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notebook.tex
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% Default to the notebook output style
% Inherit from the specified cell style.
\documentclass[11pt]{article}
\usepackage[T1]{fontenc}
% Nicer default font (+ math font) than Computer Modern for most use cases
\usepackage{mathpazo}
% Basic figure setup, for now with no caption control since it's done
% automatically by Pandoc (which extracts  syntax from Markdown).
\usepackage{graphicx}
% We will generate all images so they have a width \maxwidth. This means
% that they will get their normal width if they fit onto the page, but
% are scaled down if they would overflow the margins.
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth
\else\Gin@nat@width\fi}
\makeatother
\let\Oldincludegraphics\includegraphics
% Set max figure width to be 80% of text width, for now hardcoded.
\renewcommand{\includegraphics}[1]{\Oldincludegraphics[width=.8\maxwidth]{#1}}
% Ensure that by default, figures have no caption (until we provide a
% proper Figure object with a Caption API and a way to capture that
% in the conversion process - todo).
\usepackage{caption}
\DeclareCaptionLabelFormat{nolabel}{}
\captionsetup{labelformat=nolabel}
\usepackage{adjustbox} % Used to constrain images to a maximum size
\usepackage{xcolor} % Allow colors to be defined
\usepackage{enumerate} % Needed for markdown enumerations to work
\usepackage{geometry} % Used to adjust the document margins
\usepackage{amsmath} % Equations
\usepackage{amssymb} % Equations
\usepackage{textcomp} % defines textquotesingle
% Hack from http://tex.stackexchange.com/a/47451/13684:
\AtBeginDocument{%
\def\PYZsq{\textquotesingle}% Upright quotes in Pygmentized code
}
\usepackage{upquote} % Upright quotes for verbatim code
\usepackage{eurosym} % defines \euro
\usepackage[mathletters]{ucs} % Extended unicode (utf-8) support
\usepackage[utf8x]{inputenc} % Allow utf-8 characters in the tex document
\usepackage{fancyvrb} % verbatim replacement that allows latex
\usepackage{grffile} % extends the file name processing of package graphics
% to support a larger range
% The hyperref package gives us a pdf with properly built
% internal navigation ('pdf bookmarks' for the table of contents,
% internal cross-reference links, web links for URLs, etc.)
\usepackage{hyperref}
\usepackage{longtable} % longtable support required by pandoc >1.10
\usepackage{booktabs} % table support for pandoc > 1.12.2
\usepackage[inline]{enumitem} % IRkernel/repr support (it uses the enumerate* environment)
\usepackage[normalem]{ulem} % ulem is needed to support strikethroughs (\sout)
% normalem makes italics be italics, not underlines
% Colors for the hyperref package
\definecolor{urlcolor}{rgb}{0,.145,.698}
\definecolor{linkcolor}{rgb}{.71,0.21,0.01}
\definecolor{citecolor}{rgb}{.12,.54,.11}
% ANSI colors
\definecolor{ansi-black}{HTML}{3E424D}
\definecolor{ansi-black-intense}{HTML}{282C36}
\definecolor{ansi-red}{HTML}{E75C58}
\definecolor{ansi-red-intense}{HTML}{B22B31}
\definecolor{ansi-green}{HTML}{00A250}
\definecolor{ansi-green-intense}{HTML}{007427}
\definecolor{ansi-yellow}{HTML}{DDB62B}
\definecolor{ansi-yellow-intense}{HTML}{B27D12}
\definecolor{ansi-blue}{HTML}{208FFB}
\definecolor{ansi-blue-intense}{HTML}{0065CA}
\definecolor{ansi-magenta}{HTML}{D160C4}
\definecolor{ansi-magenta-intense}{HTML}{A03196}
\definecolor{ansi-cyan}{HTML}{60C6C8}
\definecolor{ansi-cyan-intense}{HTML}{258F8F}
\definecolor{ansi-white}{HTML}{C5C1B4}
\definecolor{ansi-white-intense}{HTML}{A1A6B2}
% commands and environments needed by pandoc snippets
% extracted from the output of `pandoc -s`
\providecommand{\tightlist}{%
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
\DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
% Add ',fontsize=\small' for more characters per line
\newenvironment{Shaded}{}{}
\newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.00,0.44,0.13}{\textbf{{#1}}}}
\newcommand{\DataTypeTok}[1]{\textcolor[rgb]{0.56,0.13,0.00}{{#1}}}
\newcommand{\DecValTok}[1]{\textcolor[rgb]{0.25,0.63,0.44}{{#1}}}
\newcommand{\BaseNTok}[1]{\textcolor[rgb]{0.25,0.63,0.44}{{#1}}}
\newcommand{\FloatTok}[1]{\textcolor[rgb]{0.25,0.63,0.44}{{#1}}}
\newcommand{\CharTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
\newcommand{\StringTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
\newcommand{\CommentTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textit{{#1}}}}
\newcommand{\OtherTok}[1]{\textcolor[rgb]{0.00,0.44,0.13}{{#1}}}
\newcommand{\AlertTok}[1]{\textcolor[rgb]{1.00,0.00,0.00}{\textbf{{#1}}}}
\newcommand{\FunctionTok}[1]{\textcolor[rgb]{0.02,0.16,0.49}{{#1}}}
\newcommand{\RegionMarkerTok}[1]{{#1}}
\newcommand{\ErrorTok}[1]{\textcolor[rgb]{1.00,0.00,0.00}{\textbf{{#1}}}}
\newcommand{\NormalTok}[1]{{#1}}
% Additional commands for more recent versions of Pandoc
\newcommand{\ConstantTok}[1]{\textcolor[rgb]{0.53,0.00,0.00}{{#1}}}
\newcommand{\SpecialCharTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
\newcommand{\VerbatimStringTok}[1]{\textcolor[rgb]{0.25,0.44,0.63}{{#1}}}
\newcommand{\SpecialStringTok}[1]{\textcolor[rgb]{0.73,0.40,0.53}{{#1}}}
\newcommand{\ImportTok}[1]{{#1}}
\newcommand{\DocumentationTok}[1]{\textcolor[rgb]{0.73,0.13,0.13}{\textit{{#1}}}}
\newcommand{\AnnotationTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
\newcommand{\CommentVarTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
\newcommand{\VariableTok}[1]{\textcolor[rgb]{0.10,0.09,0.49}{{#1}}}
\newcommand{\ControlFlowTok}[1]{\textcolor[rgb]{0.00,0.44,0.13}{\textbf{{#1}}}}
\newcommand{\OperatorTok}[1]{\textcolor[rgb]{0.40,0.40,0.40}{{#1}}}
\newcommand{\BuiltInTok}[1]{{#1}}
\newcommand{\ExtensionTok}[1]{{#1}}
\newcommand{\PreprocessorTok}[1]{\textcolor[rgb]{0.74,0.48,0.00}{{#1}}}
\newcommand{\AttributeTok}[1]{\textcolor[rgb]{0.49,0.56,0.16}{{#1}}}
\newcommand{\InformationTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
\newcommand{\WarningTok}[1]{\textcolor[rgb]{0.38,0.63,0.69}{\textbf{\textit{{#1}}}}}
% Define a nice break command that doesn't care if a line doesn't already
% exist.
