any suggestions on how to solve this?

(Optional) code in question / simulation log / errors

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Encountering Errors? Please include diagnostic output

(moose) user@user-virtual-machine:~/For_MOOSE/projects/moose/test$ make -j 1
WARNING: Conda package 'moose-libmesh' is currently at version '2024.07.27' and the required version is '2024.12.02'.
The correct version can be installed via:
    conda install moose-libmesh=2024.12.02
Rebuilding symlinks in /home/user/For_MOOSE/projects/moose/framework/build/header_symlinks
Checking if header needs updating: /home/user/For_MOOSE/projects/moose/framework/include/base/MooseRevision.h...
Creating Unity Directory /home/user/For_MOOSE/projects/moose/framework/build/unity_src
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/predictors_Unity.C
Copying default MOOSE configuration to: /home/user/For_MOOSE/projects/moose/framework/include/base/MooseConfig.h...
Symlinking MOOSE configure /home/user/For_MOOSE/projects/moose/framework/build/header_symlinks/MooseConfig.h
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/predictors_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/executors_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/executors_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/libtorch_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/libtorch_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/positions_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/positions_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/timeintegrators_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/timeintegrators_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/limiters_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/limiters_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/vectorpostprocessors_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/vectorpostprocessors_Unity.C...
Creating Unity /home/user/For_MOOSE/projects/moose/framework/build/unity_src/utils_Unity.C
Compiling C++ (in opt mode) /home/user/For_MOOSE/projects/moose/framework/build/unity_src/utils_Unity.C...
In file included from /home/user/For_MOOSE/projects/moose/framework/build/unity_src/utils_Unity.C:67:
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseValidityCheck(DM)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:136:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  136 |   LibmeshPetscCallQ(PetscObjectTypeCompare((PetscObject)dm, DMMOOSE, &ismoose));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseGetContacts(DM, std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, std::vector<PetscBool>&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:152:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  152 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseGetUnContacts(DM, std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&, std::vector<PetscBool>&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:168:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  168 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseGetSides(DM, std::vector<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:182:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  182 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseGetUnSides(DM, std::vector<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:193:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  193 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseGetBlocks(DM, std::vector<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:204:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  204 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseGetVariables(DM, std::vector<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:215:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  215 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetNonlinearSystem(DM, NonlinearSystemBase&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:226:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  226 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetName(DM, const std::string&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:240:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  240 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetParentDM(DM, DM_Moose*)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:254:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  254 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetVariables(DM, const std::set<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:271:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  271 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetBlocks(DM, const std::set<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:300:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  300 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetSides(DM, const std::set<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:315:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  315 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C: In function 'PetscErrorCode DMMooseSetUnSides(DM, const std::set<std::__cxx11::basic_string<char> >&)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/PetscDMMoose.C:330:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
  330 |   LibmeshPetscCallQ(DMMooseValidityCheck(dm));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
...
...
...
/home/user/For_MOOSE/projects/moose/framework/src/utils/SlepcSupport.C: In function 'PetscErrorCode Moose::SlepcSupport::mooseSlepcEPSSNESKSPSetPCSide(FEProblemBase&, EPS)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/SlepcSupport.C:1320:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
 1320 |   LibmeshPetscCallQ(mooseSlepcEPSGetSNES(eps, &snes));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
/home/user/For_MOOSE/projects/moose/framework/src/utils/SlepcSupport.C: In function 'PetscErrorCode Moose::SlepcSupport::mooseSlepcEPSMonitor(EPS, PetscInt, PetscInt, PetscScalar*, PetscScalar*, PetscReal*, PetscInt, void*)':
/home/user/For_MOOSE/projects/moose/framework/src/utils/SlepcSupport.C:1348:3: error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'?
 1348 |   LibmeshPetscCallQ(EPSGetST(eps, &st));
      |   ^~~~~~~~~~~~~~~~~
      |   LibmeshPetscCall
make: *** [/home/user/For_MOOSE/projects/moose/framework/build.mk:151：/home/user/For_MOOSE/projects/moose/framework/build/unity_src/utils_Unity.x86_64-conda-linux-gnu.opt.lo] 错误 1

GiudGiud · 2024-12-20T14:49:01Z

GiudGiud
Dec 20, 2024
Collaborator

Hello

Your moose and libmesh versions are not in sync. You should update libmesh. If you used conda, it says what to do right here

WARNING: Conda package 'moose-libmesh' is currently at version '2024.07.27' and the required version is '2024.12.02'.
The correct version can be installed via:
    conda install moose-libmesh=2024.12.02

4 replies

yangdianxi Dec 23, 2024
Author

(moose) user@user-virtual-machine:~/For_MOOSE/projects/moose/test$ conda install moose-dev=2024.12.02

Channels:

https://conda.software.inl.gov/public
idaholab
conda-forge
defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:

nothing provides __glibc >=2.28,<3.0.a0 needed by c-ares-1.34.3-heb4867d_0

Could not solve for environment specs
The following package could not be installed
└─ moose-dev 2024.12.02** is not installable because it requires
└─ moose-peacock 2024.11.13.* , which requires
└─ moose-mpi 2024.11.13.* , which requires
└─ moose-mpi-base [2024.11.13 mpich|2024.11.13 openmpi], which requires
└─ c-ares 1.34.3 heb4867d_0, which requires
└─ __glibc >=2.28,<3.0.a0 , which is missing on the system.

Yes，I tried this update, but it doesn't seem to be working.
Besides, I have tried to look at various versions of moose package and found that some of them are very low, which may be the problem of mismatch. Is there any good solution?Here are the versions

(moose) user@user-virtual-machine:~/For_MOOSE/projects/moose/test$ conda list | grep moose

packages in environment at /home/user/miniconda3/envs/moose:

GiudGiud Dec 23, 2024
Collaborator

see this
#29564 (reply in thread)

the current packages are a little bit more tied up in dependencies

conda create -n moose moose-dev mpich --channel https://conda.software.inl.gov/moose/pr-29104

should create an updated conda environment

yangdianxi Dec 24, 2024
Author

I don't know, every time I try to update the canda environment, it always fails

GiudGiud Dec 24, 2024
Collaborator

If you can't update, then use a version of moose from the same time as the conda moose-libmesh package you have on your machine

Use git log with since and until arguments to locate a good commit, then use git checkout to use that commit

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error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'? #29590

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error: 'LibmeshPetscCallQ' was not declared in this scope; did you mean 'LibmeshPetscCall'? #29590

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yangdianxi Dec 20, 2024

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Issue or question about MOOSE

(Optional) code in question / simulation log / errors

Encountering Errors? Please include diagnostic output

Replies: 1 comment · 4 replies

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GiudGiud Dec 20, 2024 Collaborator

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yangdianxi Dec 23, 2024 Author

packages in environment at /home/user/miniconda3/envs/moose:

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Dec 20, 2024

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