From 4866fa67c91c0bb1e1a578f77e6d0ab5456b68af Mon Sep 17 00:00:00 2001
From: jrobinso <933148+jrobinso@users.noreply.github.com>
Date: Fri, 22 Dec 2023 16:15:18 -0800
Subject: [PATCH] update examples

---
 README.md | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/README.md b/README.md
index ccce4aa..e076710 100644
--- a/README.md
+++ b/README.md
@@ -111,7 +111,7 @@ here [https://github.com/igvteam/igv-reports/archive/refs/heads/master.zip](http
 It is assumed that the examples are run from the root directory of the repository. Output html is written to the
 examples directory.
 
-#### Create a variant report from a VCF file: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_vcf.html))
+#### Create a variant report from a VCF file: ([Example output](https://igvteam.github.io/igv-reports/examples/example_vcf.html))
 
 ```bash
 
@@ -127,7 +127,7 @@ create_report test/data/variants/variants.vcf.gz \
 
 ```
 
-#### Create a variant report from a BED  file: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_bed.html))
+#### Create a variant report from a BED  file: ([Example output](https://igvteam.github.io/igv-reports/examples/example_bed.html))
 
 ```bash
 echo bed
@@ -139,7 +139,7 @@ create_report test/data/variants/variants.bed \
 --output example_genome.html
 ```
 
-#### Create a variant report from a TCGA MAF file: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_maf.html))
+#### Create a variant report from a TCGA MAF file: ([Example output](https://igvteam.github.io/igv-reports/examples/example_maf.html))
 
 ```bash
 
@@ -152,7 +152,7 @@ create_report test/data/variants/tcga_test.maf \
 
 ```
 
-#### Create a variant report from a generic tab-delimited file: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_tab.html))
+#### Create a variant report from a generic tab-delimited file: ([Example output](https://igvteam.github.io/igv-reports/examples/example_tab.html))
 
 ```bash
 
@@ -178,7 +178,7 @@ create_report test/data/variants/SKBR3_Sniffles_sv.vcf \
 
 ```
 
-#### Create a structural variant report from a bedpe file with two locations (BEDPE format): ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_bedpe.html))
+#### Create a structural variant report from a bedpe file with two locations (BEDPE format): ([Example output](https://igvteam.github.io/igv-reports/examples/example_bedpe.html))
 
 ```bash
 
@@ -189,7 +189,7 @@ create_report test/data/variants/SKBR3_Sniffles_tra.bedpe \
 --output example_bedpe.html
 ```
 
-#### Create a report using a genome identifier: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_genome.html)\)
+#### Create a report using a genome identifier: ([Example output](https://igvteam.github.io/igv-reports/examples/example_genome.html)\)
 
 ```bash
 create_report test/data/variants/variants.vcf.gz \
@@ -200,7 +200,7 @@ create_report test/data/variants/variants.vcf.gz \
 --output example_genome.html
 ```
 
-#### Create a variant report with tracks defined in an [igv.js track config json file](https://github.com/igvteam/igv-reports/tree/master/test/data/variants/trackConfigs.json): ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_config.html))
+#### Create a variant report with tracks defined in an [igv.js track config json file](https://github.com/igvteam/igv-reports/tree/master/test/data/variants/trackConfigs.json): ([Example output](https://igvteam.github.io/igv-reports/examples/example_config.html))
 
 ``` bash
 create_report test/data/variants/variants.vcf.gz \
@@ -212,7 +212,7 @@ create_report test/data/variants/variants.vcf.gz \
 --output example_config.html
 ```
 
-#### Create a variant report with custom ID link urls: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_idlink.html))
+#### Create a variant report with custom ID link urls: ([Example output](https://igvteam.github.io/igv-reports/examples/example_idlink.html))
 
 ```bash
 
@@ -225,7 +225,7 @@ create_report test/data/variants/1kg_phase3_sites.vcf.gz \
 
 ```
 
-#### Create a junction report from a splice-junction bed file: ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_junctions.html))
+#### Create a junction report from a splice-junction bed file: ([Example output](https://igvteam.github.io/igv-reports/examples/example_junctions.html))
 
 ```bash
 create_report test/data/junctions/Introns.38.bed \
@@ -258,7 +258,7 @@ create_report test/data/wig/regions.bed \
 
 ```
 
-#### Use of ```info-columns-prefixes``` option. Variant track only, no alignments. ([Example output](https://igv.org/igv-reports/examples/1.9.0/example_ann.html))
+#### Use of ```info-columns-prefixes``` option. Variant track only, no alignments. ([Example output](https://igvteam.github.io/igv-reports/examples/example_ann.html))
 
 ```bash
 python igv_reports/report.py test/data/annotated_vcf/consensus.filtered.ann.vcf \