\def\br{\hspace*{\fill} \\* }
% Math Jax compatability definitions
\def\gt{>}
\def\lt{<}
% Document parameters
\title{Processamento}
% Pygments definitions
\makeatletter
\def\PY@reset{\let\PY@it=\relax \let\PY@bf=\relax%
\let\PY@ul=\relax \let\PY@tc=\relax%
\let\PY@bc=\relax \let\PY@ff=\relax}
\def\PY@tok#1{\csname PY@tok@#1\endcsname}
\def\PY@toks#1+{\ifx\relax#1\empty\else%
\PY@tok{#1}\expandafter\PY@toks\fi}
\def\PY@do#1{\PY@bc{\PY@tc{\PY@ul{%
\PY@it{\PY@bf{\PY@ff{#1}}}}}}}
\def\PY#1#2{\PY@reset\PY@toks#1+\relax+\PY@do{#2}}
\expandafter\def\csname PY@tok@w\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.73,0.73}{##1}}}
\expandafter\def\csname PY@tok@c\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.25,0.50,0.50}{##1}}}
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\expandafter\def\csname PY@tok@k\endcsname{\let\PY@bf=\textbf\def\PY@tc##1{\textcolor[rgb]{0.00,0.50,0.00}{##1}}}
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\expandafter\def\csname PY@tok@sd\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
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\expandafter\def\csname PY@tok@se\endcsname{\let\PY@bf=\textbf\def\PY@tc##1{\textcolor[rgb]{0.73,0.40,0.13}{##1}}}
\expandafter\def\csname PY@tok@sr\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.40,0.53}{##1}}}
\expandafter\def\csname PY@tok@ss\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.10,0.09,0.49}{##1}}}
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\expandafter\def\csname PY@tok@gi\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.00,0.63,0.00}{##1}}}
\expandafter\def\csname PY@tok@gr\endcsname{\def\PY@tc##1{\textcolor[rgb]{1.00,0.00,0.00}{##1}}}
\expandafter\def\csname PY@tok@ge\endcsname{\let\PY@it=\textit}
\expandafter\def\csname PY@tok@gs\endcsname{\let\PY@bf=\textbf}
\expandafter\def\csname PY@tok@gp\endcsname{\let\PY@bf=\textbf\def\PY@tc##1{\textcolor[rgb]{0.00,0.00,0.50}{##1}}}
\expandafter\def\csname PY@tok@go\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.53,0.53,0.53}{##1}}}
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\expandafter\def\csname PY@tok@vg\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.10,0.09,0.49}{##1}}}
\expandafter\def\csname PY@tok@vi\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.10,0.09,0.49}{##1}}}
\expandafter\def\csname PY@tok@vm\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.10,0.09,0.49}{##1}}}
\expandafter\def\csname PY@tok@sa\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@sb\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@sc\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@dl\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@s2\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@sh\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@s1\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.73,0.13,0.13}{##1}}}
\expandafter\def\csname PY@tok@mb\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
\expandafter\def\csname PY@tok@mf\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
\expandafter\def\csname PY@tok@mh\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
\expandafter\def\csname PY@tok@mi\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
\expandafter\def\csname PY@tok@il\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
\expandafter\def\csname PY@tok@mo\endcsname{\def\PY@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
\expandafter\def\csname PY@tok@ch\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.25,0.50,0.50}{##1}}}
\expandafter\def\csname PY@tok@cm\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.25,0.50,0.50}{##1}}}
\expandafter\def\csname PY@tok@cpf\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.25,0.50,0.50}{##1}}}
\expandafter\def\csname PY@tok@c1\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.25,0.50,0.50}{##1}}}
\expandafter\def\csname PY@tok@cs\endcsname{\let\PY@it=\textit\def\PY@tc##1{\textcolor[rgb]{0.25,0.50,0.50}{##1}}}
\def\PYZbs{\char`\\}
\def\PYZus{\char`\_}
\def\PYZob{\char`\{}
\def\PYZcb{\char`\}}
\def\PYZca{\char`\^}
\def\PYZam{\char`\&}
\def\PYZlt{\char`\<}
\def\PYZgt{\char`\>}
\def\PYZsh{\char`\#}
\def\PYZpc{\char`\%}
\def\PYZdl{\char`\$}
\def\PYZhy{\char`\-}
\def\PYZsq{\char`\'}
\def\PYZdq{\char`\"}
\def\PYZti{\char`\~}
% for compatibility with earlier versions
\def\PYZat{@}
\def\PYZlb{[}
\def\PYZrb{]}
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% Exact colors from NB
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\definecolor{outcolor}{rgb}{0.545, 0.0, 0.0}
% Prevent overflowing lines due to hard-to-break entities
\sloppy
% Setup hyperref package
\hypersetup{
breaklinks=true, % so long urls are correctly broken across lines
colorlinks=true,
urlcolor=urlcolor,
linkcolor=linkcolor,
citecolor=citecolor,
}
% Slightly bigger margins than the latex defaults
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\begin{document}
\maketitle
\begin{Verbatim}[commandchars=\\\{\}]
{\color{incolor}In [{\color{incolor}1}]:} \PY{k+kn}{import} \PY{n+nn}{numpy} \PY{k}{as} \PY{n+nn}{np}
\PY{k+kn}{import} \PY{n+nn}{pandas} \PY{k}{as} \PY{n+nn}{pd}
\PY{k+kn}{import} \PY{n+nn}{statsmodels}\PY{n+nn}{.}\PY{n+nn}{api} \PY{k}{as} \PY{n+nn}{sm}
\PY{k+kn}{import} \PY{n+nn}{statsmodels}\PY{n+nn}{.}\PY{n+nn}{formula}\PY{n+nn}{.}\PY{n+nn}{api} \PY{k}{as} \PY{n+nn}{smf}
\PY{k+kn}{import} \PY{n+nn}{matplotlib}
\PY{k+kn}{import} \PY{n+nn}{matplotlib}\PY{n+nn}{.}\PY{n+nn}{pyplot} \PY{k}{as} \PY{n+nn}{plt}
\PY{n}{matplotlib}\PY{o}{.}\PY{n}{style}\PY{o}{.}\PY{n}{use}\PY{p}{(}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{ggplot}\PY{l+s+s1}{\PYZsq{}}\PY{p}{)}
\PY{o}{\PYZpc{}} \PY{n}{matplotlib} \PY{n}{inline}
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
{\color{incolor}In [{\color{incolor}2}]:} \PY{c+c1}{\PYZsh{}Importando data frame da fatores de transcrição}
\PY{n}{df} \PY{o}{=} \PY{n}{pd}\PY{o}{.}\PY{n}{read\PYZus{}csv}\PY{p}{(}
\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{df.csv}\PY{l+s+s1}{\PYZsq{}}\PY{p}{,}
\PY{n}{sep}\PY{o}{=}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{,}\PY{l+s+s1}{\PYZsq{}}\PY{p}{)}
\PY{n}{df} \PY{o}{=} \PY{n}{df}\PY{o}{.}\PY{n}{drop}\PY{p}{(}\PY{p}{[}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{A}\PY{l+s+s1}{\PYZsq{}}\PY{p}{,} \PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{C}\PY{l+s+s1}{\PYZsq{}}\PY{p}{,} \PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{G}\PY{l+s+s1}{\PYZsq{}}\PY{p}{,} \PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{T}\PY{l+s+s1}{\PYZsq{}}\PY{p}{]}\PY{p}{,} \PY{n}{axis}\PY{o}{=}\PY{l+m+mi}{1}\PY{p}{)}
\PY{n+nb}{print}\PY{p}{(}\PY{n+nb}{type}\PY{p}{(}\PY{n}{df}\PY{p}{)}\PY{p}{,} \PY{n}{df}\PY{o}{.}\PY{n}{shape}\PY{p}{)}
\PY{n}{df}
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
<class 'pandas.core.frame.DataFrame'> (489, 5)
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
{\color{outcolor}Out[{\color{outcolor}2}]:} ID Name Matrix \textbackslash{}
0 >MA0020.1 Dof2 [[1. 1. 1. 0. {\ldots}
1 >MA0021.1 Dof3 [[1. 1. 1. 0. {\ldots}
2 >MA0034.1 Gam1 [[0.16 0.4 0.12 0.92 1. 0.04 0.12 0.24 0.4 {\ldots}
3 >MA0044.1 HMG-1 [[0. 0. 0. 0. {\ldots}
4 >MA0045.1 HMG-I/Y [[0.21428571 0.5 0.64285714 0.21428571 {\ldots}
5 >MA0053.1 MNB1A [[1. 1. 1. 0. 0.2]\textbackslash{}n [0. 0. 0. 0. 0.6]{\ldots}
6 >MA0054.1 myb.Ph3 [[0.27142857 0.91428571 0.9 0.05714286 {\ldots}
7 >MA0064.1 PBF [[1. 1. 1. 0. 0.0625]\textbackslash{}n [0. {\ldots}
8 >MA0082.1 squamosa [[0.36666667 0. 0.8 0.53333333 {\ldots}
9 >MA0096.1 bZIP910 [[0.42857143 0. 0. 1. {\ldots}
10 >MA0097.1 bZIP911 [[0.03030303 0.51515152 0. 0. {\ldots}
11 >MA0120.1 id1 [[0.04166667 0.125 0.04166667 0. {\ldots}
12 >MA0121.1 ARR10 [[0.93333333 0. 0.93333333 0. {\ldots}
13 >MA0123.1 abi4 [[0. 0.24489796 0. 0. {\ldots}
14 >MA0127.1 PEND [[0.71428571 0.14285714 0.02380952 0.0952381 {\ldots}
15 >MA0128.1 EmBP-1 [[0.69230769 0.07692308 1. 0. {\ldots}
16 >MA0129.1 TGA1A [[0.26666667 0.86666667 0. 0.13333333 {\ldots}
17 >MA0549.1 BZR2 [[0.23232323 0.41414141 0. 0.8989899 {\ldots}
18 >MA0551.1 HY5 [[0.321875 0.3375 0.1625 0.028125 0.46875 {\ldots}
19 >MA0552.1 PIF1 [[0.3245614 0.21929825 0.30701754 0.46491228 {\ldots}
20 >MA0553.1 SMZ [[0. 0. 0. 0. {\ldots}
21 >MA0554.1 SOC1 [[0.32432432 0.19369369 0.0731982 0.06981982 {\ldots}
22 >MA0555.1 SVP [[0.30434783 0.30434783 0.30434783 0.35869565 {\ldots}
23 >MA0556.1 AP3 [[0.3161512 0.28865979 0.16494845 0. {\ldots}
24 >MA0557.1 FHY3 [[0.19574468 0.31914894 0.03829787 0.96170213 {\ldots}
25 >MA0558.1 FLC [[0.44 0.32727273 0.34545455 0.29818182 {\ldots}
26 >MA0559.1 PI [[0.27956989 0.10215054 0.63978495 0.80286738 {\ldots}
27 >MA0560.1 PIF3 [[0.39848197 0.11005693 0.03605313 0. {\ldots}
28 >MA0561.1 PIF4 [[0. 1. 0. 0.14626866 {\ldots}
29 >MA0562.1 PIF5 [[0. 0. 1. 0. {\ldots}
.. {\ldots} {\ldots} {\ldots}
459 >MA1396.1 GATA6 [[0.10791367 0.93764988 0. 1. {\ldots}
460 >MA1397.1 At1g74840 [[0.5 0.425 0.07666667 0.065 {\ldots}
461 >MA1398.1 At5g47390 [[0.37562604 0.31719533 0.4624374 0.48414023 {\ldots}
462 >MA1399.1 At5g08520 [[0.32441472 0.48829431 0.41471572 0.34949833 {\ldots}
463 >MA1400.1 At1g19000 [[0.45409015 0.53255426 0.47078464 0.05509182 {\ldots}
464 >MA1401.1 EPR1 [[0.42211055 0.70519263 0.99497487 1. {\ldots}
465 >MA1402.1 BPC6 [[0.12765957 0.09574468 0.06914894 0.07978723 {\ldots}
466 >MA1403.1 BPC5 [[0.93137255 0.02941176 1. 0.01960784 {\ldots}
467 >MA1404.1 BPC1 [[0.15213358 0.8961039 0.0148423 0.92949907 {\ldots}
468 >MA0954.2 ATHB7 [[0.15333333 0.08833333 0.78833333 0.93333333 {\ldots}
469 >MA1000.2 ERF105 [[0.24573379 0.25426621 0.28668942 0.3225256 {\ldots}
470 >MA0586.2 SPL14 [[0.21440823 0.03945111 0. 0. {\ldots}
471 >MA1026.2 ATHB15 [[0.44915254 0.61525424 0.45423729 0.35932203 {\ldots}
472 >MA0548.2 AGL15 [[0.22203673 0.08013356 0.02671119 0.14023372 {\ldots}
473 >MA0550.2 BZR1 [[0.16156463 0.00680272 0.59693878 0. {\ldots}
474 >MA1059.2 SPL5 [[0.40802676 0.45652174 0.17056856 0.04180602 {\ldots}
475 >MA1405.1 SIZF2 [[0.16191162 0.8838 0.00263997 0.03329 {\ldots}
476 >MA1406.1 ATHB4 [[2.39200000e-02 8.22550000e-01 9.83480000e-01{\ldots}
477 >MA1407.1 bZIP14 [[0.40640641 0.43756244 0.01698302 0.01698302 {\ldots}
478 >MA1408.1 FaEOBII [[0.45035 0.21068 0.01124011 0.02313 {\ldots}
479 >MA1409.1 OsRR22 [[0.51257 0.8687 0.00486 0.97906979 {\ldots}
480 >MA1410.1 StBRC1 [[0.11497885 0.02437 0.00419 0.04402 {\ldots}
481 >MA1411.1 TSAR1 [[3.12613126e-01 3.30000000e-02 1.25451255e-01{\ldots}
482 >MA1412.1 TSAR2 [[1.76748233e-01 2.68700000e-02 1.99798002e-02{\ldots}
483 >MA1413.1 UIF1 [[4.23700000e-01 5.56050000e-01 8.60790000e-01{\ldots}
484 >MA1414.1 E2FA [[2.71536871e-01 2.44658856e-01 1.58511371e-02{\ldots}
485 >MA1415.1 REF6 [[5.37835639e-01 7.14401953e-01 9.37889883e-01{\ldots}
486 >MA1085.2 WRKY40 [[0.38034188 0.45726496 1. 0. {\ldots}
487 >MA1416.1 RAMOSA1 [[1.36283470e-01 7.51362835e-01 1.00034739e-01{\ldots}
488 >MA1417.1 O2 [[1.50147203e-01 6.32973503e-02 1.42296369e-02{\ldots}
Motifs \textbackslash{}
0 ['A', 'A', 'A', 'G', 'C', 'A']
1 ['A', 'A', 'A', 'G', 'Y', 'G']
2 ['G', 'A', 'Y', 'A', 'A', 'C', 'C', 'G', 'M', {\ldots}
3 ['S', 'T', 'Y', 'G', 'T', 'A', 'Y', 'T', 'Y']
4 ['C', 'A', 'A', 'C', 'A', 'A', 'A', 'T', 'G', {\ldots}
5 ['A', 'A', 'A', 'G', 'C']
6 ['T', 'A', 'A', 'C', 'C', 'G', 'T', 'T', 'W']
7 ['A', 'A', 'A', 'G', 'Y']
8 ['M', 'C', 'A', 'W', 'A', 'W', 'A', 'T', 'R', {\ldots}
9 ['M', 'T', 'G', 'A', 'C', 'G', 'T']
10 ['G', 'R', 'T', 'G', 'A', 'C', 'G', 'T', 'G', {\ldots}
11 ['T', 'T', 'K', 'Y', 'C', 'C', 'Y', 'T', 'W', {\ldots}
12 ['A', 'G', 'A', 'T', 'Y', 'Y', 'K', 'C']
13 ['C', 'G', 'S', 'Y', 'G', 'C', 'C', 'C', 'C', {\ldots}
14 ['A', 'C', 'T', 'T', 'C', 'T', 'T', 'A', 'T', {\ldots}
15 ['W', 'S', 'A', 'C', 'G', 'T', 'G', 'G']
16 ['T', 'A', 'C', 'G', 'T', 'C', 'A']
17 ['C', 'R', 'C', 'A', 'C', 'G', 'T', 'G', 'K', {\ldots}
18 ['A', 'A', 'T', 'G', 'M', 'C', 'A', 'C', 'G', {\ldots}
19 ['R', 'K', 'A', 'R', 'N', 'G', 'W', 'C', 'A', {\ldots}
20 ['C', 'C', 'T', 'C', 'G', 'T', 'A', 'C']
21 ['W', 'T', 'T', 'T', 'T', 'C', 'C', 'W', 'T', {\ldots}
22 ['A', 'W', 'W', 'W', 'C', 'C', 'A', 'A', 'A', {\ldots}
23 ['W', 'T', 'C', 'C', 'A', 'A', 'A', 'A', 'R', {\ldots}
24 ['C', 'W', 'C', 'A', 'C', 'G', 'C', 'G', 'C', {\ldots}
25 ['A', 'A', 'W', 'T', 'T', 'C', 'C', 'A', 'A', {\ldots}
26 ['C', 'C', 'A', 'A', 'A', 'A', 'R', 'A', 'R', {\ldots}
27 ['A', 'G', 'C', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
28 ['C', 'A', 'C', 'G', 'T', 'G', 'G', 'C']
29 ['T', 'C', 'A', 'C', 'R', 'T', 'G', 'S']
.. {\ldots}
459 ['Y', 'A', 'G', 'A', 'T', 'C', 'T', 'A', 'G', {\ldots}
460 ['W', 'W', 'T', 'G', 'G', 'A', 'T', 'A', 'A', {\ldots}
461 ['W', 'W', 'W', 'A', 'Y', 'C', 'T', 'T', 'A', {\ldots}
462 ['A', 'W', 'W', 'R', 'W', 'R', 'G', 'A', 'T', {\ldots}
463 ['W', 'W', 'A', 'T', 'G', 'G', 'A', 'T', 'A', {\ldots}
464 ['A', 'A', 'A', 'A', 'A', 'T', 'A', 'T', 'C', {\ldots}
465 ['C', 'T', 'C', 'T', 'C', 'T', 'C', 'T', 'C', {\ldots}
466 ['A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', {\ldots}
467 ['G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', {\ldots}
468 ['T', 'C', 'A', 'A', 'T', 'G', 'A', 'T', 'T', {\ldots}
469 ['G', 'Y', 'G', 'R', 'Y', 'G', 'G', 'C', 'G', {\ldots}
470 ['T', 'C', 'C', 'G', 'T', 'A', 'C', 'A', 'A', {\ldots}
471 ['A', 'A', 'W', 'W', 'R', 'T', 'A', 'A', 'T', {\ldots}
472 ['C', 'T', 'T', 'T', 'C', 'C', 'W', 'T', 'T', {\ldots}
473 ['C', 'C', 'R', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
474 ['A', 'A', 'T', 'T', 'G', 'T', 'A', 'C', 'G', {\ldots}
475 ['G', 'A', 'C', 'T', 'G', 'A', 'C', 'A', 'G', {\ldots}
476 ['Y', 'A', 'A', 'T', 'S', 'A', 'T', 'T', 'G', {\ldots}
477 ['A', 'A', 'T', 'G', 'A', 'C', 'G', 'T', 'A', {\ldots}
478 ['A', 'G', 'T', 'T', 'A', 'G', 'G', 'T', 'A', {\ldots}
479 ['A', 'A', 'G', 'A', 'T', 'A', 'C', 'G', 'S', {\ldots}
480 ['G', 'G', 'G', 'G', 'S', 'C', 'C', 'M', 'C', {\ldots}
481 ['A', 'G', 'C', 'A', 'C', 'G', 'T', 'G', 'C', {\ldots}
482 ['T', 'G', 'C', 'A', 'C', 'G', 'T', 'G', 'C', {\ldots}
483 ['A', 'A', 'A', 'G', 'A', 'T', 'T', 'C', 'C', {\ldots}
484 ['T', 'G', 'G', 'C', 'G', 'C', 'C', 'A', 'A', {\ldots}
485 ['R', 'A', 'A', 'A', 'C', 'A', 'G', 'A', 'G', {\ldots}
486 ['A', 'A', 'A', 'G', 'T', 'C', 'A', 'A', 'A', {\ldots}
487 ['G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', {\ldots}
488 ['G', 'T', 'G', 'C', 'C', 'A', 'C', 'G', 'T', {\ldots}
ReverseComplement
0 ['T', 'G', 'C', 'T', 'T', 'T']
1 ['C', 'R', 'C', 'T', 'T', 'T']
2 ['G', 'K', 'C', 'G', 'G', 'T', 'T', 'R', 'T', {\ldots}
3 ['R', 'A', 'R', 'T', 'A', 'C', 'R', 'A', 'S']
4 ['R', 'T', 'K', 'T', 'T', 'K', 'C', 'C', 'A', {\ldots}
5 ['G', 'C', 'T', 'T', 'T']
6 ['W', 'A', 'A', 'C', 'G', 'G', 'T', 'T', 'A']
7 ['R', 'C', 'T', 'T', 'T']
8 ['A', 'T', 'T', 'W', 'C', 'Y', 'A', 'T', 'W', {\ldots}
9 ['A', 'C', 'G', 'T', 'C', 'A', 'K']
10 ['G', 'K', 'K', 'C', 'A', 'C', 'G', 'T', 'C', {\ldots}
11 ['C', 'G', 'A', 'W', 'A', 'R', 'G', 'G', 'R', {\ldots}
12 ['G', 'K', 'R', 'R', 'A', 'T', 'C', 'T']
13 ['G', 'G', 'G', 'G', 'G', 'C', 'R', 'S', 'C', {\ldots}
14 ['K', 'A', 'T', 'A', 'A', 'G', 'A', 'A', 'G', {\ldots}
15 ['C', 'C', 'A', 'C', 'G', 'T', 'S', 'W']
16 ['T', 'G', 'A', 'C', 'G', 'T', 'A']
17 ['Y', 'S', 'K', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
18 ['A', 'A', 'T', 'G', 'K', 'C', 'A', 'C', 'G', {\ldots}
19 ['C', 'C', 'A', 'C', 'G', 'T', 'G', 'W', 'C', {\ldots}
20 ['G', 'T', 'A', 'C', 'G', 'A', 'G', 'G']
21 ['C', 'C', 'A', 'A', 'A', 'A', 'A', 'W', 'G', {\ldots}
22 ['W', 'T', 'Y', 'T', 'T', 'T', 'C', 'C', 'W', {\ldots}
23 ['T', 'T', 'T', 'C', 'Y', 'W', 'Y', 'T', 'T', {\ldots}
24 ['T', 'N', 'A', 'G', 'C', 'G', 'C', 'G', 'T', {\ldots}
25 ['W', 'W', 'C', 'T', 'T', 'T', 'C', 'Y', 'A', {\ldots}
26 ['Y', 'T', 'T', 'T', 'C', 'Y', 'T', 'Y', 'T', {\ldots}
27 ['T', 'C', 'A', 'C', 'G', 'T', 'G', 'G', 'C', {\ldots}
28 ['G', 'C', 'C', 'A', 'C', 'G', 'T', 'G']
29 ['S', 'C', 'A', 'Y', 'G', 'T', 'G', 'A']
.. {\ldots}
459 ['A', 'G', 'A', 'T', 'C', 'T', 'A', 'G', 'A', {\ldots}
460 ['Y', 'C', 'T', 'T', 'A', 'T', 'C', 'C', 'A', {\ldots}
461 ['W', 'W', 'T', 'G', 'G', 'A', 'T', 'A', 'A', {\ldots}
462 ['Y', 'C', 'T', 'T', 'A', 'T', 'C', 'Y', 'W', {\ldots}
463 ['A', 'A', 'C', 'C', 'T', 'T', 'A', 'T', 'C', {\ldots}
464 ['T', 'A', 'A', 'G', 'A', 'T', 'A', 'T', 'T', {\ldots}
465 ['G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', {\ldots}
466 ['C', 'T', 'C', 'T', 'C', 'T', 'C', 'T', 'C', {\ldots}
467 ['T', 'C', 'T', 'C', 'T', 'C', 'T', 'C', 'T', {\ldots}
468 ['A', 'A', 'Y', 'C', 'A', 'A', 'T', 'C', 'A', {\ldots}
469 ['C', 'K', 'C', 'C', 'G', 'C', 'C', 'G', 'C', {\ldots}
470 ['A', 'A', 'T', 'T', 'G', 'T', 'A', 'C', 'G', {\ldots}
471 ['R', 'T', 'K', 'A', 'T', 'C', 'A', 'T', 'T', {\ldots}
472 ['A', 'C', 'T', 'T', 'W', 'C', 'C', 'A', 'A', {\ldots}
473 ['A', 'A', 'A', 'A', 'A', 'N', 'A', 'N', 'T', {\ldots}
474 ['G', 'T', 'C', 'C', 'G', 'T', 'A', 'C', 'A', {\ldots}
475 ['A', 'C', 'T', 'G', 'T', 'C', 'A', 'G', 'T', {\ldots}
476 ['S', 'C', 'A', 'A', 'T', 'S', 'A', 'T', 'T', {\ldots}
477 ['D', 'T', 'A', 'C', 'G', 'T', 'C', 'A', 'T', {\ldots}
478 ['N', 'T', 'A', 'C', 'C', 'T', 'A', 'A', 'C', {\ldots}
479 ['A', 'S', 'C', 'G', 'T', 'A', 'T', 'C', 'T', {\ldots}
480 ['G', 'G', 'K', 'G', 'G', 'S', 'C', 'C', 'C', {\ldots}
481 ['Y', 'G', 'C', 'A', 'C', 'G', 'T', 'G', 'C', {\ldots}
482 ['C', 'G', 'C', 'A', 'C', 'G', 'T', 'G', 'C', {\ldots}
483 ['Y', 'G', 'G', 'A', 'A', 'T', 'C', 'T', 'T', {\ldots}
484 ['T', 'T', 'T', 'G', 'G', 'C', 'G', 'C', 'C', {\ldots}
485 ['T', 'N', 'C', 'T', 'C', 'T', 'G', 'T', 'T', {\ldots}
486 ['T', 'T', 'T', 'T', 'G', 'A', 'C', 'T', 'T', {\ldots}
487 ['T', 'C', 'T', 'C', 'T', 'C', 'T', 'C', 'T', {\ldots}
488 ['G', 'A', 'T', 'G', 'A', 'C', 'G', 'T', 'G', {\ldots}
[489 rows x 5 columns]
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
{\color{incolor}In [{\color{incolor}3}]:} \PY{c+c1}{\PYZsh{}Importando data frame da fatores de transcrição}
\PY{n}{genoma} \PY{o}{=} \PY{n}{pd}\PY{o}{.}\PY{n}{read\PYZus{}csv}\PY{p}{(}
\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{Genome Log.csv}\PY{l+s+s1}{\PYZsq{}}\PY{p}{,}
\PY{n}{sep}\PY{o}{=}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{,}\PY{l+s+s1}{\PYZsq{}}\PY{p}{)}
\PY{n}{genoma}
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
{\color{outcolor}Out[{\color{outcolor}3}]:} Promoter ID Name \textbackslash{}
0 NaN >MA0020.1 Dof2
1 NaN >MA0021.1 Dof3
2 NaN >MA0034.1 Gam1
3 NaN >MA0044.1 HMG-1
4 NaN >MA0045.1 HMG-I/Y
5 NaN >MA0053.1 MNB1A
6 NaN >MA0054.1 myb.Ph3
7 NaN >MA0064.1 PBF
8 NaN >MA0082.1 squamosa
9 NaN >MA0096.1 bZIP910
10 NaN >MA0097.1 bZIP911
11 NaN >MA0120.1 id1
12 NaN >MA0121.1 ARR10
13 NaN >MA0123.1 abi4
14 NaN >MA0127.1 PEND
15 NaN >MA0128.1 EmBP-1
16 NaN >MA0129.1 TGA1A
17 NaN >MA0549.1 BZR2
18 NaN >MA0551.1 HY5
19 NaN >MA0552.1 PIF1
20 NaN >MA0553.1 SMZ
21 NaN >MA0554.1 SOC1
22 NaN >MA0555.1 SVP
23 NaN >MA0556.1 AP3
24 NaN >MA0557.1 FHY3
25 NaN >MA0558.1 FLC
26 NaN >MA0559.1 PI
27 NaN >MA0560.1 PIF3
28 NaN >MA0561.1 PIF4
29 NaN >MA0562.1 PIF5
{\ldots} {\ldots} {\ldots} {\ldots}
757963 NaN >MA0989.1 PHYPADRAFT\_153324
757964 NaN >MA1027.1 KAN1
757965 NaN >MA1042.1 MYB59
757966 NaN >MA1071.1 DOF5.3
757967 NaN >MA1201.1 AGL42
757968 NaN >MA1206.1 ARF2
757969 NaN >MA1210.1 HAT22
757970 NaN >MA0021.1 Dof3
757971 NaN >MA0053.1 MNB1A
757972 NaN >MA0064.1 PBF
757973 NaN >MA0121.1 ARR10
757974 NaN >MA0562.1 PIF5
757975 NaN >MA0932.1 AHL12
757976 NaN >MA0933.1 AHL20
757977 NaN >MA0934.1 AHL25
757978 NaN >MA0951.1 ATHB-16
757979 NaN >MA0981.1 DOF1.8
757980 NaN >MA0982.1 DOF2.4
757981 NaN >MA0983.1 DOF5.6
757982 NaN >MA0987.1 PHYPADRAFT\_140773
757983 NaN >MA0989.1 PHYPADRAFT\_153324
757984 NaN >MA1027.1 KAN1
757985 NaN >MA1030.1 P0510F09.23
757986 NaN >MA1031.1 OJ1581\_H09.2
757987 NaN >MA1071.1 DOF5.3
757988 NaN >MA1073.1 TRB2
757989 NaN >MA1093.1 WRKY75
757990 NaN >MA1202.1 AGL55
757991 NaN >MA1275.1 AT1G47655
757992 NaN >MA1324.1 GATA20
Motifs \textbackslash{}
0 ['A', 'A', 'A', 'G', 'C', 'A']
1 ['A', 'A', 'A', 'G', 'Y', 'G']
2 ['G', 'A', 'Y', 'A', 'A', 'C', 'C', 'G', 'M', {\ldots}
3 ['S', 'T', 'Y', 'G', 'T', 'A', 'Y', 'T', 'Y']
4 ['C', 'A', 'A', 'C', 'A', 'A', 'A', 'T', 'G', {\ldots}
5 ['A', 'A', 'A', 'G', 'C']
6 ['T', 'A', 'A', 'C', 'C', 'G', 'T', 'T', 'W']
7 ['A', 'A', 'A', 'G', 'Y']
8 ['M', 'C', 'A', 'W', 'A', 'W', 'A', 'T', 'R', {\ldots}
9 ['M', 'T', 'G', 'A', 'C', 'G', 'T']
10 ['G', 'R', 'T', 'G', 'A', 'C', 'G', 'T', 'G', {\ldots}
11 ['T', 'T', 'K', 'Y', 'C', 'C', 'Y', 'T', 'W', {\ldots}
12 ['A', 'G', 'A', 'T', 'Y', 'Y', 'K', 'C']
13 ['C', 'G', 'S', 'Y', 'G', 'C', 'C', 'C', 'C', {\ldots}
14 ['A', 'C', 'T', 'T', 'C', 'T', 'T', 'A', 'T', {\ldots}
15 ['W', 'S', 'A', 'C', 'G', 'T', 'G', 'G']
16 ['T', 'A', 'C', 'G', 'T', 'C', 'A']
17 ['C', 'R', 'C', 'A', 'C', 'G', 'T', 'G', 'K', {\ldots}
18 ['A', 'A', 'T', 'G', 'M', 'C', 'A', 'C', 'G', {\ldots}
19 ['R', 'K', 'A', 'R', 'N', 'G', 'W', 'C', 'A', {\ldots}
20 ['C', 'C', 'T', 'C', 'G', 'T', 'A', 'C']
21 ['W', 'T', 'T', 'T', 'T', 'C', 'C', 'W', 'T', {\ldots}
22 ['A', 'W', 'W', 'W', 'C', 'C', 'A', 'A', 'A', {\ldots}
23 ['W', 'T', 'C', 'C', 'A', 'A', 'A', 'A', 'R', {\ldots}
24 ['C', 'W', 'C', 'A', 'C', 'G', 'C', 'G', 'C', {\ldots}
25 ['A', 'A', 'W', 'T', 'T', 'C', 'C', 'A', 'A', {\ldots}
26 ['C', 'C', 'A', 'A', 'A', 'A', 'R', 'A', 'R', {\ldots}
27 ['A', 'G', 'C', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
28 ['C', 'A', 'C', 'G', 'T', 'G', 'G', 'C']
29 ['T', 'C', 'A', 'C', 'R', 'T', 'G', 'S']
{\ldots} {\ldots}
757963 ['N', 'A', 'W', 'A', 'A', 'A', 'G', 'T', 'N']
757964 ['A', 'N', 'W', 'T', 'A', 'T', 'T', 'C']
757965 ['R', 'T', 'T', 'A', 'G', 'G', 'T', 'A']
757966 ['N', 'A', 'W', 'A', 'A', 'M', 'G']
757967 ['C', 'A', 'T', 'C', 'A', 'T', 'C']
757968 ['W', 'K', 'S', 'M', 'G', 'A', 'C', 'A', 'A', {\ldots}
757969 ['A', 'Y', 'Y', 'A', 'A', 'T', 'C', 'A', 'T', {\ldots}
757970 ['A', 'A', 'A', 'G', 'Y', 'G']
757971 ['A', 'A', 'A', 'G', 'C']
757972 ['A', 'A', 'A', 'G', 'Y']
757973 ['A', 'G', 'A', 'T', 'Y', 'Y', 'K', 'C']
757974 ['T', 'C', 'A', 'C', 'R', 'T', 'G', 'S']
757975 ['A', 'A', 'W', 'W', 'W', 'W', 'T', 'T']
757976 ['A', 'A', 'T', 'T', 'A', 'A', 'W', 'T']
757977 ['A', 'W', 'T', 'T', 'A', 'A', 'W', 'T']
757978 ['T', 'A', 'A', 'T', 'M', 'A', 'T', 'T']
757979 ['N', 'A', 'W', 'A', 'A', 'A', 'G', 'T', 'N', {\ldots}
757980 ['A', 'W', 'A', 'A', 'A', 'G', 'T']
757981 ['N', 'A', 'W', 'A', 'A', 'M', 'G', 'T']
757982 ['N', 'A', 'W', 'A', 'A', 'A', 'G', 'T', 'N', {\ldots}
757983 ['N', 'A', 'W', 'A', 'A', 'A', 'G', 'T', 'N']
757984 ['A', 'N', 'W', 'T', 'A', 'T', 'T', 'C']
757985 ['W', 'R', 'M', 'C', 'C', 'T', 'A', 'R', 'N', {\ldots}
757986 ['G', 'K', 'G', 'G', 'G', 'C', 'C', 'C', 'M', {\ldots}
757987 ['N', 'A', 'W', 'A', 'A', 'M', 'G']
757988 ['W', 'R', 'M', 'C', 'C', 'T', 'A', 'R']
757989 ['A', 'R', 'G', 'T', 'C', 'A', 'A', 'C']
757990 ['T', 'C', 'A', 'C', 'C', 'A']
757991 ['N', 'G', 'A', 'W', 'A', 'A', 'A', 'G', 'T', {\ldots}
757992 ['A', 'T', 'C', 'S', 'G', 'A', 'T', 'C']
ReverseComplement \textbackslash{}
0 ['T', 'G', 'C', 'T', 'T', 'T']
1 ['C', 'R', 'C', 'T', 'T', 'T']
2 ['G', 'K', 'C', 'G', 'G', 'T', 'T', 'R', 'T', {\ldots}
3 ['R', 'A', 'R', 'T', 'A', 'C', 'R', 'A', 'S']
4 ['R', 'T', 'K', 'T', 'T', 'K', 'C', 'C', 'A', {\ldots}
5 ['G', 'C', 'T', 'T', 'T']
6 ['W', 'A', 'A', 'C', 'G', 'G', 'T', 'T', 'A']
7 ['R', 'C', 'T', 'T', 'T']
8 ['A', 'T', 'T', 'W', 'C', 'Y', 'A', 'T', 'W', {\ldots}
9 ['A', 'C', 'G', 'T', 'C', 'A', 'K']
10 ['G', 'K', 'K', 'C', 'A', 'C', 'G', 'T', 'C', {\ldots}
11 ['C', 'G', 'A', 'W', 'A', 'R', 'G', 'G', 'R', {\ldots}
12 ['G', 'K', 'R', 'R', 'A', 'T', 'C', 'T']
13 ['G', 'G', 'G', 'G', 'G', 'C', 'R', 'S', 'C', {\ldots}
14 ['K', 'A', 'T', 'A', 'A', 'G', 'A', 'A', 'G', {\ldots}
15 ['C', 'C', 'A', 'C', 'G', 'T', 'S', 'W']
16 ['T', 'G', 'A', 'C', 'G', 'T', 'A']
17 ['Y', 'S', 'K', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
18 ['A', 'A', 'T', 'G', 'K', 'C', 'A', 'C', 'G', {\ldots}
19 ['C', 'C', 'A', 'C', 'G', 'T', 'G', 'W', 'C', {\ldots}
20 ['G', 'T', 'A', 'C', 'G', 'A', 'G', 'G']
21 ['C', 'C', 'A', 'A', 'A', 'A', 'A', 'W', 'G', {\ldots}
22 ['W', 'T', 'Y', 'T', 'T', 'T', 'C', 'C', 'W', {\ldots}
23 ['T', 'T', 'T', 'C', 'Y', 'W', 'Y', 'T', 'T', {\ldots}
24 ['T', 'N', 'A', 'G', 'C', 'G', 'C', 'G', 'T', {\ldots}
25 ['W', 'W', 'C', 'T', 'T', 'T', 'C', 'Y', 'A', {\ldots}
26 ['Y', 'T', 'T', 'T', 'C', 'Y', 'T', 'Y', 'T', {\ldots}
27 ['T', 'C', 'A', 'C', 'G', 'T', 'G', 'G', 'C', {\ldots}
28 ['G', 'C', 'C', 'A', 'C', 'G', 'T', 'G']
29 ['S', 'C', 'A', 'Y', 'G', 'T', 'G', 'A']
{\ldots} {\ldots}
757963 ['N', 'A', 'C', 'T', 'T', 'T', 'W', 'T', 'N']
757964 ['G', 'A', 'A', 'T', 'A', 'W', 'N', 'T']
757965 ['T', 'A', 'C', 'C', 'T', 'A', 'A', 'Y']
757966 ['C', 'K', 'T', 'T', 'W', 'T', 'N']
757967 ['G', 'A', 'T', 'G', 'A', 'T', 'G']
757968 ['Y', 'T', 'T', 'G', 'T', 'C', 'K', 'S', 'K', {\ldots}
757969 ['A', 'A', 'T', 'G', 'A', 'T', 'T', 'R', 'R', {\ldots}
757970 ['C', 'R', 'C', 'T', 'T', 'T']
757971 ['G', 'C', 'T', 'T', 'T']
757972 ['R', 'C', 'T', 'T', 'T']
757973 ['G', 'K', 'R', 'R', 'A', 'T', 'C', 'T']
757974 ['S', 'C', 'A', 'Y', 'G', 'T', 'G', 'A']
757975 ['A', 'A', 'W', 'W', 'W', 'W', 'T', 'T']
757976 ['A', 'W', 'T', 'T', 'A', 'A', 'T', 'T']
757977 ['A', 'W', 'T', 'T', 'A', 'A', 'W', 'T']
757978 ['A', 'A', 'T', 'K', 'A', 'T', 'T', 'A']
757979 ['N', 'N', 'A', 'C', 'T', 'T', 'T', 'W', 'T', {\ldots}
757980 ['A', 'C', 'T', 'T', 'T', 'W', 'T']
757981 ['A', 'C', 'K', 'T', 'T', 'W', 'T', 'N']
757982 ['N', 'N', 'A', 'C', 'T', 'T', 'T', 'W', 'T', {\ldots}
757983 ['N', 'A', 'C', 'T', 'T', 'T', 'W', 'T', 'N']
757984 ['G', 'A', 'A', 'T', 'A', 'W', 'N', 'T']
757985 ['N', 'N', 'Y', 'T', 'A', 'G', 'G', 'K', 'Y', {\ldots}
757986 ['G', 'K', 'G', 'G', 'G', 'C', 'C', 'C', 'K', {\ldots}
757987 ['C', 'K', 'T', 'T', 'W', 'T', 'N']
757988 ['Y', 'T', 'A', 'G', 'G', 'K', 'Y', 'W']
757989 ['G', 'T', 'T', 'G', 'A', 'C', 'Y', 'T']
757990 ['T', 'G', 'G', 'T', 'G', 'A']
757991 ['T', 'Y', 'A', 'C', 'T', 'T', 'T', 'W', 'T', {\ldots}
757992 ['G', 'A', 'T', 'C', 'S', 'G', 'A', 'T']
5l3l \textbackslash{}
0 0
1 0
2 0
3 0
4 0
5 0
6 0
7 0
8 0
9 0
10 0
11 0
12 0
13 0
14 0
15 0
16 0
17 0
18 0
19 0
20 0
21 0
22 0
23 0
24 0
25 0
26 0
27 0
28 0
29 0
{\ldots} {\ldots}
757963 [289]
757964 [350]
757965 []
757966 [214, 245, 289, 1241, 1752]
757967 []
757968 []
757969 [656]
757970 [435, 1972]
757971 [1972]
757972 [160, 435, 713, 859, 1289, 1393, 1597, 1972]
757973 [1328, 1499]
757974 [1334]
757975 [83, 126, 127, 178, 179, 180, 204, 246, 650, 6{\ldots}
757976 [1514, 1518]
757977 [338, 613, 1510, 1514, 1518]
757978 []
757979 [157, 710, 856, 1390]
757980 [158, 711, 857, 1391]
757981 [157, 710, 856, 1390, 1737]
757982 [157, 710, 856, 1390]
757983 [157, 710, 856, 1390]
757984 []
757985 [1207, 1847]
757986 []
757987 [157, 303, 673, 710, 856, 885, 1015, 1055, 115{\ldots}
757988 [1207, 1847]
757989 []
757990 [1364]
757991 [855]
757992 [478]
3l5l
0 0
1 0
2 0
3 0
4 0
5 0
6 0
7 0
8 0
9 0
10 0
11 0
12 0
13 0
14 0
15 0
16 0
17 0
18 0
19 0
20 0
21 0
22 0
23 0
24 0
25 0
26 0
27 0
28 0
29 0
{\ldots} {\ldots}
757963 []
757964 [1609, 1785]
757965 [1581]
757966 []
757967 [1337, 1340, 1713]
757968 [581]
757969 []
757970 [413]
757971 [153, 1785]
757972 [153, 349, 414, 780, 1308, 1624, 1785, 1870]
757973 []
757974 []
757975 [83, 126, 127, 178, 179, 180, 204, 246, 650, 6{\ldots}
757976 [613, 1510, 1514]
757977 [338, 613, 1510, 1514, 1518]
757978 [165]
757979 []
757980 []
757981 []
757982 []
757983 []
757984 [1407]
757985 []
757986 [1929]
757987 []
757988 []
757989 [1681]
757990 []
757991 []
757992 []
[757993 rows x 7 columns]
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
{\color{incolor}In [{\color{incolor}4}]:} \PY{n}{df}\PY{p}{[}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{Genome}\PY{l+s+s1}{\PYZsq{}}\PY{p}{]} \PY{o}{=} \PY{l+m+mi}{0}
\PY{n}{i} \PY{o}{=} \PY{n}{genoma}\PY{o}{.}\PY{n}{groupby}\PY{p}{(}\PY{p}{[}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{ID}\PY{l+s+s1}{\PYZsq{}}\PY{p}{]}\PY{p}{)}\PY{o}{.}\PY{n}{count}\PY{p}{(}\PY{p}{)}
\PY{n}{df}\PY{p}{[}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{Genome}\PY{l+s+s1}{\PYZsq{}}\PY{p}{]} \PY{o}{=} \PY{n}{i}\PY{p}{[}\PY{l+s+s1}{\PYZsq{}}\PY{l+s+s1}{5l3l}\PY{l+s+s1}{\PYZsq{}}\PY{p}{]}\PY{o}{.}\PY{n}{values}\PY{o}{.}\PY{n}{copy}\PY{p}{(}\PY{p}{)}
\PY{n}{df}
\end{Verbatim}
\begin{Verbatim}[commandchars=\\\{\}]
{\color{outcolor}Out[{\color{outcolor}4}]:} ID Name Matrix \textbackslash{}
0 >MA0020.1 Dof2 [[1. 1. 1. 0. {\ldots}
1 >MA0021.1 Dof3 [[1. 1. 1. 0. {\ldots}
2 >MA0034.1 Gam1 [[0.16 0.4 0.12 0.92 1. 0.04 0.12 0.24 0.4 {\ldots}
3 >MA0044.1 HMG-1 [[0. 0. 0. 0. {\ldots}
4 >MA0045.1 HMG-I/Y [[0.21428571 0.5 0.64285714 0.21428571 {\ldots}
5 >MA0053.1 MNB1A [[1. 1. 1. 0. 0.2]\textbackslash{}n [0. 0. 0. 0. 0.6]{\ldots}
6 >MA0054.1 myb.Ph3 [[0.27142857 0.91428571 0.9 0.05714286 {\ldots}
7 >MA0064.1 PBF [[1. 1. 1. 0. 0.0625]\textbackslash{}n [0. {\ldots}
8 >MA0082.1 squamosa [[0.36666667 0. 0.8 0.53333333 {\ldots}
9 >MA0096.1 bZIP910 [[0.42857143 0. 0. 1. {\ldots}
10 >MA0097.1 bZIP911 [[0.03030303 0.51515152 0. 0. {\ldots}
11 >MA0120.1 id1 [[0.04166667 0.125 0.04166667 0. {\ldots}
12 >MA0121.1 ARR10 [[0.93333333 0. 0.93333333 0. {\ldots}
13 >MA0123.1 abi4 [[0. 0.24489796 0. 0. {\ldots}
14 >MA0127.1 PEND [[0.71428571 0.14285714 0.02380952 0.0952381 {\ldots}
15 >MA0128.1 EmBP-1 [[0.69230769 0.07692308 1. 0. {\ldots}
16 >MA0129.1 TGA1A [[0.26666667 0.86666667 0. 0.13333333 {\ldots}
17 >MA0549.1 BZR2 [[0.23232323 0.41414141 0. 0.8989899 {\ldots}
18 >MA0551.1 HY5 [[0.321875 0.3375 0.1625 0.028125 0.46875 {\ldots}
19 >MA0552.1 PIF1 [[0.3245614 0.21929825 0.30701754 0.46491228 {\ldots}
20 >MA0553.1 SMZ [[0. 0. 0. 0. {\ldots}
21 >MA0554.1 SOC1 [[0.32432432 0.19369369 0.0731982 0.06981982 {\ldots}
22 >MA0555.1 SVP [[0.30434783 0.30434783 0.30434783 0.35869565 {\ldots}
23 >MA0556.1 AP3 [[0.3161512 0.28865979 0.16494845 0. {\ldots}
24 >MA0557.1 FHY3 [[0.19574468 0.31914894 0.03829787 0.96170213 {\ldots}
25 >MA0558.1 FLC [[0.44 0.32727273 0.34545455 0.29818182 {\ldots}
26 >MA0559.1 PI [[0.27956989 0.10215054 0.63978495 0.80286738 {\ldots}
27 >MA0560.1 PIF3 [[0.39848197 0.11005693 0.03605313 0. {\ldots}
28 >MA0561.1 PIF4 [[0. 1. 0. 0.14626866 {\ldots}
29 >MA0562.1 PIF5 [[0. 0. 1. 0. {\ldots}
.. {\ldots} {\ldots} {\ldots}
459 >MA1396.1 GATA6 [[0.10791367 0.93764988 0. 1. {\ldots}
460 >MA1397.1 At1g74840 [[0.5 0.425 0.07666667 0.065 {\ldots}
461 >MA1398.1 At5g47390 [[0.37562604 0.31719533 0.4624374 0.48414023 {\ldots}
462 >MA1399.1 At5g08520 [[0.32441472 0.48829431 0.41471572 0.34949833 {\ldots}
463 >MA1400.1 At1g19000 [[0.45409015 0.53255426 0.47078464 0.05509182 {\ldots}
464 >MA1401.1 EPR1 [[0.42211055 0.70519263 0.99497487 1. {\ldots}
465 >MA1402.1 BPC6 [[0.12765957 0.09574468 0.06914894 0.07978723 {\ldots}
466 >MA1403.1 BPC5 [[0.93137255 0.02941176 1. 0.01960784 {\ldots}
467 >MA1404.1 BPC1 [[0.15213358 0.8961039 0.0148423 0.92949907 {\ldots}
468 >MA0954.2 ATHB7 [[0.15333333 0.08833333 0.78833333 0.93333333 {\ldots}
469 >MA1000.2 ERF105 [[0.24573379 0.25426621 0.28668942 0.3225256 {\ldots}
470 >MA0586.2 SPL14 [[0.21440823 0.03945111 0. 0. {\ldots}
471 >MA1026.2 ATHB15 [[0.44915254 0.61525424 0.45423729 0.35932203 {\ldots}
472 >MA0548.2 AGL15 [[0.22203673 0.08013356 0.02671119 0.14023372 {\ldots}
473 >MA0550.2 BZR1 [[0.16156463 0.00680272 0.59693878 0. {\ldots}
474 >MA1059.2 SPL5 [[0.40802676 0.45652174 0.17056856 0.04180602 {\ldots}
475 >MA1405.1 SIZF2 [[0.16191162 0.8838 0.00263997 0.03329 {\ldots}
476 >MA1406.1 ATHB4 [[2.39200000e-02 8.22550000e-01 9.83480000e-01{\ldots}
477 >MA1407.1 bZIP14 [[0.40640641 0.43756244 0.01698302 0.01698302 {\ldots}
478 >MA1408.1 FaEOBII [[0.45035 0.21068 0.01124011 0.02313 {\ldots}
479 >MA1409.1 OsRR22 [[0.51257 0.8687 0.00486 0.97906979 {\ldots}
480 >MA1410.1 StBRC1 [[0.11497885 0.02437 0.00419 0.04402 {\ldots}
481 >MA1411.1 TSAR1 [[3.12613126e-01 3.30000000e-02 1.25451255e-01{\ldots}
482 >MA1412.1 TSAR2 [[1.76748233e-01 2.68700000e-02 1.99798002e-02{\ldots}
483 >MA1413.1 UIF1 [[4.23700000e-01 5.56050000e-01 8.60790000e-01{\ldots}
484 >MA1414.1 E2FA [[2.71536871e-01 2.44658856e-01 1.58511371e-02{\ldots}
485 >MA1415.1 REF6 [[5.37835639e-01 7.14401953e-01 9.37889883e-01{\ldots}
486 >MA1085.2 WRKY40 [[0.38034188 0.45726496 1. 0. {\ldots}
487 >MA1416.1 RAMOSA1 [[1.36283470e-01 7.51362835e-01 1.00034739e-01{\ldots}
488 >MA1417.1 O2 [[1.50147203e-01 6.32973503e-02 1.42296369e-02{\ldots}
Motifs \textbackslash{}
0 ['A', 'A', 'A', 'G', 'C', 'A']
1 ['A', 'A', 'A', 'G', 'Y', 'G']
2 ['G', 'A', 'Y', 'A', 'A', 'C', 'C', 'G', 'M', {\ldots}
3 ['S', 'T', 'Y', 'G', 'T', 'A', 'Y', 'T', 'Y']
4 ['C', 'A', 'A', 'C', 'A', 'A', 'A', 'T', 'G', {\ldots}
5 ['A', 'A', 'A', 'G', 'C']
6 ['T', 'A', 'A', 'C', 'C', 'G', 'T', 'T', 'W']
7 ['A', 'A', 'A', 'G', 'Y']
8 ['M', 'C', 'A', 'W', 'A', 'W', 'A', 'T', 'R', {\ldots}
9 ['M', 'T', 'G', 'A', 'C', 'G', 'T']
10 ['G', 'R', 'T', 'G', 'A', 'C', 'G', 'T', 'G', {\ldots}
11 ['T', 'T', 'K', 'Y', 'C', 'C', 'Y', 'T', 'W', {\ldots}
12 ['A', 'G', 'A', 'T', 'Y', 'Y', 'K', 'C']
13 ['C', 'G', 'S', 'Y', 'G', 'C', 'C', 'C', 'C', {\ldots}
14 ['A', 'C', 'T', 'T', 'C', 'T', 'T', 'A', 'T', {\ldots}
15 ['W', 'S', 'A', 'C', 'G', 'T', 'G', 'G']
16 ['T', 'A', 'C', 'G', 'T', 'C', 'A']
17 ['C', 'R', 'C', 'A', 'C', 'G', 'T', 'G', 'K', {\ldots}
18 ['A', 'A', 'T', 'G', 'M', 'C', 'A', 'C', 'G', {\ldots}
19 ['R', 'K', 'A', 'R', 'N', 'G', 'W', 'C', 'A', {\ldots}
20 ['C', 'C', 'T', 'C', 'G', 'T', 'A', 'C']
21 ['W', 'T', 'T', 'T', 'T', 'C', 'C', 'W', 'T', {\ldots}
22 ['A', 'W', 'W', 'W', 'C', 'C', 'A', 'A', 'A', {\ldots}
23 ['W', 'T', 'C', 'C', 'A', 'A', 'A', 'A', 'R', {\ldots}
24 ['C', 'W', 'C', 'A', 'C', 'G', 'C', 'G', 'C', {\ldots}
25 ['A', 'A', 'W', 'T', 'T', 'C', 'C', 'A', 'A', {\ldots}
26 ['C', 'C', 'A', 'A', 'A', 'A', 'R', 'A', 'R', {\ldots}
27 ['A', 'G', 'C', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
28 ['C', 'A', 'C', 'G', 'T', 'G', 'G', 'C']
29 ['T', 'C', 'A', 'C', 'R', 'T', 'G', 'S']
.. {\ldots}
459 ['Y', 'A', 'G', 'A', 'T', 'C', 'T', 'A', 'G', {\ldots}
460 ['W', 'W', 'T', 'G', 'G', 'A', 'T', 'A', 'A', {\ldots}
461 ['W', 'W', 'W', 'A', 'Y', 'C', 'T', 'T', 'A', {\ldots}
462 ['A', 'W', 'W', 'R', 'W', 'R', 'G', 'A', 'T', {\ldots}
463 ['W', 'W', 'A', 'T', 'G', 'G', 'A', 'T', 'A', {\ldots}
464 ['A', 'A', 'A', 'A', 'A', 'T', 'A', 'T', 'C', {\ldots}
465 ['C', 'T', 'C', 'T', 'C', 'T', 'C', 'T', 'C', {\ldots}
466 ['A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', {\ldots}
467 ['G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', {\ldots}
468 ['T', 'C', 'A', 'A', 'T', 'G', 'A', 'T', 'T', {\ldots}
469 ['G', 'Y', 'G', 'R', 'Y', 'G', 'G', 'C', 'G', {\ldots}
470 ['T', 'C', 'C', 'G', 'T', 'A', 'C', 'A', 'A', {\ldots}
471 ['A', 'A', 'W', 'W', 'R', 'T', 'A', 'A', 'T', {\ldots}
472 ['C', 'T', 'T', 'T', 'C', 'C', 'W', 'T', 'T', {\ldots}
473 ['C', 'C', 'R', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots}
474 ['A', 'A', 'T', 'T', 'G', 'T', 'A', 'C', 'G', {\ldots}
475 ['G', 'A', 'C', 'T', 'G', 'A', 'C', 'A', 'G', {\ldots}
476 ['Y', 'A', 'A', 'T', 'S', 'A', 'T', 'T', 'G', {\ldots}
477 ['A', 'A', 'T', 'G', 'A', 'C', 'G', 'T', 'A', {\ldots}
478 ['A', 'G', 'T', 'T', 'A', 'G', 'G', 'T', 'A', {\ldots}
479 ['A', 'A', 'G', 'A', 'T', 'A', 'C', 'G', 'S', {\ldots}
480 ['G', 'G', 'G', 'G', 'S', 'C', 'C', 'M', 'C', {\ldots}
481 ['A', 'G', 'C', 'A', 'C', 'G', 'T', 'G', 'C', {\ldots}
482 ['T', 'G', 'C', 'A', 'C', 'G', 'T', 'G', 'C', {\ldots}
483 ['A', 'A', 'A', 'G', 'A', 'T', 'T', 'C', 'C', {\ldots}
484 ['T', 'G', 'G', 'C', 'G', 'C', 'C', 'A', 'A', {\ldots}
485 ['R', 'A', 'A', 'A', 'C', 'A', 'G', 'A', 'G', {\ldots}
486 ['A', 'A', 'A', 'G', 'T', 'C', 'A', 'A', 'A', {\ldots}
487 ['G', 'A', 'G', 'A', 'G', 'A', 'G', 'A', 'G', {\ldots}
488 ['G', 'T', 'G', 'C', 'C', 'A', 'C', 'G', 'T', {\ldots}
ReverseComplement Genome
0 ['T', 'G', 'C', 'T', 'T', 'T'] 5
1 ['C', 'R', 'C', 'T', 'T', 'T'] 1
2 ['G', 'K', 'C', 'G', 'G', 'T', 'T', 'R', 'T', {\ldots} 91
3 ['R', 'A', 'R', 'T', 'A', 'C', 'R', 'A', 'S'] 21726
4 ['R', 'T', 'K', 'T', 'T', 'K', 'C', 'C', 'A', {\ldots} 25575
5 ['G', 'C', 'T', 'T', 'T'] 79
6 ['W', 'A', 'A', 'C', 'G', 'G', 'T', 'T', 'A'] 7181
7 ['R', 'C', 'T', 'T', 'T'] 2
8 ['A', 'T', 'T', 'W', 'C', 'Y', 'A', 'T', 'W', {\ldots} 27431
9 ['A', 'C', 'G', 'T', 'C', 'A', 'K'] 957
10 ['G', 'K', 'K', 'C', 'A', 'C', 'G', 'T', 'C', {\ldots} 29717
11 ['C', 'G', 'A', 'W', 'A', 'R', 'G', 'G', 'R', {\ldots} 178
12 ['G', 'K', 'R', 'R', 'A', 'T', 'C', 'T'] 4041
13 ['G', 'G', 'G', 'G', 'G', 'C', 'R', 'S', 'C', {\ldots} 20
14 ['K', 'A', 'T', 'A', 'A', 'G', 'A', 'A', 'G', {\ldots} 13
15 ['C', 'C', 'A', 'C', 'G', 'T', 'S', 'W'] 103
16 ['T', 'G', 'A', 'C', 'G', 'T', 'A'] 8031
17 ['Y', 'S', 'K', 'C', 'A', 'C', 'G', 'T', 'G', {\ldots} 22
18 ['A', 'A', 'T', 'G', 'K', 'C', 'A', 'C', 'G', {\ldots} 551
19 ['C', 'C', 'A', 'C', 'G', 'T', 'G', 'W', 'C', {\ldots} 3780
20 ['G', 'T', 'A', 'C', 'G', 'A', 'G', 'G'] 2411
21 ['C', 'C', 'A', 'A', 'A', 'A', 'A', 'W', 'G', {\ldots} 1
22 ['W', 'T', 'Y', 'T', 'T', 'T', 'C', 'C', 'W', {\ldots} 170
23 ['T', 'T', 'T', 'C', 'Y', 'W', 'Y', 'T', 'T', {\ldots} 1
24 ['T', 'N', 'A', 'G', 'C', 'G', 'C', 'G', 'T', {\ldots} 9
25 ['W', 'W', 'C', 'T', 'T', 'T', 'C', 'Y', 'A', {\ldots} 165
26 ['Y', 'T', 'T', 'T', 'C', 'Y', 'T', 'Y', 'T', {\ldots} 375
27 ['T', 'C', 'A', 'C', 'G', 'T', 'G', 'G', 'C', {\ldots} 8
28 ['G', 'C', 'C', 'A', 'C', 'G', 'T', 'G'] 2
29 ['S', 'C', 'A', 'Y', 'G', 'T', 'G', 'A'] 42
.. {\ldots} {\ldots}